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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 749 fasta sequence
[CCGCCCACGCGTCCGCCGCGAAGGTGTTTACGTTCATTATCATACCGTGCCACGGTCTGCATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGAAAGAAGCAAAAAAATCAACCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGTGGAAGCTGCCGAAAGGATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTACCATAGTGTGTGGTGGTGATCTTGAAAAACCTTCTACCCCTTGCTTGCTGGTCGTGTCCCGCACTGAGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTAAACAAAAAAGTAAGGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAAT-----AGAGAAACCCGTGATCCTTGGACGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGAT-AACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAATCTACGGCGTGGCGAGCACGATCAATGCGGCCAACTA]
[+] EMBL BM616004 [CCGCCCACGCGTCCGCCGCGAAGGTGTTTACGTTCATTATCATACCGTGCCACGGTCTGCATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGAAAGAAGCAAAAAAATCAACCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGTGGAAGCTGCCGAAAGGATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTACCATAGTGTGTGGTGGTGATCTTGAAAAACCTTCTACCCCTTGCTTGCTGGTCGTGTCCCGCACTGAGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTAAACAAAAAAGTAAGGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAAT AGAGAAACCCGTGATCCTTGGACGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGAT AACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGA ]
[+] EMBL BM590240 [ ccgGGTCTGCATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGACAAAGGCAAAAAAAT AGCCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGAGGAAGCTGCAGAAAGGATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTA CATAGTGTGTGGTGGTGATCTTGAAAAAACTTCTACCCCTTGC TCGTGTCCCGCATTGAGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTATACAAAAAAGTAAGGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAATAGAAGAGAGAAACCCGTGATCCTTGGACGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGATAAACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAATCTACGGCGTGGCGAGCACGATCAATGCGGCCAACTA]
consensusID : consensus_4699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence
[AGGCANGAATCGGCACGATGGAGAGAAACCGTGATCCTTGNCNCGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTCGCGATAAACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAAGTCTACGGCGTGGCGAGCACGATCAATGCGGGCAACTATGTGCTATTCTCTCTAGCGCTGGAAAAGGTCCAGCAGCTCGGNCATCCGGATGCGACGCGGGTGTACACGGAGCAGCTGCTGGAGCTGCACCGTGGCCAGGGTATGGAGATCTACTGGCGCGACAACTACGCCTGNCCGACCGAGACGGAGTACAAGGCAGATGACGATACGGAAAACGGGCGGCCTGTTCATGCTGGCGATCCGGCTGATGCAGCTGTNNCTAGCGAGAAATCGCAACANGANTTTCAGCCAAGGCTGAACCGGCGGATCCCTAGGGGCTGTAACTTCCAGATACGGGACGACTTNACCNTGGCAACCCTGAGGC]
[+] EMBL BX467787 [AGGCANGAATCGGCACGATGGAGAGAAACCGTGATCCTTGNCNCGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTCGCGATAAACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAAGTCTACGGCGTGGCGAGCACGATCAATGCGGGCAACTATGTGCTATTCTCTCTAGCGCTGGAAAAGGTCCAGCAGCTCGGNCATCCGGATGCGACGCGGGTGTACACGGAGCAGCTGCTGGAGCTGCACCGTGGCCAGGGTATGGAGATCTACTGGCGCGACAACTACGCCTGNCCGACCGAGACGGAGTACAAGGCAGATGACGATACGGAAAACGGGCGGCCTGTTCATGCTGGCGATCCGGCTGATGCAGCTGTNNCTAGCGAGAAATCGCAACANGANTTTCAGCCAAGGCTGAACCGGCGGATCCCTAGGGGCTGTAACTTCCAGATACGGGACGACTTNACCNTGGCAACCCTGAGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4699#0 CCGCCCACGCGTCCGCCGCGAAGGTGTTTACGTTCATTATCATACCGTGCCACGGTCTGC 60
consensus_4699#1 ------------------------------------------------------------
consensus_4699#0 ATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGAAAGAAGCAAAA 120
consensus_4699#1 ------------------------------------------------------------
consensus_4699#0 AAATCAACCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGTGGAAGCTGCCGAAAGG 180
consensus_4699#1 ------------------------------------------------------------
consensus_4699#0 ATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTACCATAG 240
consensus_4699#1 ------------------------------------------------------------
consensus_4699#0 TGTGTGGTGGTGATCTTGAAAAACCTTCTACCCCTTGCTTGCTGGTCGTGTCCCGCACTG 300
consensus_4699#1 ------------------------------------------------------------
consensus_4699#0 AGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTAAACAAAAAAGTAA 360
consensus_4699#1 ------------------------------------------------------------
consensus_4699#0 GGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAATAGAGA-AACCCGTGATCCTTGG-A 418
consensus_4699#1 -----------------AGGCANGAATCGGCACGATGGAGAGAAACCGTGATCCTTGNCN 43
* * * ** **** ** ************
consensus_4699#0 CGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCA 478
consensus_4699#1 CGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCA 103
************************************************************
consensus_4699#0 TCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCC 538
consensus_4699#1 TCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCC 163
************************************************************
consensus_4699#0 GGAAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGATAA-CCATTGGCTACACATTCCGAAC 597
consensus_4699#1 GGAAAGCAGGTCCGGTCGAAGCTAGCGCTCGCGATAAACCATTGGCTACACATTCCGAAC 223
***************************** ******* **********************
consensus_4699#0 GACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATC 657
consensus_4699#1 GACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATC 283
************************************************************
consensus_4699#0 GACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAA-TCTA 716
consensus_4699#1 GACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAAGTCTA 343
******************************************************* ****
consensus_4699#0 CGGCGTGGCGAGCACGATCAATGCGGCCAACTA--------------------------- 749
consensus_4699#1 CGGCGTGGCGAGCACGATCAATGCGGGCAACTATGTGCTATTCTCTCTAGCGCTGGAAAA 403
************************** ******
consensus_4699#0 ------------------------------------------------------------
consensus_4699#1 GGTCCAGCAGCTCGGNCATCCGGATGCGACGCGGGTGTACACGGAGCAGCTGCTGGAGCT 463
consensus_4699#0 ------------------------------------------------------------
consensus_4699#1 GCACCGTGGCCAGGGTATGGAGATCTACTGGCGCGACAACTACGCCTGNCCGACCGAGAC 523
consensus_4699#0 ------------------------------------------------------------
consensus_4699#1 GGAGTACAAGGCAGATGACGATACGGAAAACGGGCGGCCTGTTCATGCTGGCGATCCGGC 583
consensus_4699#0 ------------------------------------------------------------
consensus_4699#1 TGATGCAGCTGTNNCTAGCGAGAAATCGCAACANGANTTTCAGCCAAGGCTGAACCGGCG 643
consensus_4699#0 -----------------------------------------------------------
consensus_4699#1 GATCCCTAGGGGCTGTAACTTCCAGATACGGGACGACTTNACCNTGGCAACCCTGAGGC 702
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||