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Anopheles gambiae
cluster # 4688 cluster # 4688       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4688#0 length = 728 sequences # 2  
consensus_4688#1 length = 545 sequences # 1  

consensusID : consensus_4688#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 728
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGCAGCGACAGAGAGGGCACGTGGGAGAGCAGCAGCAGGAAGGGGGGCGACCATTGCGACAAAAGTGAAACACATTATTCTTTAAGAGTAGTCGGTACACCGATCGGCGCAGTGGTGCGAGAGACGAACGGTGGGAAACATACGGT-GGGAGACGAATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACAACGGGTAAAAAGCGCGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCGATTTGAGGATCAATCGGGTTCGAGCGACAAAACCAC-AACAAAAATGCAAACAATCGAATGTATGCGTGTTAAGGCTTTGGTTAGATGTTAGGTTAGGTACTTCCGGTTCTCATCACCTTACAAAAAGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATATTTCCCTATGTTTTTGTTTAGCGTGTAAGTTTGTTTAGTGTCCTACTATTATTACCAGTCGTTTAATTTGTCGTTAATAGAATTAGCGCGAAAACCTCTCCCCACTCTTATATATATATAAAAAACCCAAACACACAGTACACGCGAGATAGCTACGACACACACACGGAAATCAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAAGAGACTATTTAATCGAAGAAAATAAGAAACAGAGA]

[+] EMBL BM588557             [CCGCGGACGCGTGGGCGGACGCGTGGGCAGCGACAGAGAGGGCACGTGGGAGAGCAGCAGCAGGAAGGGGGGCGACCATTGCGACAAAAGTGAAACACATTATTCTTTAAGAGTAGTCGGTACACCGATCGGCGCAGTGGTGCGAGAGACGAACGGTGGGAAACATACGGT GGGAGACGAATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACAACGGGTAAAAAGCGCGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCGATTTGAGGATCAATCGGGTTCGAGCGACAAAACCAC AACAAAAATGCAAACAATCGAATGTATGCGTGTTAAGGCTTTGGTTAGATGTTAGGTTAGGTACTTCCGGTTCTCATCACCTTACAAAAAGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATATTTCCCTATGTTTTTGTTTAGCGTG                                                                                                                                                                                                                                     ]
[+] EMBL BX609123             [                                                                                                           TAAGAGTAGTCGGTACACCCATTGGCGCAGTGGCGCGAGAGACGAACGGTGTGAAACATACGGTAGGGAGACGAATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACGACGGGTAAAAAGCGCGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCGATTTGAGGATCAATCGGGTTCGAGCGACAAAACCACAAAAAAAAATGCAAACAATCGAATGTGTGCGTGTTAACCGAAGGGTTAGATGTTAGGTTAAGTACTTCTGGTTCTCATCACCTTACAAAAAGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATATTTCCCTATGTTTTTGTTTAGCGCGTAAGTTTGTTTAGTGTCCTACTATTATTACCAGTCGTTTAATTTGTCGTTAATAGAATTAGCGCGAAAACCTCTCCCCACTCTTATATATATATAAAAAACCCAAACACACAGTACACGCGAGATAGCTACGACACACACACGGAAATCAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAAGAGACTATTTAATCGAAGAAAATAAGAAACAGAGA]


>consensus_4688#0 CCGCGGACGCGTGGGCGGACGCGTGGGCAGCGACAGAGAGGGCACGTGGGAGAGCAGCAG CAGGAAGGGGGGCGACCATTGCGACAAAAGTGAAACACATTATTCTTTAAGAGTAGTCGG TACACCGATCGGCGCAGTGGTGCGAGAGACGAACGGTGGGAAACATACGGTGGGAGACGA ATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACAACGGGTAAAAAGCG CGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCGATTTG AGGATCAATCGGGTTCGAGCGACAAAACCACAACAAAAATGCAAACAATCGAATGTATGC GTGTTAAGGCTTTGGTTAGATGTTAGGTTAGGTACTTCCGGTTCTCATCACCTTACAAAA AGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATATTTCCC TATGTTTTTGTTTAGCGTGTAAGTTTGTTTAGTGTCCTACTATTATTACCAGTCGTTTAA TTTGTCGTTAATAGAATTAGCGCGAAAACCTCTCCCCACTCTTATATATATATAAAAAAC CCAAACACACAGTACACGCGAGATAGCTACGACACACACACGGAAATCAAATACTACTGT TACTACTAATAATGGCATCACACTACTGAGAAAGAGACTATTTAATCGAAGAAAATAAGA AACAGAGA



consensusID : consensus_4688#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence
                              [CCGCACTCTTATATATAAAAAAAATCCCAAACACACACGTGAGATAGCTATGACACACACACACGGAAATTAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAGAGACTATTTAATCGAAGAAAATAAGAAACAGAGAGAGACAGAGAGTGCGAGATACATAATTGCAAATGAGAACAGATTGTCTTTGGATTTTTTTTTTGGTGGGCAGGTGTGTGTGTGTTGGTTCCACTTCGGTTCGGTTCGGATTACATTTAAGCCTTTCTTCGTGTGCAAAAACAAAGCTGCAATTCGCGCTCTGCCATGGCAAAAGAGGCTCCCGCTTGCTCGATGTCCTCGATCAATCGCTGTCTGTCTGGATGGAAACTGTCGTTAGAAGCCGATCGTCTTTGGGAAGAATCCTCCAATCGGGTTCATCGCTGACCCTCACTCTCTGGGTGTGTGTGTCTGTATAAAATACCGAAAAACGCTTAGCAGCGCTATATATTTGTCTCAATGGACGCGAAACATTGTGTTAGAGAAGGTTGAGCGAAT]

[+] EMBL BM591092             [CCGCACTCTTATATATAAAAAAAATCCCAAACACACACGTGAGATAGCTATGACACACACACACGGAAATTAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAGAGACTATTTAATCGAAGAAAATAAGAAACAGAGAGAGACAGAGAGTGCGAGATACATAATTGCAAATGAGAACAGATTGTCTTTGGATTTTTTTTTTGGTGGGCAGGTGTGTGTGTGTTGGTTCCACTTCGGTTCGGTTCGGATTACATTTAAGCCTTTCTTCGTGTGCAAAAACAAAGCTGCAATTCGCGCTCTGCCATGGCAAAAGAGGCTCCCGCTTGCTCGATGTCCTCGATCAATCGCTGTCTGTCTGGATGGAAACTGTCGTTAGAAGCCGATCGTCTTTGGGAAGAATCCTCCAATCGGGTTCATCGCTGACCCTCACTCTCTGGGTGTGTGTGTCTGTATAAAATACCGAAAAACGCTTAGCAGCGCTATATATTTGTCTCAATGGACGCGAAACATTGTGTTAGAGAAGGTTGAGCGAAT]


>consensus_4688#1 CCGCACTCTTATATATAAAAAAAATCCCAAACACACACGTGAGATAGCTATGACACACAC ACACGGAAATTAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAGAGAC TATTTAATCGAAGAAAATAAGAAACAGAGAGAGACAGAGAGTGCGAGATACATAATTGCA AATGAGAACAGATTGTCTTTGGATTTTTTTTTTGGTGGGCAGGTGTGTGTGTGTTGGTTC CACTTCGGTTCGGTTCGGATTACATTTAAGCCTTTCTTCGTGTGCAAAAACAAAGCTGCA ATTCGCGCTCTGCCATGGCAAAAGAGGCTCCCGCTTGCTCGATGTCCTCGATCAATCGCT GTCTGTCTGGATGGAAACTGTCGTTAGAAGCCGATCGTCTTTGGGAAGAATCCTCCAATC GGGTTCATCGCTGACCCTCACTCTCTGGGTGTGTGTGTCTGTATAAAATACCGAAAAACG CTTAGCAGCGCTATATATTTGTCTCAATGGACGCGAAACATTGTGTTAGAGAAGGTTGAG CGAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4688#0      CCGCGGACGCGTGGGCGGACGCGTGGGCAGCGACAGAGAGGGCACGTGGGAGAGCAGCA- 59
consensus_4688#1      CCGCACTCTTATATATAAAAAAAATCCCAAACACACACGTGAGATAGCTATGACACACAC 60
                      ****   *   *      *        **   *** *   *  *       **    ** 

consensus_4688#0      GCAGGAAGGGGGGCGACCATTGCGACAAAAGTGAAACACATTATTCT-TTAAGAGTAGTC 118
consensus_4688#1      ACACGGAAATTAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAGAGAC 120
                       ** * *        ** * **  ** *     **   *** *  **  * ***  ** *

consensus_4688#0      GGTACA-CCGATCGGCGCAGTGGT--GCGAGAGACGAACGGTGGGAAACATACGGTGGGA 175
consensus_4688#1      TATTTAATCGAAGAAAATAAGAAACAGAGAGAGACAGAGAGTGCGAGATACATAATTGCA 180
                        *  *  ***       *       * *******  *  *** ** * * *   * * *

consensus_4688#0      GACGAATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACAACGGGTAAA 235
consensus_4688#1      AATGAGAAC---AGATTGTCTTTGGATTTTTTTTTTGGT--GGGCAGGTGTGTGTGTGTT 235
                       * **  **      *** * ** *   *   ****  *    ***       * **   

consensus_4688#0      AAGCGCGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCG 295
consensus_4688#1      GGTTCCACTTCGGTTCGGTTCGGATTAC---ATTTAAGCCTTTCTTCGTGTGCAAAAACA 292
                           *   **     * *** * * **   ****     **   *  *  * **** * 

consensus_4688#0      ATTTGAGGATCAATCGGGTTCGAGCGACAAAACCACAACAAAAATGCAAACAATCGAATG 355
consensus_4688#1      AAGCTGCAAT---TCGCGCTCTG---------CCATGGCAAAAG---AGGCTCCCGCTTG 337
                      *       **   *** * **           ***   *****    *  *   **  **

consensus_4688#0      TATG-CGTGTTAAGGCTTTGGTTAGATGTTAGGTTAGGTACTTCCGGTTCTCATCACCTT 414
consensus_4688#1      CTCGATGTCCTCGATCAATCGCTGTCTGTCTGGATGGAAACTGTCGTTAGAAGCCGATCG 397
                         *  **  *    *  * * *   ***  ** * *  ***  ** *      *     

consensus_4688#0      ACAAAAAGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATA 474
consensus_4688#1      TCTTTGGGAAGAATCCTCCAA-----TCGGGTTCATCGCTGACCCTCAC-----TCTCTG 447
                       *     *** **       *     *** ***  *   *     * *      *   * 

consensus_4688#0      TTTCCCTATGTTTTTGTTTAGCGTGTAAGTTTGTTTAGTGTC-CTAC-TATTATTACCAG 532
consensus_4688#1      GGTGTGTGTGTCTGTATAAAATACCGAAAAACGCTTAGCAGCGCTATATATTTGTCTCAA 507
                        *   * *** * * *  *      **    * ****   * ***  ****  *  ** 

consensus_4688#0      T---CGTTTAATTTGTCGTTAATAGAATTAGCGCGAAAACCTCTCCCCACTCTTATATAT 589
consensus_4688#1      TGGACGCGAAACATTGTGTTAGAGAAGGTTGAGCGAAT---------------------- 545
                      *   **   **  *   ****    *  * * *****                       

consensus_4688#0      ATATAAAAAACCCAAACACACAGTACACGCGAGATAGCTACGACACACACACGGAAATCA 649
consensus_4688#1      ------------------------------------------------------------
                                                                                  

consensus_4688#0      AATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAAGAGACTATTTAATCGA 709
consensus_4688#1      ------------------------------------------------------------
                                                                                  

consensus_4688#0      AGAAAATAAGAAACAGAGA 728
consensus_4688#1      -------------------
                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)