These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1035 fasta sequence [CCGCACTATCACGTAAAATTACTTATCATATTGGGACACGCATCGTAATGCTATAGAGCTAGACGCAGTACAATCTAGAGGAAAGCATGAAGAACTTCAAAACAAGTATGTGTGTAAACGCTCTCCTGCGCGTTATGTCGTGCATATCCAGATGCTTCTCAGAGACTTCAGAACAAATTAAGTAATTTAAAAACAAAATGCACTGTTTTAGATGAAAGCTAAACGCTAGACGAAATTATAAAAGTGCACCCAAGCTAGTAGAAAAGGTGAAAAACGGAAAGGACGTTATATACACATACAGTTTGTGCAACCGATCGTCACTGTCATGTTGGAGTTAATGTGCTGTTGCGTGTTGTAGAAGAAGAAATAGTAGCAAATAGTAATTAGATAACAACTGTAGCACATAGAAAGGGGAAAGGGAAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGGGGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAGCGTGTTTTTTTTGGAGGTTTCGTGTATGTTTGAGTGTTTGTAGTACAGCAGTATGAACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCAATCACATGGTTCGCATGTTGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCAACAATTAAGATATTTATAGATTGATTGTATTATAGGCAAGCGGCAAGCGGAGTAAACACACAAGCTGCTACAATTATGTGGCGCAAAACGAAGGCAAACAGATACGAGATTTGCCCTAGATTCTCCCGATGGGTGGTGATATAAAGCCGAGTGTACAGCGCATCGTGCATGCGACGCTGTGAGAGTAAAAAAGAAGCATCGATCTATTATAGAACCCACTGTACACCGTAATGCATGCCCTTACTCAAAAGAATAATATACATATTTATTATCATAATATCTAACTGCACACAGGTCACGGGCCAATCTGAGAGACACAAATTAAA] [+] EMBL BM586614 [CCGCACTATCACGTAAAATTACTTATCATATTGGGACACGCATCGTAATGCTATAGAGCTAGACGCAGTACAATCTAGAGGAAAGCATGAAGAACTTCAAAACAAGTATGTGTGTAAACGCTCTCCTGCGCGTTATGTCGTGCATATCCAGATGCTTCTCAGAGACTTCAGAACAAATTAAGTAATTTAAAAACAAAATGCACTGTTTTAGATGAAAGCTAAACGCTAGACGAAATTATAAAAGTGCACCCAAGCTAGTAGAAAAGGTGAAAAACGGAAAGGACGTTATATACACATACAGTTTGTGCAACCGATCGTCACTGTCATGTTGGAGTTAATGTGCTGTTGCGTGTTGTAGAAGAAGAAATAGTAGCAAATAGTAATTAGATAACAACTGTAGCACATAGAAAGGGGAAAGGGAAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGGGGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGG ] [+] EMBL BX603447 [ CAGAGGGAGCGTGTTGGGGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAGCGTGTTTTTTTTGGAGGTTTCGTGTATGTTTGAGTGTTTGTAGTACAGCAGTATGAACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCAATCACATGGTTCGCATGTTGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCAACAATTAAGATATTTATAGATTGATTGTATTATAGGCAAGCGGCAAGCGGAGTAAACACACAAGCTGCTACAATTATGTGGCGCAAAACGAAGGCAAACAGATACGAGATTTGCCCTAGATTCTCCCGATGGGTGGTGATATAAAGCCGAGTGTACAGCGCATCGTGCATGCGACGCTGTGAGAGTAAAAAAGAAGCATCGATCTATTATAGAACCCACTGTACACCGTAATGCATGCCCTTACTCAAAAGAATAATATACATATTTATTATCATAATATCTAACTGCACACAGGTCACGGGCCAATCTGAGAGACACAAATTAAA] consensusID : consensus_4697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [NCTACATAGAAAGGGGAAAGGGAAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGGGGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAGCGTGTTTTTTTTTTTTTGGAGGTTTCGTGTATGTTTCAGTGTTTGTAGTACAACAGTATGAACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCNATCACATGGTTCGCATGTNGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCACAATTANGATATTNATAGATNGATTGTATNATAGGCAAGCGCAAGCGAGTAACACACAAGCTGCTANNATATGTGGCGCAAACGAGGCAANCAGATACGANATTGGCCCAGATCTCCGATGGTGTGATATAAGCNCGTGTCGCGCTGTCTCGCCGGAGAGTAAAAGAAGTNACATATGACCCGTCCGATCTCCTCC] [+] EMBL BX619296 [NCTACATAGAAAGGGGAAAGGGAAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGGGGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAGCGTGTTTTTTTTTTTTTGGAGGTTTCGTGTATGTTTCAGTGTTTGTAGTACAACAGTATGAACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCNATCACATGGTTCGCATGTNGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCACAATTANGATATTNATAGATNGATTGTATNATAGGCAAGCGCAAGCGAGTAACACACAAGCTGCTANNATATGTGGCGCAAACGAGGCAANCAGATACGANATTGGCCCAGATCTCCGATGGTGTGATATAAGCNCGTGTCGCGCTGTCTCGCCGGAGAGTAAAAGAAGTNACATATGACCCGTCCGATCTCCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4697#0 CCGCACTATCACGTAAAATTACTTATCATATTGGGACACGCATCGTAATGCTATAGAGCT 60 consensus_4697#1 ------------------------------------------------------------ consensus_4697#0 AGACGCAGTACAATCTAGAGGAAAGCATGAAGAACTTCAAAACAAGTATGTGTGTAAACG 120 consensus_4697#1 ------------------------------------------------------------ consensus_4697#0 CTCTCCTGCGCGTTATGTCGTGCATATCCAGATGCTTCTCAGAGACTTCAGAACAAATTA 180 consensus_4697#1 ------------------------------------------------------------ consensus_4697#0 AGTAATTTAAAAACAAAATGCACTGTTTTAGATGAAAGCTAAACGCTAGACGAAATTATA 240 consensus_4697#1 ------------------------------------------------------------ consensus_4697#0 AAAGTGCACCCAAGCTAGTAGAAAAGGTGAAAAACGGAAAGGACGTTATATACACATACA 300 consensus_4697#1 ------------------------------------------------------------ consensus_4697#0 GTTTGTGCAACCGATCGTCACTGTCATGTTGGAGTTAATGTGCTGTTGCGTGTTGTAGAA 360 consensus_4697#1 ------------------------------------------------------------ consensus_4697#0 GAAGAAATAGTAGCAAATAGTAATTAGATAACAACTGTAGCACATAGAAAGGGGAAAGGG 420 consensus_4697#1 --------------------------------------NCTACATAGAAAGGGGAAAGGG 22 ******************* consensus_4697#0 AAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGG 480 consensus_4697#1 AAAGAACCTTGTTGTATTAAGAAGCTAACATTAACGACGATTGCAGAGGGAGCGTGTTGG 82 ************************************************************ consensus_4697#0 GGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAG 540 consensus_4697#1 GGCCCCCTACTTAAGGGCACACGAACTTGTAAGTAAGGTACGGGGGAAAAAGGTCCGCAG 142 ************************************************************ consensus_4697#0 CGTGTTTTTTTT-----GGAGGTTTCGTGTATGTTTGAGTGTTTGTAGTACAGCAGTATG 595 consensus_4697#1 CGTGTTTTTTTTTTTTTGGAGGTTTCGTGTATGTTTCAGTGTTTGTAGTACAACAGTATG 202 ************ ******************* *************** ******* consensus_4697#0 AACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCAATC 655 consensus_4697#1 AACACAGAAAACACGCAATAGGAGTTAGTGAAGCTTCCAAACTGGCGCGGAAATGCNATC 262 ******************************************************** *** consensus_4697#0 ACATGGTTCGCATGTTGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCAACAATT 715 consensus_4697#1 ACATGGTTCGCATGTNGGGCAGCACGACGCACGGCGCTGAGAGGCACCGATTCA-CAATT 321 *************** ************************************** ***** consensus_4697#0 AAGATATTTATAGATTGATTGTATTATAGGCAAGCGGCAAGCGGAGTAAACACACAAGCT 775 consensus_4697#1 ANGATATTNATAGATNGATTGTATNATAGGCAAGCG-CAAGCG-AGTAA-CACACAAGCT 378 * ****** ****** ******** *********** ****** ***** ********** consensus_4697#0 GCTACAATTATGTGGCGCAAAACGAAGGCAAACAGATACGAGATTTGCCCTAGATTCTCC 835 consensus_4697#1 GCTANNAT-ATGTGGCGCAAA--CGAGGCAANCAGATACGANATTGGCCC-AGATCT--C 432 **** ** ************ ****** ********* *** **** **** * consensus_4697#0 CGATGGGTGGTGATATAAAGCCGAGTGTACAGCGCATCGTGCATGCGACGCTGTGAGAGT 895 consensus_4697#1 CGATGGT--GTGATATAAGCNCGTGT-----------CGCGC-TGTCTCGCCG-GAGAGT 477 ****** ********* ** ** ** ** ** *** * ****** consensus_4697#0 AAAA-AAGAAGCAT-CGATCTATTATAGAACCCACTGTACACCGTAATGCATGCCCTTAC 953 consensus_4697#1 AAAAGAAGTNACATATGACCCGTCCGATCTCCTCC------------------------- 512 **** *** *** ** * * * ** * consensus_4697#0 TCAAAAGAATAATATACATATTTATTATCATAATATCTAACTGCACACAGGTCACGGGCC 1013 consensus_4697#1 ------------------------------------------------------------ consensus_4697#0 AATCTGAGAGACACAAATTAAA 1035 consensus_4697#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||