These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence [CCGGAGCAACCAAACCGAACGGATCGAAAACAACAACACCCTCTGCCGGGCGCACGGTCCCGCAGCGTGGAACGCACAACGACAATCGGGTTAAGCAATAGCTCGAAGAAGCAAGAAACAAACAAAACAAAACAAAAAGAAGCAAAAATAAGGAAAAGAAAGGAAACGGAGAAACGAACGCTTGTGAACCACTCCAGTGTGTTGTTGTGGCGTGTGTGCGCGTACATGCTGCACCCAGTTTGATGTGTAAATGTTACATTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGGTGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAAACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAACCCTATTGCCGCCGGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTGATGCGCGATCGGTCTTCATCTCGCGTCGCTGTCGCTGTTTGTTGGTTGGGTGGACTCGACCCGCACAAACGAGGCGAGAGAAAGCGTCCAGGGCAAGCAAGTGAGTGAGTGGGCGATCGTAAGTGTGCGTGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGTGAATGTGCGTACCAACGGATTTGCTCTGGAGGCAGAAAAGCCACTGGATCTGGAGGACCTTCATCCGTCAATCAAGCATAAGAGCAGCACAGAACAGATCAACAGCACACAGACGTC] [+] EMBL BM637289 [CCGGAGCAACCAAACCGAACGGATCGAAAACAACAACACCCTCTGCCGGGCGCACGGTCCCGCAGCGTGGAACGCACAACGACAATCGGGTTAAGCAATAGCTCGAAGAAGCAAGAAACAAACAAAACAAAACAAAAAGAAGCAAAAATAAGGAAAAGAAAGGAAACGGAGAAACGAACGCTTGTGAACCACTCCAGTGTGTTGTTGTGGCGTGTGTGCGCGTACATGCTGCACCCAGTTTGATGTGTAAATGTTACATTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGGTGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAAACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAACCCTATTGCCGCCGGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTGATGCGCGATCGGTCTTCATCTCGCGTCGCTGTCGCTGTTTGTTGGTTGGGTGGACTCGACCCGCACAAACGAGGCGAGAGAAAGCGTCCAGGGCAAGCAAGTGAGTGAGTGGGCGATCGTAAGTGTGCGTGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGTGAATGTGCGTACCAACGGATTTGCTCTGGAGGCAGAAAAGCCACTGGATCTGGAGGACCTTCATCCGTCAATCAAGCATAAGAGCAGCACAGAACAGATCAACAGCACACAGACGTC] consensusID : consensus_4726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGGTGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGCCGGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTGATGCGCGATCTCCCCACACAGCACGGCCAGATGCCGCACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACGGACGACAGGGGGGCGCCGGGGCAGGGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCTGCTGCAGCTGATGGATCTTGGGGGGATGGGCCCGGGCGGCGGTGGCGGCACGATGCTGGCGGAGGCGGCCTGTTGAGCCGCGGGCCAGCTGGTGGGACCCGACCGTGGACGATTGCGTCCCGTGCCGGGTCTGTGCCGACCATCAGGTCGTGCTGCGCCCGTGCCAGGACTACATGAACACGGTGTGCGGCACGATGAAGGACCTGACGGCGTCGGCTCATCGCCCGTACCCCCATCTGCCCCGAGGGGAACGGTAACGGGATCGTG] [+] EMBL BM588704 [CCGCGGACGCGTGGGCGGACGCGTGGGTTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGGTGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGCCGGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTGATGCGCGATCTCCCCACACAGCACGGCCAGATGCCGCACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACGGACGACAGGGGGGCGCCGGGGCAGGGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCTGCTGCAGCTGATGGATCTTGGGGGGATGGGCCCGGGCGGCGGTGGCGGCACGATGCTGGCGGAGGCGGCCTGTTGAGCCGCGGGCCAGCTGGTGGGACCCGACCGTGGACGATTGCGTCCCGTGCCGGGTCTGTGCCGACCATCAGGTCGTGCTGCGCCCGTGCCAGGACTACATGAACACGGTGTGCGGCACGATGAAGGACCTGACGGCGTCGGCTCATCGCCCGTACCCCCATCTGCCCCGAGGGGAACGGTAACGGGATCGTG] consensusID : consensus_4726#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [TCCCCGAGGTTAACCCAACTATACGGTGTGCTGAGAGTGGTGTTTTGCNTATCTTAAAAAAACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGCGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTNATGCGCGATCTCCCCACACAGCACGGCAGATGCCGCACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACGGACGACAGGGGGGCGCCGGGGCAGTGGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCTGCTGCAGCTGATGGATCTGGGGGATGGGCCGNGCGGCGGTGGCGGCACGATGCTGGCGGAGCGGCCTGTGAGCCGCGGGCCAGGCTGGTGGGACCCGACCGTGGACGATTGCGTCCCGTGCCGGGTCTGTGCCGACACATCAGGTCGTGCTGCGCCCGTGCCAGGGA] [+] EMBL AL934513 [TCCCCGAGGTTAACCCAACTATACGGTGTGCTGAGAGTGGTGTTTTGCNTATCTTAAAAAAACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGCGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTNATGCGCGATCTCCCCACACAGCACGGCAGATGCCGCACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACGGACGACAGGGGGGCGCCGGGGCAGTGGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCTGCTGCAGCTGATGGATCTGGGGGATGGGCCGNGCGGCGGTGGCGGCACGATGCTGGCGGAGCGGCCTGTGAGCCGCGGGCCAGGCTGGTGGGACCCGACCGTGGACGATTGCGTCCCGTGCCGGGTCTGTGCCGACACATCAGGTCGTGCTGCGCCCGTGCCAGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4726#1 ------------------------------------------------------------ consensus_4726#2 ------------------------------------------------------------ consensus_4726#0 CCGGAGCAACCAAACCGAACGGATCGAAAACAACAACACCCTCTGCCGGGCGCACGGTCC 60 consensus_4726#1 ------------------------------------------------------------ consensus_4726#2 ------------------------------------------------------------ consensus_4726#0 CGCAGCGTGGAACGCACAACGACAATCGGGTTAAGCAATAGCTCGAAGAAGCAAGAAACA 120 consensus_4726#1 ------------------------------------------------------------ consensus_4726#2 ------------------------------------------------------------ consensus_4726#0 AACAAAACAAAACAAAAAGAAGCAAAAATAAGGAAAAGAAAGGAAACGGAGAAACGAACG 180 consensus_4726#1 ----------------------------------------------------CCGCGGAC 8 consensus_4726#2 ------------------------------------------------------------ consensus_4726#0 CTTGTGAACCACTCCAGTGTGTTGTTGTGGCGTGTGTGCGCGTACATGCTGCACCCAGTT 240 consensus_4726#1 GCGTGGGCGGACGCGTGGGTTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGG 68 consensus_4726#2 ------------------------------TCCCCGAGGTTAACCC---AACTA-TACGG 26 consensus_4726#0 TGATGTGTAAATGT-TACATTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGG 299 * *** ***** ***** ***** consensus_4726#1 TGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAA-CGAGATAGTGAGTAGAGC 127 consensus_4726#2 TGTGC-TGAGAGTGG---TGTTTTGCNTATCTTAAAAAAA--CGAGATAGTGAGTAGAGC 80 consensus_4726#0 TGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAAACGAGATAGTGAGTAGAGC 359 ***** ********* *** *** ************* ****************** consensus_4726#1 TAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGCCGGTGCAGCAGCAGCAG 187 consensus_4726#2 TAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGC--GTGCAGCAGCAGCAG 138 consensus_4726#0 TAGTAGAAGAGTATACGAAACAGTAACGAAACCCTATTGCCGCCGGTGCAGCAGCAGCAG 419 ******************************* *********** *************** consensus_4726#1 CAGCAACAGCAATTGATGCGGGTGATGCGCGATCTCCCCACACAGCACGGCCAGATGCCG 247 consensus_4726#2 CAGCAACAGCAATTGATGCGGGTNATGCGCGATCTCCCCACACAGCACGGC-AGATGCCG 197 consensus_4726#0 CAGCAACAGCAATTGATGCGGGTGATGCGCGATCGGTCTTCATCTCGCGTC--GCTGTCG 477 *********************** ********** * ** * ** * * ** ** consensus_4726#1 C-ACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACGGACGAC 306 consensus_4726#2 C-ACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACGGACGAC 256 consensus_4726#0 CTGTTTGTTGGTTGGGTGGACTCGACCCGCACAA--ACGAGGC---GAGAGA-AAGCGTC 531 * * ** *** * * * * ** *** ** ** ** ** * consensus_4726#1 AGGGGGGCGCCGGGGCAG-GGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCTGCTGC 365 consensus_4726#2 AGGGGGGCGCCGGGGCAGTGGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCTGCTGC 316 consensus_4726#0 CAGGGCAAGCAAGTGAGTGAGTG--GGCGATCGTAAGTGTGC-GTGCGCGTGTGTGTGTG 588 *** ** * * *** * *** **** * **** ** consensus_4726#1 AGCTGATGGATCTTGGGGGGATGGGCCCGGGCGGCGGTGGCGGCACGATGCTGGCGGAGG 425 consensus_4726#2 AGCTGATGGATCT--GGGGGATGGGCC-GNGCGGCGGTGGCGGCACGATGCTGGCGGAG- 372 consensus_4726#0 TGTGTGTGTGTGTGTGATGTGTGAATGTGCGTACCAACGGATTTGCTCTGGAGGCAGAA- 647 * ** * * * * ** * * * ** * ** *** ** consensus_4726#1 CGGCCTGTTGAGCCGCGGGCCAG-CTGGTGGGACCCGACCGTGGACGATTGCGTCCCGTG 484 consensus_4726#2 CGGCCTGT-GAGCCGCGGGCCAGGCTGGTGGGACCCGACCGTGGACGATTGCGTCCCGTG 431 consensus_4726#0 AAGCCACTGGATCTGGAGGACC--TTCATCCG--TCAATCAAGCATAAGAGCAGCACAGA 703 *** * ** * * ** * * * * * * * * * * ** * * consensus_4726#1 CCGGGTCTGTGCCGAC-CATCAGGTCGTGCTGCGCCCGTGCCAGGACTACATGAACACGG 543 consensus_4726#2 CCGGGTCTGTGCCGACACATCAGGTCGTGCTGCGCCCGTGCCAGGGA------------- 478 consensus_4726#0 ACAGATCAACAGC-ACACAG-ACGTC---------------------------------- 727 * * ** * ** ** * *** consensus_4726#1 TGTGCGGCACGATGAAGGACCTGACGGCGTCGGCTCATCGCCCGTACCCCCATCTGCCCC 603 consensus_4726#2 ------------------------------------------------------------ consensus_4726#0 ------------------------------------------------------------ consensus_4726#1 GAGGGGAACGGTAACGGGATCGTG 627 consensus_4726#2 ------------------------ consensus_4726#0 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||