These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 722 fasta sequence [GACCCACGCGTCCGCCCACGCGTCCGAGCGGAGGTGTCTCGCAGGTTGCTCGCGTCCCTGTGTTTTTTGTTGTTTTTTTGGTTATACACACGGTGCCGCGATGAGTACGTGCGCGGGGGTTTAGCGGTGGTTTAGTGCTAAAAAGAAGAAGAAAATAAAACCCGTTTTCCGTCTTGTAAGCGCACCGAAAAACGGCAGACCGAGCAGAATCGAGTTACCCGCGGGAGTCCCGGGAGCGTAGAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAGCCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACCGGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTACGTCGTTCTTACGCCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGTCTCCGTTGATAGCCCCCAGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCACCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAAATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCATCCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCCTACACCGCACACACACAC] [+] EMBL BM631454 [GACCCACGCGTCCGCCCACGCGTCCGAGCGGAGGTGTCTCGCAGGTTGCTCGCGTCCCTGTGTTTTTTGTTGTTTTTTTGGTTATACACACGGTGCCGCGATGAGTACGTGCGCGGGGGTTTAGCGGTGGTTTAGTGCTAAAAAGAAGAAGAAAATAAAACCCGTTTTCCGTCTTGTAAGCGCACCGAAAAACGGCAGACCGAGCAGAATCGAGTTACCCGCGGGAGTCCCGGGAGCGTAGAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAGCCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACCGGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTACGTCGTTCTTACGCCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGTCTCCGTTGATAGCCCCCAGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCACCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTC ] [+] EMBL BM593519 [ ccgCGAGCGGAGGTGTCTCGCAGGTTGCTCGCGTCCCTGTGTTTTTTGTTGTTTTTTTGGTTATACACACGGTGCCGCGATGAGTACGTGCGCGGGGGTTTAGCGGTGGTTTAGTGCTAAAAAGAAGAAGAAAATAAAACCCGTTTTCCGTCTTGTAAGCGCACCGAAAAACGGCAGACCGAGCAGAATCGAGTTACCCGCGGGAGTCCCGGGAGCGTAGAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAGCCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACCGGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTACGTCGTTCTTACGCCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGTCTCCGTTGATAGCCCCCAGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCACCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAAATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCATCCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCCTACACCGCACACACACAC] consensusID : consensus_4713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGCCCACGCGTCCGGCGGGAGTCCCGGGAGCGTAGAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAGCCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACCGGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTACGTCGGTCTTACGTCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGTCTCCGTTGATAGCCCCCGGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCACCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAAATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCATCCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCGCACACACACACACACACGCGCGCACTCACACGCGGGCACATGTTGCTGCAGTGCATGCATCTTCGGTCAAGCAAAGGGGCACACCACATCCTTATCATGGTGTAGTTTTTTAAAGCAAC] [+] EMBL BM590893 [CCGCCCACGCGTCCGGCGGGAGTCCCGGGAGCGTAGAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAGCCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACCGGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTACGTCGGTCTTACGTCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGTCTCCGTTGATAGCCCCCGGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCACCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAAATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCATCCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCGCACACACACACACACACGCGCGCACTCACACGCGGGCACATGTTGCTGCAGTGCATGCATCTTCGGTCAAGCAAAGGGGCACACCACATCCTTATCATGGTGTAGTTTTTTAAAGCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4713#0 GACCCACGCGTCCGCCCACGCGTCCGAGCGGAGGTGTCTCGCAGGTTGCTCGCGTCCCTG 60 consensus_4713#1 ------------------------------------------------------------ consensus_4713#0 TGTTTTTTGTTGTTTTTTTGGTTATACACACGGTGCCGCGATGAGTACGTGCGCGGGGGT 120 consensus_4713#1 ------------------------------------------------------------ consensus_4713#0 TTAGCGGTGGTTTAGTGCTAAAAAGAAGAAGAAAATAAAACCCGTTTTCCGTCTTGTAAG 180 consensus_4713#1 ------------------------------------------------------------ consensus_4713#0 CGCACCGAAAAACGGCAGACCGAGCAGAATCGAGTTACCCGCGGGAGTCCCGGGAGCGTA 240 consensus_4713#1 -------------------------CCGCCCACGCGTCCGGCGGGAGTCCCGGGAGCGTA 35 * * ** ******************** consensus_4713#0 GAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAG 300 consensus_4713#1 GAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAG 95 ************************************************************ consensus_4713#0 CCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACC 360 consensus_4713#1 CCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACC 155 ************************************************************ consensus_4713#0 GGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTA 420 consensus_4713#1 GGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTA 215 ************************************************************ consensus_4713#0 CGTCGTTCTTACGCCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGT 480 consensus_4713#1 CGTCGGTCTTACGTCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGT 275 ***** ******* ********************************************** consensus_4713#0 CTCCGTTGATAGCCCCCAGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCA 540 consensus_4713#1 CTCCGTTGATAGCCCCCGGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCA 335 ***************** ****************************************** consensus_4713#0 CCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAA 600 consensus_4713#1 CCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAA 395 ************************************************************ consensus_4713#0 ATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCAT 660 consensus_4713#1 ATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCAT 455 ************************************************************ consensus_4713#0 CCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCCTACAC-CGCACACACA 719 consensus_4713#1 CCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCGCACACACACACACACA 515 ******************************************* **** * ******** consensus_4713#0 CAC--------------------------------------------------------- 722 consensus_4713#1 CGCGCGCACTCACACGCGGGCACATGTTGCTGCAGTGCATGCATCTTCGGTCAAGCAAAG 575 * * consensus_4713#0 ------------------------------------------- consensus_4713#1 GGGCACACCACATCCTTATCATGGTGTAGTTTTTTAAAGCAAC 618 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||