cluster # 471

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Anopheles gambiae
cluster # 471 cluster # 471 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_471#0 length = 697 sequences # 1

consensus_471#1 length = 637 sequences # 1

consensusID : consensus_471#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGGGTAGATCACATTTTACACTTTCACTTTTAAATTATCATCCCATTAATAATCGGGGAAAAGGTAAGCGCATTTAAATTATGAGTGAAATAGCACCGGACAGTGCCGATGTCGCAGCTCCCACCGTAGAGAAGAAAAGCCACCGGGTACAGGTGCGTGTACCACCGCCGGAGTTTTCCAGTCAAACGGAGCTACACCCTGGCAAAAGTCCAGGAGTGAGGGAAAGCTTGCAGCCGAACGTTTGCGAACCGCAACAGGTTGGCATCTTAAGGGGAGCAGCAGCGTACACTAAATCATACCACAACAGTGATGATATCTTGAAACATCTCGCCGTTGCATATCTGTTCACCATCCTGAGGTCACCCCCGAAATGGTCACCAGAAACGTTCTCCGAAATAGTGGCCCAGGAGTCGTCGATCGCCAAAGCCCCACTGGAAACCAAGCTCCCAATCTGTCGAAACGACAAAACGTACAACATTCATCTCTCGAGCACGCTCGTAAAGGGACGCTTCGTAACACCGCAGGACCGGTCGGATCACGTTCACCTAAGCATCCATCAGGCACTATCGCGCATCAAGCGCGGAAAGGCAGCCGTGTGGGAAGTGTGACGGACACTTCTTCCTCATACGCCGTCTCTTAACCGGCTGGTACTTCTACACCCCGAGCCTGC]

[+] EMBL BM623279             [CCGCGGACGCGTGGGCGGACGCGTGGGCGGGTAGATCACATTTTACACTTTCACTTTTAAATTATCATCCCATTAATAATCGGGGAAAAGGTAAGCGCATTTAAATTATGAGTGAAATAGCACCGGACAGTGCCGATGTCGCAGCTCCCACCGTAGAGAAGAAAAGCCACCGGGTACAGGTGCGTGTACCACCGCCGGAGTTTTCCAGTCAAACGGAGCTACACCCTGGCAAAAGTCCAGGAGTGAGGGAAAGCTTGCAGCCGAACGTTTGCGAACCGCAACAGGTTGGCATCTTAAGGGGAGCAGCAGCGTACACTAAATCATACCACAACAGTGATGATATCTTGAAACATCTCGCCGTTGCATATCTGTTCACCATCCTGAGGTCACCCCCGAAATGGTCACCAGAAACGTTCTCCGAAATAGTGGCCCAGGAGTCGTCGATCGCCAAAGCCCCACTGGAAACCAAGCTCCCAATCTGTCGAAACGACAAAACGTACAACATTCATCTCTCGAGCACGCTCGTAAAGGGACGCTTCGTAACACCGCAGGACCGGTCGGATCACGTTCACCTAAGCATCCATCAGGCACTATCGCGCATCAAGCGCGGAAAGGCAGCCGTGTGGGAAGTGTGACGGACACTTCTTCCTCATACGCCGTCTCTTAACCGGCTGGTACTTCTACACCCCGAGCCTGC]




>consensus_471#0
CCGCGGACGCGTGGGCGGACGCGTGGGCGGGTAGATCACATTTTACACTTTCACTTTTAA
ATTATCATCCCATTAATAATCGGGGAAAAGGTAAGCGCATTTAAATTATGAGTGAAATAG
CACCGGACAGTGCCGATGTCGCAGCTCCCACCGTAGAGAAGAAAAGCCACCGGGTACAGG
TGCGTGTACCACCGCCGGAGTTTTCCAGTCAAACGGAGCTACACCCTGGCAAAAGTCCAG
GAGTGAGGGAAAGCTTGCAGCCGAACGTTTGCGAACCGCAACAGGTTGGCATCTTAAGGG
GAGCAGCAGCGTACACTAAATCATACCACAACAGTGATGATATCTTGAAACATCTCGCCG
TTGCATATCTGTTCACCATCCTGAGGTCACCCCCGAAATGGTCACCAGAAACGTTCTCCG
AAATAGTGGCCCAGGAGTCGTCGATCGCCAAAGCCCCACTGGAAACCAAGCTCCCAATCT
GTCGAAACGACAAAACGTACAACATTCATCTCTCGAGCACGCTCGTAAAGGGACGCTTCG
TAACACCGCAGGACCGGTCGGATCACGTTCACCTAAGCATCCATCAGGCACTATCGCGCA
TCAAGCGCGGAAAGGCAGCCGTGTGGGAAGTGTGACGGACACTTCTTCCTCATACGCCGT
CTCTTAACCGGCTGGTACTTCTACACCCCGAGCCTGC

consensusID : consensus_471#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [CCGCCCACGCGTCCGAATTGTTCTGTGTAGTAAATTACGGGTAGATCACATTTCATACCTTCACTTCTAAATTATCATCCCTTTAATAATCGGGGAAAAAGTAAGCGCATTTAAATTATGAGTGAAATAGCACCGGACAGTGCCGATGTCGCAGCTCCCACCGTAGAGAAGAAAAGCCACCGGGTACAGGTGCGTGTACCACCGCCGGAGTTTTCCAGTCAAACGGAGCTACACCCTGGCAAAAGTCCAGGAGTGAGGGAAAGCTTGCAGCCGAACGTTTGCGAACCGCAACAGGTTGGCATCTTAAGGGGAGCAGCAGCGTACACTAAATCATACCGCAACAGTGATGATATCCTTAAACATCTCGCCGTTGTTTATCTGTTCACCATCCTGAAGTCACCCCCGAAATGGTCACCAGAAACGTTCTCCGAAATAGTGGCCCAGGAGTCGTCGATCGCCAAAGCCCCACTGGAAACCAAGCTCCCAATCCGTCGAAACGACAAAACGTACAACATTCATCTCTCGAGCACGCTCGTAAAGGGACGCTTCGTAACACCGCAGGACCGGTCGGACCATGTTCATCTAAGCATCCATCAGGCACTATCCCGCATTAAGCGCGGAAAGGCAGCCCGTGTGG]

[+] EMBL BM652432             [CCGCCCACGCGTCCGAATTGTTCTGTGTAGTAAATTACGGGTAGATCACATTTCATACCTTCACTTCTAAATTATCATCCCTTTAATAATCGGGGAAAAAGTAAGCGCATTTAAATTATGAGTGAAATAGCACCGGACAGTGCCGATGTCGCAGCTCCCACCGTAGAGAAGAAAAGCCACCGGGTACAGGTGCGTGTACCACCGCCGGAGTTTTCCAGTCAAACGGAGCTACACCCTGGCAAAAGTCCAGGAGTGAGGGAAAGCTTGCAGCCGAACGTTTGCGAACCGCAACAGGTTGGCATCTTAAGGGGAGCAGCAGCGTACACTAAATCATACCGCAACAGTGATGATATCCTTAAACATCTCGCCGTTGTTTATCTGTTCACCATCCTGAAGTCACCCCCGAAATGGTCACCAGAAACGTTCTCCGAAATAGTGGCCCAGGAGTCGTCGATCGCCAAAGCCCCACTGGAAACCAAGCTCCCAATCCGTCGAAACGACAAAACGTACAACATTCATCTCTCGAGCACGCTCGTAAAGGGACGCTTCGTAACACCGCAGGACCGGTCGGACCATGTTCATCTAAGCATCCATCAGGCACTATCCCGCATTAAGCGCGGAAAGGCAGCCCGTGTGG]




>consensus_471#1
CCGCCCACGCGTCCGAATTGTTCTGTGTAGTAAATTACGGGTAGATCACATTTCATACCT
TCACTTCTAAATTATCATCCCTTTAATAATCGGGGAAAAAGTAAGCGCATTTAAATTATG
AGTGAAATAGCACCGGACAGTGCCGATGTCGCAGCTCCCACCGTAGAGAAGAAAAGCCAC
CGGGTACAGGTGCGTGTACCACCGCCGGAGTTTTCCAGTCAAACGGAGCTACACCCTGGC
AAAAGTCCAGGAGTGAGGGAAAGCTTGCAGCCGAACGTTTGCGAACCGCAACAGGTTGGC
ATCTTAAGGGGAGCAGCAGCGTACACTAAATCATACCGCAACAGTGATGATATCCTTAAA
CATCTCGCCGTTGTTTATCTGTTCACCATCCTGAAGTCACCCCCGAAATGGTCACCAGAA
ACGTTCTCCGAAATAGTGGCCCAGGAGTCGTCGATCGCCAAAGCCCCACTGGAAACCAAG
CTCCCAATCCGTCGAAACGACAAAACGTACAACATTCATCTCTCGAGCACGCTCGTAAAG
GGACGCTTCGTAACACCGCAGGACCGGTCGGACCATGTTCATCTAAGCATCCATCAGGCA
CTATCCCGCATTAAGCGCGGAAAGGCAGCCCGTGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_471#0      CCGCGGACGCGT--GGGCGGACGCGTGGG--------CGGGTAGATCACATTTTACACTT 50
consensus_471#1      CCGCCCACGCGTCCGAATTGTTCTGTGTAGTAAATTACGGGTAGATCACATTTCATACCT 60
                     ****  ******  *    *    ***          **************** * ** *

consensus_471#0      TCACTTTTAAATTATCATCCCATTAATAATCGGGGAAAAGGTAAGCGCATTTAAATTATG 110
consensus_471#1      TCACTTCTAAATTATCATCCCTTTAATAATCGGGGAAAAAGTAAGCGCATTTAAATTATG 120
                     ****** ************** ***************** ********************

consensus_471#0      AGTGAAATAGCACCGGACAGTGCCGATGTCGCAGCTCCCACCGTAGAGAAGAAAAGCCAC 170
consensus_471#1      AGTGAAATAGCACCGGACAGTGCCGATGTCGCAGCTCCCACCGTAGAGAAGAAAAGCCAC 180
                     ************************************************************

consensus_471#0      CGGGTACAGGTGCGTGTACCACCGCCGGAGTTTTCCAGTCAAACGGAGCTACACCCTGGC 230
consensus_471#1      CGGGTACAGGTGCGTGTACCACCGCCGGAGTTTTCCAGTCAAACGGAGCTACACCCTGGC 240
                     ************************************************************

consensus_471#0      AAAAGTCCAGGAGTGAGGGAAAGCTTGCAGCCGAACGTTTGCGAACCGCAACAGGTTGGC 290
consensus_471#1      AAAAGTCCAGGAGTGAGGGAAAGCTTGCAGCCGAACGTTTGCGAACCGCAACAGGTTGGC 300
                     ************************************************************

consensus_471#0      ATCTTAAGGGGAGCAGCAGCGTACACTAAATCATACCACAACAGTGATGATATCTTGAAA 350
consensus_471#1      ATCTTAAGGGGAGCAGCAGCGTACACTAAATCATACCGCAACAGTGATGATATCCTTAAA 360
                     ************************************* **************** * ***

consensus_471#0      CATCTCGCCGTTGCATATCTGTTCACCATCCTGAGGTCACCCCCGAAATGGTCACCAGAA 410
consensus_471#1      CATCTCGCCGTTGTTTATCTGTTCACCATCCTGAAGTCACCCCCGAAATGGTCACCAGAA 420
                     *************  ******************* *************************

consensus_471#0      ACGTTCTCCGAAATAGTGGCCCAGGAGTCGTCGATCGCCAAAGCCCCACTGGAAACCAAG 470
consensus_471#1      ACGTTCTCCGAAATAGTGGCCCAGGAGTCGTCGATCGCCAAAGCCCCACTGGAAACCAAG 480
                     ************************************************************

consensus_471#0      CTCCCAATCTGTCGAAACGACAAAACGTACAACATTCATCTCTCGAGCACGCTCGTAAAG 530
consensus_471#1      CTCCCAATCCGTCGAAACGACAAAACGTACAACATTCATCTCTCGAGCACGCTCGTAAAG 540
                     ********* **************************************************

consensus_471#0      GGACGCTTCGTAACACCGCAGGACCGGTCGGATCACGTTCACCTAAGCATCCATCAGGCA 590
consensus_471#1      GGACGCTTCGTAACACCGCAGGACCGGTCGGACCATGTTCATCTAAGCATCCATCAGGCA 600
                     ******************************** ** ***** ******************

consensus_471#0      CTATCGCGCATCAAGCGCGGAAAGGCAGCC-GTGTGGGAAGTGTGACGGACACTTCTTCC 649
consensus_471#1      CTATCCCGCATTAAGCGCGGAAAGGCAGCCCGTGTGG----------------------- 637
                     ***** ***** ****************** ******                       

consensus_471#0      TCATACGCCGTCTCTTAACCGGCTGGTACTTCTACACCCCGAGCCTGC 697
consensus_471#1      ------------------------------------------------