These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4679#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [AGGCAGAATCGGCACGNAGGGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATAAAGAAAAAACCAGTAAAATCACAACAGAAACGATGGCTTTTCTATTCAAGACCGTTGCCTGCCTGGCGCTGCTGTCAGTCGCTGCCTGCGAGTATGGCGGCGAGGAGGAGCATCACGGACACCACCACAGCGTCGGCTACTCGGTACGGCCAAGGTTCAGCGGACCGGGTCAGTGGGCCGGCGCACGAGATCCACGGTCGAGGACAAGCACGGGCACGGACACCAGATTGACTACGTTGCGAAGCCGGACTACGTGTTCGAGTACGGCGTGGAGGACCCGAAGAGCAAGGTCTCGCAGAGCCGCAAGGAGCACCGGCACGAGGACGAGCTGCGACGGCGAGTACAGCCTGCACCAGCCGGACGGCGAACTGTCGCACGGTCAAGTACAGCTCGAACAAGCACAGCGGATTCCAGGCGTGAAGTGTTGATCGATGGAAAGGCCACTGCGCACCGAGGA] [+] EMBL BX469793 [AGGCAGAATCGGCACGNAGGGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATAAAGAAAAAACCAGTAAAATCACAACAGAAACGATGGCTTTTCTATTCAAGACCGTTGCCTGCCTGGCGCTGCTGTCAGTCGCTGCCTGCGAGTATGGCGGCGAGGAGGAGCATCACGGACACCACCACAGCGTCGGCTACTCGGTACGGCCAAGGTTCAGCGGACCGGGTCAGTGGGCCGGCGCACGAGATCCACGGTCGAGGACAAGCACGGGCACGGACACCAGATTGACTACGTTGCGAAGCCGGACTACGTGTTCGAGTACGGCGTGGAGGACCCGAAGAGCAAGGTCTCGCAGAGCCGCAAGGAGCACCGGCACGAGGACGAGCTGCGACGGCGAGTACAGCCTGCACCAGCCGGACGGCGAACTGTCGCACGGTCAAGTACAGCTCGAACAAGCACAGCGGATTCCAGGCGTGAAGTGTTGATCGATGGAAAGGCCACTGCGCACCGAGGA] consensusID : consensus_4679#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 301 fasta sequence [AAGTAAGAAGCAATAGTCAGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATAAAAGAAAAAANCCCAGTAAAATCACAACAGAAACGATGGCTATTCTATTCAAGACCGTTGCCTGCCTGGCGACTGCTGTCAGTCGATGCCTGCGAGTATGGCGGCGAGGAGGAGCATCACGGTACACCACCACAGCGTCNGCTACTCNTACGCCAAGTTCANCGGACCGGTCAGNGGGCCGGCGCACGAGATCCACGTCNAGGACAAGCACGGGCACGGACACCAGATTGACTACGTTGCGAA] [+] EMBL BX619412 [AAGTAAGAAGCAATAGTCAGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATAAAAGAAAAAANCCCAGTAAAATCACAACAGAAACGATGGCTATTCTATTCAAGACCGTTGCCTGCCTGGCGACTGCTGTCAGTCGA ] [+] EMBL BX622047 [ GAANCAATAGTCAGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGAT AAAGAAAAAA CCAGTAAAATCACAACAGAAACGATGGCTTTTCTATTCAAGACCGTTGCCTGCCTGGCG CTGCTGTCNNTCGCTGCCTGCGAGTATGGCGGCGAGGAGGAGCATCACGGTACACCACCACAGCGTCNGCTACTCNTACGCCAAGTTCANCGGACCGGTCAGNGGGCCGGCGCACGAGATCCACGTCNAGGACAAGCACGGGCACGGACACCAGATTGACTACGTTGCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4679#0 -AGGCAGAATCGGCACGNAGGGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATA 59 consensus_4679#1 AAGTAAGAAGCAATAGTCA--GCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATA 58 ** **** * * * *************************************** consensus_4679#0 AAGAAAAAA---CCAGTAAAATCACAACAGAAACGATGGCTTTTCTATTCAAGACCGTTG 116 consensus_4679#1 AAAGAAAAAANCCCAGTAAAATCACAACAGAAACGATGGCTATTCTATTCAAGACCGTTG 118 ** ***** ***************************** ****************** consensus_4679#0 CCTGCCTGGCG-CTGCTGTCAGTCGCTGCCTGCGAGTATGGCGGCGAGGAGGAGCATCAC 175 consensus_4679#1 CCTGCCTGGCGACTGCTGTCAGTCGATGCCTGCGAGTATGGCGGCGAGGAGGAGCATCAC 178 *********** ************* ********************************** consensus_4679#0 GG-ACACCACCACAGCGTCGGCTACTCGGTACGGCCAAGGTTCAGCGGACCGGGTCAGTG 234 consensus_4679#1 GGTACACCACCACAGCGTCNGCTACTCN-TACGCC--AAGTTCANCGGACCGG-TCAGNG 234 ** **************** ******* **** * * ***** ******** **** * consensus_4679#0 GGCCGGCGCACGAGATCCACGGTCGAGGACAAGCACGGGCACGGACACCAGATTGACTAC 294 consensus_4679#1 GGCCGGCGCACGAGATCCACG-TCNAGGACAAGCACGGGCACGGACACCAGATTGACTAC 293 ********************* ** *********************************** consensus_4679#0 GTTGCGAAGCCGGACTACGTGTTCGAGTACGGCGTGGAGGACCCGAAGAGCAAGGTCTCG 354 consensus_4679#1 GTTGCGAA---------------------------------------------------- 301 ******** consensus_4679#0 CAGAGCCGCAAGGAGCACCGGCACGAGGACGAGCTGCGACGGCGAGTACAGCCTGCACCA 414 consensus_4679#1 ------------------------------------------------------------ consensus_4679#0 GCCGGACGGCGAACTGTCGCACGGTCAAGTACAGCTCGAACAAGCACAGCGGATTCCAGG 474 consensus_4679#1 ------------------------------------------------------------ consensus_4679#0 CGTGAAGTGTTGATCGATGGAAAGGCCACTGCGCACCGAGGA 516 consensus_4679#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||