These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [AGCATCAGCAGCAACAGCAGCAGCACCACCTGCTACTGTCATCAGCCCATCATCAGCTCCAGTCGTCCACGAACAGTATTGTCGGTGCGGCGGGGAGTGGTGGTAGTAGCGGCGGCGGCGGCGGTAACCTAACGCCACCTCCACCGCCTCCGAACAGTAAGGCACCGTCCCGGCCCGTCTAGAGAGGGACTGGACCCCTGGACTAGAGTTGAACTTCAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGCCGGTGCCGGTGAAACTAGATTAATCGGGTTGCGCCGATCGGAGGATGGAACCTGGAGGGAGGGATGATTTCACGACGACTGTGAGAGCAGGTCGTGGTGCGGGAGCTGTAAA] [+] EMBL BX617276 [AGCATCAGCAGCAACAGCAGCAGCACCACCTGCTACTGTCATCAGCCCATCATCAGCTCCAGTCGTCCACGAACAGTATTGTCGGTGCGGCGGGGAGTGGTGGTAGTAGCGGCGGCGGCGGCGGTAACCTAACGCCACCTCCACCGCCTCCGAACAGTAAGGCACCGTCCCGGCCCGTCTAGAGAGGGACTGGACCCCTGGACTAGAGTTGAACTTCAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGCCGGTGCCGGTGAAACTAGATTAATCGGGTTGCGCCGATCGGAGGATGGAACCTGGAGGGAGGGATGATTTCACGACGACTGTGAGAGCAGGTCGTGGTGCGGGAGCTGTAAA] consensusID : consensus_4677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [GCTCAAGGCAGATCGGCACAGGGAATGTGAACGTCCCGGCCCGTCTAGACGAGGGACTGGACCCCTGGACTAGAGTTGAACTTCAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGTGCCGGTGCCGGTGAAACTAGATTAATCGGGTTGCGCGGATCGGAGGATGGAACCTGGAGGGAGGGATGATATTCACGACGACTGTGAGAGCAGGTCGGGATGCGGGAGCTGTAAAGTAGAGGGCAGGCGCCAGGTACAGGAACGGCAGGAGCTAGCGAGCTAGGCGATCTAAAGTACCAAAAGAGTCACGTTAAAAGAATTAAATCTTAAGCTGATAGAAGAAGACTATAGTGGAGAA] [+] EMBL BX466303 [GCTCAAGGCAGATCGGCACAGGGAATGTGAACGTCCCGGCCCGTCTAGACGAGGGACTGGACCCCTGGACTAGAGTTGAACTTCAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGTGCCGGTGCCGGTGAAACTAGATTAATCGGGTTGCGCGGATCGGAGGATGGAACCTGGAGGGAGGGATGATATTCACGACGACTGTGAGAGCAGGTCGGGATGCGGGAGCTGTAAAGTAGAGGGCAGGCGCCAGGTACAGGAACGGCAGGAGCTAGCGAGCTAGGCGATCTAAAGTACCAAAAGAGTCACGTTAAAAGAATTAAATCTTAAGCTGATAGAAGAAGACTATAGTGGAGAA] consensusID : consensus_4677#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [AGGCAGATCGCGCACGAGNTGTAGCGGGGAGTGGTGGTAGCACTGGCGGCGGCGGCGGTAACATAACTTCCCGGCGGCGGTCCTAATCCGAACGAATCGGGCGGCTCATCCTCGACCACCCTCTCGTTCGTCTGCGTCGTCCCGCATGAGAGCGCCACCTCCACCGCCTCCGAACAGAAAGGCACCGTCCCGGCCCGTCTAGAGAGGGACTGGACCCCTGGAGCTAGAGTTGAACTTCAACGTTAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGTGCCGGTGCCGGGTAAACTTAGATTAATCGGGTTGCGCGGATCGGAGGGATGGAACCTGGGAGGGGGAG] [+] EMBL BX468076 [AGGCAGATCGCGCACGAGNTGTAGCGGGGAGTGGTGGTAGCACTGGCGGCGGCGGCGGTAACATAACTTCCCGGCGGCGGTCCTAATCCGAACGAATCGGGCGGCTCATCCTCGACCACCCTCTCGTTCGTCTGCGTCGTCCCGCATGAGAGCGCCACCTCCACCGCCTCCGAACAGAAAGGCACCGTCCCGGCCCGTCTAGAGAGGGACTGGACCCCTGGAGCTAGAGTTGAACTTCAACGTTAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGTGTGCCGGTGCCGGGTAAACTTAGATTAATCGGGTTGCGCGGATCGGAGGGATGGAACCTGGGAGGGGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4677#0 -----------------AGCATCAGCAGCAACAGCAGCAGCACCACCTGCTACTGTCATC 43 consensus_4677#1 ------------------------------------------------------------ consensus_4677#2 AGGCAGATCGCGCACGAGNTGTAGCGGGGAGTGGTGGTAGCACTGGCGGCGGCGGCGGTA 60 consensus_4677#0 AGCCCA-TCATCAGCTCCAGTCGTC-CACGAACAGTATTGTCGGTGCGGCGGGGAGTGGT 101 consensus_4677#1 ------------------------------------------------------------ consensus_4677#2 ACATAACTTCCCGGCGGCGGTCCTAATCCGAACGAATCGGGCGGCTCATCCTCGACCACC 120 consensus_4677#0 GGTAGTAGCGGCGGCGGCGGCG-GTAACCTAACGCCACCTCCACCGCCTCCGAACAGTAA 160 consensus_4677#1 ------------------------------------GCTCAAGGCAGATCGGCACAGGGA 24 consensus_4677#2 CTCTCGTTCGTCTGCGTCGTCCCGCATGAGAGCGCCACCTCCACCGCCTCCGAACAGAAA 180 * * ** * **** * consensus_4677#0 --GGCACCGTCCCGGCCCGTCTAGA-GAGGGACTGGACCCCTGGA-CTAGAGTTGAACTT 216 consensus_4677#1 ATGTGAACGTCCCGGCCCGTCTAGACGAGGGACTGGACCCCTGGA-CTAGAGTTGAACTT 83 consensus_4677#2 --GGCACCGTCCCGGCCCGTCTAGA-GAGGGACTGGACCCCTGGAGCTAGAGTTGAACTT 237 * * ****************** ******************* ************** consensus_4677#0 CAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGT 276 consensus_4677#1 CAACGTTAAAACCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGT 143 consensus_4677#2 CAACGTTAAA-CCGCTAAACAGAAAAAGTCAGTGATCGTTGCCAATTAGTGTGTGTGTGT 296 ********** ************************************************* consensus_4677#0 G--CCGGTGCCGGTGAAACT-AGATTAATCGGGTTGCGCCGATCGGAGG-ATGGAACCTG 332 consensus_4677#1 GTGCCGGTGCCGGTGAAACT-AGATTAATCGGGTTGCGCGGATCGGAGG-ATGGAACCTG 201 consensus_4677#2 GTGCCGGTGCCGGGTAAACTTAGATTAATCGGGTTGCGCGGATCGGAGGGATGGAACCTG 356 * ********** ***** ****************** ********* ********** consensus_4677#0 GAGGGAGGGATGAT-TTCACGACGACTGTGAGAGCAGGTCGTGGTGCGGGAGCTGTAAA- 390 consensus_4677#1 GAGGGAGGGATGATATTCACGACGACTGTGAGAGCAGGTCGGGATGCGGGAGCTGTAAAG 261 consensus_4677#2 GGAGGGGGAG-------------------------------------------------- 366 * ** ** consensus_4677#0 ------------------------------------------------------------ consensus_4677#1 TAGAGGGCAGGCGCCAGGTACAGGAACGGCAGGAGCTAGCGAGCTAGGCGATCTAAAGTA 321 consensus_4677#2 ------------------------------------------------------------ consensus_4677#0 ------------------------------------------------------------ consensus_4677#1 CCAAAAGAGTCACGTTAAAAGAATTAAATCTTAAGCTGATAGAAGAAGACTATAGTGGAG 381 consensus_4677#2 ------------------------------------------------------------ consensus_4677#0 -- consensus_4677#1 AA 383 consensus_4677#2 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||