These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4708#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CCGCCCACGCGTCCGGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCGATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCTCCGAAGTGAGGTGTCCTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCTTACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACAAAGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCTATGTGTTCTCCCTTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGACCTCATTTTGGTTCCGATTCTTCGATGGTCCCCTAAAACAATTTCCCATTTTTGTGACATTGCGTCATAAGTGGCAGCATTGTACAATGTCTTTTTGTTTTTGCTACTTCTTCTTCCAGTATATGGGATATGGCTCTTACGAAATAAGATTGTAATGTAAAATATTCGCACTCGCGGTTAGTCAAGAAAGTATTAAAGGGGCATATTTACTTACATAGTATAGATAAATAAAAAAAAAAAAAAACACTCGGGGGCTGTAATGCAGAACTCGGGCCTCGGGGGTCACTCGTCTCGGTAGAG] [+] EMBL BM647842 [CCGCCCACGCGTCCGGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCGATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCTCCGAAGTGAGGTGTCCTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCTTACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACAAAGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCTATGTGTTCTCCCTTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGACCTCATTTTGGTTCCGATTCTTCGATGGTCCCCTAAAACAATTTCCCATTTTTGTGACATTGCGTCATAAGTGGCAGCATTGTACAATGTCTTTTTGTTTTTGCTACTTCTTCTTCCAGTATATGGGATATGGCTCTTACGAAATAAGATTGTAATGTAAAATATTCGCACTCGCGGTTAGTCAAGAAAGTATTAAAGGGGCATATTTACTTACATAGTATAGATAAATAAAAAAAAAAAAAAACACTCGGGGGCTGTAATGCAGAACTCGGGCCTCGGGGGTCACTCGTCTCGGTAGAG] consensusID : consensus_4708#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [CCGCGGACGCGTGGGCACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAGTCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCACACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAACGCACTATGGAAGCAAACTAGCACGTACTTGAAATAAAAAATTAAAACAAAGCAAACAAAAAAATAAGAAAACTTACATGATGTAAGTAAAGAAAGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCGATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCTCCGAAGTGAGGTGTCCTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCTTACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACAAAGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCTATGTGTTCTCCCGTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGACCTCATTTTGGTTCCGATTCTTCGATGGTCCCCTAAAACAATT] [+] EMBL BM583627 [CCGCGGACGCGTGGGCACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAGTCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCACACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAACGCACTATGGAAGCAAACTAGCACGTACTTGAAATAAAAAATTAAAACAAAGCAAACAAAAAAATAAGAAAACTTACATGATGTAAGTAAAGAAAGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCGATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCTCCGAAGTGAGGTGTCCTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCTTACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACAAAGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCTATGTGTTCTCCCGTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGACCTCATTTTGGTTCCGATTCTTCGATGGTCCCCTAAAACAATT] consensusID : consensus_4708#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [AATGACAACAAGTTTCGATTCTCGATTCTTTAACGCTAGCAAATCGAAAAGGAGGGGCTAATGGTAGTGAACAAGGAGAATTACCGTGTTGCAAGTGAAATATTTCAAGTACTAGATCCGAGATAGTATCTACAATAGTTTAATAACACTCGGTAGTGACCAGTGTGTTGCGCATGACACACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAGTCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCACACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAA] [+] EMBL BM630769 [AATGACAACAAGTTTCGATTCTCGATTCTTTAACGCTAGCAAATCGAAAAGGAGGGGCTAATGGTAGTGAACAAGGAGAATTACCGTGTTGCAAGTGAAATATTTCAAGTACTAGATCCGAGATAGTATCTACAATAGTTTAATAACACTCGGTAGTGACCAGTGTGTTGCGCATGACACACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAGTCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCACACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4708#0 ------------------------------------------------------------ consensus_4708#1 CCGCGGACGCGTGGGCACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAG 60 consensus_4708#2 ------------------------------------------------------------ consensus_4708#0 ------------------------------------------------------------ consensus_4708#1 TCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCAC 120 consensus_4708#2 ------------------------------------------------------------ consensus_4708#0 ------------------------------------------------------------ consensus_4708#1 ACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAACGCACTATGGA 180 consensus_4708#2 ------------------------------------------------------------ consensus_4708#0 ------------------------------------------------------------ consensus_4708#1 AGCAAACTAGCACGTACTTGAAATAAAAAATTAAAACAAAGCAAACAAAAAAATAAGAAA 240 consensus_4708#2 ------------------------------------------------------------ consensus_4708#0 ---------CCGCCCACGCGTCCGGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCG 51 consensus_4708#1 ACTTACATGATGTAAGTAAAGAAAGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCG 300 consensus_4708#2 -----------------------------------------------------------A 1 consensus_4708#0 ATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCT-CCGAAGTGAGGTGT 110 consensus_4708#1 ATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCT-CCGAAGTGAGGTGT 359 consensus_4708#2 ATGA--CAACAAGTTTCGATTCTCGATTC--TTTAACGCTAGCAAATCGAAAAGGAGGGG 57 **** ** * ** * ** * * * ****** * * **** * * * consensus_4708#0 CCTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCT 170 consensus_4708#1 CCTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCT 419 consensus_4708#2 CTAATGGTAGTGAACAAGGAGAATTA--CCGTGTTGCAA------GTGAAATATTTCAAG 109 * * ** * ** ** ** * * ** ** * ** ** consensus_4708#0 TACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACA 230 consensus_4708#1 TACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACA 479 consensus_4708#2 TACTAGAT-CCGAGATAGTATC----TACAATAGTTTAATAACACTCGGTAGTGACCAGT 164 *** * ** * * ***** *** ****** * ** ** * consensus_4708#0 AAGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCT 290 consensus_4708#1 AAGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCT 539 consensus_4708#2 GTGTTGCGCATGACACACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAG 224 * * * * ** * * * * * * * * consensus_4708#0 ATGTGTTCTCCCTTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGAC 350 consensus_4708#1 ATGTGTTCTCCCGTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGAC 599 consensus_4708#2 TCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCAC 284 ** ** **** * **** * * * *** ** *** ***** ** consensus_4708#0 CTCATTTTGGTTCCGATTCTTCGATGGTCCCCTAA-AACAATTTCCCATTTTTGTGACAT 409 consensus_4708#1 CTCATTTTGGTTCCGATTCTTCGATGGTCCCCTAA-AACAATT----------------- 641 consensus_4708#2 ACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAA----------- 333 * *** * ** **** * consensus_4708#0 TGCGTCATAAGTGGCAGCATTGTACAATGTCTTTTTGTTTTTGCTACTTCTTCTTCCAGT 469 consensus_4708#1 ------------------------------------------------------------ consensus_4708#2 ------------------------------------------------------------ consensus_4708#0 ATATGGGATATGGCTCTTACGAAATAAGATTGTAATGTAAAATATTCGCACTCGCGGTTA 529 consensus_4708#1 ------------------------------------------------------------ consensus_4708#2 ------------------------------------------------------------ consensus_4708#0 GTCAAGAAAGTATTAAAGGGGCATATTTACTTACATAGTATAGATAAATAAAAAAAAAAA 589 consensus_4708#1 ------------------------------------------------------------ consensus_4708#2 ------------------------------------------------------------ consensus_4708#0 AAAACACTCGGGGGCTGTAATGCAGAACTCGGGCCTCGGGGGTCACTCGTCTCGGTAGAG 649 consensus_4708#1 ------------------------------------------------------------ consensus_4708#2 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||