cluster # 4679

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Anopheles gambiae
cluster # 4679 cluster # 4679 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4679#0 length = 516 sequences # 1

consensus_4679#1 length = 301 sequences # 2

consensusID : consensus_4679#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [AGGCAGAATCGGCACGNAGGGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATAAAGAAAAAACCAGTAAAATCACAACAGAAACGATGGCTTTTCTATTCAAGACCGTTGCCTGCCTGGCGCTGCTGTCAGTCGCTGCCTGCGAGTATGGCGGCGAGGAGGAGCATCACGGACACCACCACAGCGTCGGCTACTCGGTACGGCCAAGGTTCAGCGGACCGGGTCAGTGGGCCGGCGCACGAGATCCACGGTCGAGGACAAGCACGGGCACGGACACCAGATTGACTACGTTGCGAAGCCGGACTACGTGTTCGAGTACGGCGTGGAGGACCCGAAGAGCAAGGTCTCGCAGAGCCGCAAGGAGCACCGGCACGAGGACGAGCTGCGACGGCGAGTACAGCCTGCACCAGCCGGACGGCGAACTGTCGCACGGTCAAGTACAGCTCGAACAAGCACAGCGGATTCCAGGCGTGAAGTGTTGATCGATGGAAAGGCCACTGCGCACCGAGGA]

[+] EMBL BX469793             [AGGCAGAATCGGCACGNAGGGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATAAAGAAAAAACCAGTAAAATCACAACAGAAACGATGGCTTTTCTATTCAAGACCGTTGCCTGCCTGGCGCTGCTGTCAGTCGCTGCCTGCGAGTATGGCGGCGAGGAGGAGCATCACGGACACCACCACAGCGTCGGCTACTCGGTACGGCCAAGGTTCAGCGGACCGGGTCAGTGGGCCGGCGCACGAGATCCACGGTCGAGGACAAGCACGGGCACGGACACCAGATTGACTACGTTGCGAAGCCGGACTACGTGTTCGAGTACGGCGTGGAGGACCCGAAGAGCAAGGTCTCGCAGAGCCGCAAGGAGCACCGGCACGAGGACGAGCTGCGACGGCGAGTACAGCCTGCACCAGCCGGACGGCGAACTGTCGCACGGTCAAGTACAGCTCGAACAAGCACAGCGGATTCCAGGCGTGAAGTGTTGATCGATGGAAAGGCCACTGCGCACCGAGGA]




>consensus_4679#0
AGGCAGAATCGGCACGNAGGGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATAA
AGAAAAAACCAGTAAAATCACAACAGAAACGATGGCTTTTCTATTCAAGACCGTTGCCTG
CCTGGCGCTGCTGTCAGTCGCTGCCTGCGAGTATGGCGGCGAGGAGGAGCATCACGGACA
CCACCACAGCGTCGGCTACTCGGTACGGCCAAGGTTCAGCGGACCGGGTCAGTGGGCCGG
CGCACGAGATCCACGGTCGAGGACAAGCACGGGCACGGACACCAGATTGACTACGTTGCG
AAGCCGGACTACGTGTTCGAGTACGGCGTGGAGGACCCGAAGAGCAAGGTCTCGCAGAGC
CGCAAGGAGCACCGGCACGAGGACGAGCTGCGACGGCGAGTACAGCCTGCACCAGCCGGA
CGGCGAACTGTCGCACGGTCAAGTACAGCTCGAACAAGCACAGCGGATTCCAGGCGTGAA
GTGTTGATCGATGGAAAGGCCACTGCGCACCGAGGA

consensusID : consensus_4679#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 301
fasta sequence

                              [AAGTAAGAAGCAATAGTCAGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATAAAAGAAAAAANCCCAGTAAAATCACAACAGAAACGATGGCTATTCTATTCAAGACCGTTGCCTGCCTGGCGACTGCTGTCAGTCGATGCCTGCGAGTATGGCGGCGAGGAGGAGCATCACGGTACACCACCACAGCGTCNGCTACTCNTACGCCAAGTTCANCGGACCGGTCAGNGGGCCGGCGCACGAGATCCACGTCNAGGACAAGCACGGGCACGGACACCAGATTGACTACGTTGCGAA]

[+] EMBL BX619412             [AAGTAAGAAGCAATAGTCAGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATAAAAGAAAAAANCCCAGTAAAATCACAACAGAAACGATGGCTATTCTATTCAAGACCGTTGCCTGCCTGGCGACTGCTGTCAGTCGA                                                                                                                                                             ]
[+] EMBL BX622047             [      GAANCAATAGTCAGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGAT AAAGAAAAAA  CCAGTAAAATCACAACAGAAACGATGGCTTTTCTATTCAAGACCGTTGCCTGCCTGGCG CTGCTGTCNNTCGCTGCCTGCGAGTATGGCGGCGAGGAGGAGCATCACGGTACACCACCACAGCGTCNGCTACTCNTACGCCAAGTTCANCGGACCGGTCAGNGGGCCGGCGCACGAGATCCACGTCNAGGACAAGCACGGGCACGGACACCAGATTGACTACGTTGCGAA]




>consensus_4679#1
AAGTAAGAAGCAATAGTCAGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATAAA
AGAAAAAANCCCAGTAAAATCACAACAGAAACGATGGCTATTCTATTCAAGACCGTTGCC
TGCCTGGCGACTGCTGTCAGTCGATGCCTGCGAGTATGGCGGCGAGGAGGAGCATCACGG
TACACCACCACAGCGTCNGCTACTCNTACGCCAAGTTCANCGGACCGGTCAGNGGGCCGG
CGCACGAGATCCACGTCNAGGACAAGCACGGGCACGGACACCAGATTGACTACGTTGCGA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4679#0      -AGGCAGAATCGGCACGNAGGGCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATA 59
consensus_4679#1      AAGTAAGAAGCAATAGTCA--GCTAGATCGACCGCAGTTCGTGCACAGGAAAGTGGGATA 58
                       **  **** *   *   *  ***************************************

consensus_4679#0      AAGAAAAAA---CCAGTAAAATCACAACAGAAACGATGGCTTTTCTATTCAAGACCGTTG 116
consensus_4679#1      AAAGAAAAAANCCCAGTAAAATCACAACAGAAACGATGGCTATTCTATTCAAGACCGTTG 118
                      **  *****   ***************************** ******************

consensus_4679#0      CCTGCCTGGCG-CTGCTGTCAGTCGCTGCCTGCGAGTATGGCGGCGAGGAGGAGCATCAC 175
consensus_4679#1      CCTGCCTGGCGACTGCTGTCAGTCGATGCCTGCGAGTATGGCGGCGAGGAGGAGCATCAC 178
                      *********** ************* **********************************

consensus_4679#0      GG-ACACCACCACAGCGTCGGCTACTCGGTACGGCCAAGGTTCAGCGGACCGGGTCAGTG 234
consensus_4679#1      GGTACACCACCACAGCGTCNGCTACTCN-TACGCC--AAGTTCANCGGACCGG-TCAGNG 234
                      ** **************** *******  **** *  * ***** ******** **** *

consensus_4679#0      GGCCGGCGCACGAGATCCACGGTCGAGGACAAGCACGGGCACGGACACCAGATTGACTAC 294
consensus_4679#1      GGCCGGCGCACGAGATCCACG-TCNAGGACAAGCACGGGCACGGACACCAGATTGACTAC 293
                      ********************* ** ***********************************

consensus_4679#0      GTTGCGAAGCCGGACTACGTGTTCGAGTACGGCGTGGAGGACCCGAAGAGCAAGGTCTCG 354
consensus_4679#1      GTTGCGAA---------------------------------------------------- 301
                      ********                                                    

consensus_4679#0      CAGAGCCGCAAGGAGCACCGGCACGAGGACGAGCTGCGACGGCGAGTACAGCCTGCACCA 414
consensus_4679#1      ------------------------------------------------------------
                                                                                  

consensus_4679#0      GCCGGACGGCGAACTGTCGCACGGTCAAGTACAGCTCGAACAAGCACAGCGGATTCCAGG 474
consensus_4679#1      ------------------------------------------------------------
                                                                                  

consensus_4679#0      CGTGAAGTGTTGATCGATGGAAAGGCCACTGCGCACCGAGGA 516
consensus_4679#1      ------------------------------------------