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Anopheles gambiae
cluster # 4726 cluster # 4726       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4726#0 length = 727 sequences # 1  
consensus_4726#1 length = 627 sequences # 1  
consensus_4726#2 length = 478 sequences # 1  

consensusID : consensus_4726#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 727
fasta sequence
                              [CCGGAGCAACCAAACCGAACGGATCGAAAACAACAACACCCTCTGCCGGGCGCACGGTCCCGCAGCGTGGAACGCACAACGACAATCGGGTTAAGCAATAGCTCGAAGAAGCAAGAAACAAACAAAACAAAACAAAAAGAAGCAAAAATAAGGAAAAGAAAGGAAACGGAGAAACGAACGCTTGTGAACCACTCCAGTGTGTTGTTGTGGCGTGTGTGCGCGTACATGCTGCACCCAGTTTGATGTGTAAATGTTACATTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGGTGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAAACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAACCCTATTGCCGCCGGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTGATGCGCGATCGGTCTTCATCTCGCGTCGCTGTCGCTGTTTGTTGGTTGGGTGGACTCGACCCGCACAAACGAGGCGAGAGAAAGCGTCCAGGGCAAGCAAGTGAGTGAGTGGGCGATCGTAAGTGTGCGTGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGTGAATGTGCGTACCAACGGATTTGCTCTGGAGGCAGAAAAGCCACTGGATCTGGAGGACCTTCATCCGTCAATCAAGCATAAGAGCAGCACAGAACAGATCAACAGCACACAGACGTC]

[+] EMBL BM637289             [CCGGAGCAACCAAACCGAACGGATCGAAAACAACAACACCCTCTGCCGGGCGCACGGTCCCGCAGCGTGGAACGCACAACGACAATCGGGTTAAGCAATAGCTCGAAGAAGCAAGAAACAAACAAAACAAAACAAAAAGAAGCAAAAATAAGGAAAAGAAAGGAAACGGAGAAACGAACGCTTGTGAACCACTCCAGTGTGTTGTTGTGGCGTGTGTGCGCGTACATGCTGCACCCAGTTTGATGTGTAAATGTTACATTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGGTGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAAACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAACCCTATTGCCGCCGGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTGATGCGCGATCGGTCTTCATCTCGCGTCGCTGTCGCTGTTTGTTGGTTGGGTGGACTCGACCCGCACAAACGAGGCGAGAGAAAGCGTCCAGGGCAAGCAAGTGAGTGAGTGGGCGATCGTAAGTGTGCGTGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGTGAATGTGCGTACCAACGGATTTGCTCTGGAGGCAGAAAAGCCACTGGATCTGGAGGACCTTCATCCGTCAATCAAGCATAAGAGCAGCACAGAACAGATCAACAGCACACAGACGTC]


>consensus_4726#0 CCGGAGCAACCAAACCGAACGGATCGAAAACAACAACACCCTCTGCCGGGCGCACGGTCC CGCAGCGTGGAACGCACAACGACAATCGGGTTAAGCAATAGCTCGAAGAAGCAAGAAACA AACAAAACAAAACAAAAAGAAGCAAAAATAAGGAAAAGAAAGGAAACGGAGAAACGAACG CTTGTGAACCACTCCAGTGTGTTGTTGTGGCGTGTGTGCGCGTACATGCTGCACCCAGTT TGATGTGTAAATGTTACATTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGGT GTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAAACGAGATAGTGAGTAGAGCT AGTAGAAGAGTATACGAAACAGTAACGAAACCCTATTGCCGCCGGTGCAGCAGCAGCAGC AGCAACAGCAATTGATGCGGGTGATGCGCGATCGGTCTTCATCTCGCGTCGCTGTCGCTG TTTGTTGGTTGGGTGGACTCGACCCGCACAAACGAGGCGAGAGAAAGCGTCCAGGGCAAG CAAGTGAGTGAGTGGGCGATCGTAAGTGTGCGTGCGCGTGTGTGTGTGTGTGTGTGTGTG TGTGATGTGTGAATGTGCGTACCAACGGATTTGCTCTGGAGGCAGAAAAGCCACTGGATC TGGAGGACCTTCATCCGTCAATCAAGCATAAGAGCAGCACAGAACAGATCAACAGCACAC AGACGTC



consensusID : consensus_4726#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGTTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGGTGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGCCGGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTGATGCGCGATCTCCCCACACAGCACGGCCAGATGCCGCACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACGGACGACAGGGGGGCGCCGGGGCAGGGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCTGCTGCAGCTGATGGATCTTGGGGGGATGGGCCCGGGCGGCGGTGGCGGCACGATGCTGGCGGAGGCGGCCTGTTGAGCCGCGGGCCAGCTGGTGGGACCCGACCGTGGACGATTGCGTCCCGTGCCGGGTCTGTGCCGACCATCAGGTCGTGCTGCGCCCGTGCCAGGACTACATGAACACGGTGTGCGGCACGATGAAGGACCTGACGGCGTCGGCTCATCGCCCGTACCCCCATCTGCCCCGAGGGGAACGGTAACGGGATCGTG]

[+] EMBL BM588704             [CCGCGGACGCGTGGGCGGACGCGTGGGTTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGGTGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGCCGGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTGATGCGCGATCTCCCCACACAGCACGGCCAGATGCCGCACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACGGACGACAGGGGGGCGCCGGGGCAGGGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCTGCTGCAGCTGATGGATCTTGGGGGGATGGGCCCGGGCGGCGGTGGCGGCACGATGCTGGCGGAGGCGGCCTGTTGAGCCGCGGGCCAGCTGGTGGGACCCGACCGTGGACGATTGCGTCCCGTGCCGGGTCTGTGCCGACCATCAGGTCGTGCTGCGCCCGTGCCAGGACTACATGAACACGGTGTGCGGCACGATGAAGGACCTGACGGCGTCGGCTCATCGCCCGTACCCCCATCTGCCCCGAGGGGAACGGTAACGGGATCGTG]


>consensus_4726#1 CCGCGGACGCGTGGGCGGACGCGTGGGTTTGTTCTGCGGCGGTGAGCAAAACCCCCAAAC TACTACGGTGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAACGAGATAGTGA GTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGCCGGTGCAGCA GCAGCAGCAGCAACAGCAATTGATGCGGGTGATGCGCGATCTCCCCACACAGCACGGCCA GATGCCGCACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACG GACGACAGGGGGGCGCCGGGGCAGGGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCT GCTGCAGCTGATGGATCTTGGGGGGATGGGCCCGGGCGGCGGTGGCGGCACGATGCTGGC GGAGGCGGCCTGTTGAGCCGCGGGCCAGCTGGTGGGACCCGACCGTGGACGATTGCGTCC CGTGCCGGGTCTGTGCCGACCATCAGGTCGTGCTGCGCCCGTGCCAGGACTACATGAACA CGGTGTGCGGCACGATGAAGGACCTGACGGCGTCGGCTCATCGCCCGTACCCCCATCTGC CCCGAGGGGAACGGTAACGGGATCGTG



consensusID : consensus_4726#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 478
fasta sequence
                              [TCCCCGAGGTTAACCCAACTATACGGTGTGCTGAGAGTGGTGTTTTGCNTATCTTAAAAAAACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGCGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTNATGCGCGATCTCCCCACACAGCACGGCAGATGCCGCACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACGGACGACAGGGGGGCGCCGGGGCAGTGGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCTGCTGCAGCTGATGGATCTGGGGGATGGGCCGNGCGGCGGTGGCGGCACGATGCTGGCGGAGCGGCCTGTGAGCCGCGGGCCAGGCTGGTGGGACCCGACCGTGGACGATTGCGTCCCGTGCCGGGTCTGTGCCGACACATCAGGTCGTGCTGCGCCCGTGCCAGGGA]

[+] EMBL AL934513             [TCCCCGAGGTTAACCCAACTATACGGTGTGCTGAGAGTGGTGTTTTGCNTATCTTAAAAAAACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGCGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTNATGCGCGATCTCCCCACACAGCACGGCAGATGCCGCACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACGGACGACAGGGGGGCGCCGGGGCAGTGGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCTGCTGCAGCTGATGGATCTGGGGGATGGGCCGNGCGGCGGTGGCGGCACGATGCTGGCGGAGCGGCCTGTGAGCCGCGGGCCAGGCTGGTGGGACCCGACCGTGGACGATTGCGTCCCGTGCCGGGTCTGTGCCGACACATCAGGTCGTGCTGCGCCCGTGCCAGGGA]


>consensus_4726#2 TCCCCGAGGTTAACCCAACTATACGGTGTGCTGAGAGTGGTGTTTTGCNTATCTTAAAAA AACGAGATAGTGAGTAGAGCTAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGC CGCGTGCAGCAGCAGCAGCAGCAACAGCAATTGATGCGGGTNATGCGCGATCTCCCCACA CAGCACGGCAGATGCCGCACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCC CGGACGGACGGACGACAGGGGGGCGCCGGGGCAGTGGTGCCGACGACGACGCTGGTGCTG CTCGCGATCCTGCTGCAGCTGATGGATCTGGGGGATGGGCCGNGCGGCGGTGGCGGCACG ATGCTGGCGGAGCGGCCTGTGAGCCGCGGGCCAGGCTGGTGGGACCCGACCGTGGACGAT TGCGTCCCGTGCCGGGTCTGTGCCGACACATCAGGTCGTGCTGCGCCCGTGCCAGGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4726#1      ------------------------------------------------------------
consensus_4726#2      ------------------------------------------------------------
consensus_4726#0      CCGGAGCAACCAAACCGAACGGATCGAAAACAACAACACCCTCTGCCGGGCGCACGGTCC 60
                                                                                  

consensus_4726#1      ------------------------------------------------------------
consensus_4726#2      ------------------------------------------------------------
consensus_4726#0      CGCAGCGTGGAACGCACAACGACAATCGGGTTAAGCAATAGCTCGAAGAAGCAAGAAACA 120
                                                                                  

consensus_4726#1      ------------------------------------------------------------
consensus_4726#2      ------------------------------------------------------------
consensus_4726#0      AACAAAACAAAACAAAAAGAAGCAAAAATAAGGAAAAGAAAGGAAACGGAGAAACGAACG 180
                                                                                  

consensus_4726#1      ----------------------------------------------------CCGCGGAC 8
consensus_4726#2      ------------------------------------------------------------
consensus_4726#0      CTTGTGAACCACTCCAGTGTGTTGTTGTGGCGTGTGTGCGCGTACATGCTGCACCCAGTT 240
                                                                                  

consensus_4726#1      GCGTGGGCGGACGCGTGGGTTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGG 68
consensus_4726#2      ------------------------------TCCCCGAGGTTAACCC---AACTA-TACGG 26
consensus_4726#0      TGATGTGTAAATGT-TACATTTGTTCTGCGGCGGTGAGCAAAACCCCCAAACTACTACGG 299
                                                     *   ***   *****   ***** *****

consensus_4726#1      TGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAA-CGAGATAGTGAGTAGAGC 127
consensus_4726#2      TGTGC-TGAGAGTGG---TGTTTTGCNTATCTTAAAAAAA--CGAGATAGTGAGTAGAGC 80
consensus_4726#0      TGTGCCTGAGAGTGGGTGTGTAGTGCATATCTTAAAAAAAAACGAGATAGTGAGTAGAGC 359
                      ***** *********   ***  *** *************  ******************

consensus_4726#1      TAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGCCGGTGCAGCAGCAGCAG 187
consensus_4726#2      TAGTAGAAGAGTATACGAAACAGTAACGAAATCCTATTGCCGC--GTGCAGCAGCAGCAG 138
consensus_4726#0      TAGTAGAAGAGTATACGAAACAGTAACGAAACCCTATTGCCGCCGGTGCAGCAGCAGCAG 419
                      ******************************* ***********  ***************

consensus_4726#1      CAGCAACAGCAATTGATGCGGGTGATGCGCGATCTCCCCACACAGCACGGCCAGATGCCG 247
consensus_4726#2      CAGCAACAGCAATTGATGCGGGTNATGCGCGATCTCCCCACACAGCACGGC-AGATGCCG 197
consensus_4726#0      CAGCAACAGCAATTGATGCGGGTGATGCGCGATCGGTCTTCATCTCGCGTC--GCTGTCG 477
                      *********************** **********   *  **   * ** *  * ** **

consensus_4726#1      C-ACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACGGACGAC 306
consensus_4726#2      C-ACGGGACGGGTGGACTGTCACAGCTGGCGGGGCGTCGACGCCCGGACGGACGGACGAC 256
consensus_4726#0      CTGTTTGTTGGTTGGGTGGACTCGACCCGCACAA--ACGAGGC---GAGAGA-AAGCGTC 531
                      *     *  ** ***   * * *  *  **       *** **   **  **    ** *

consensus_4726#1      AGGGGGGCGCCGGGGCAG-GGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCTGCTGC 365
consensus_4726#2      AGGGGGGCGCCGGGGCAGTGGTGCCGACGACGACGCTGGTGCTGCTCGCGATCCTGCTGC 316
consensus_4726#0      CAGGGCAAGCAAGTGAGTGAGTG--GGCGATCGTAAGTGTGC-GTGCGCGTGTGTGTGTG 588
                        ***   **  * *     ***  * ***        **** *  ****    **    

consensus_4726#1      AGCTGATGGATCTTGGGGGGATGGGCCCGGGCGGCGGTGGCGGCACGATGCTGGCGGAGG 425
consensus_4726#2      AGCTGATGGATCT--GGGGGATGGGCC-GNGCGGCGGTGGCGGCACGATGCTGGCGGAG- 372
consensus_4726#0      TGTGTGTGTGTGTGTGATGTGTGAATGTGCGTACCAACGGATTTGCTCTGGAGGCAGAA- 647
                       *    **  * *  *  *  **     * *   *   **     *  **  *** **  

consensus_4726#1      CGGCCTGTTGAGCCGCGGGCCAG-CTGGTGGGACCCGACCGTGGACGATTGCGTCCCGTG 484
consensus_4726#2      CGGCCTGT-GAGCCGCGGGCCAGGCTGGTGGGACCCGACCGTGGACGATTGCGTCCCGTG 431
consensus_4726#0      AAGCCACTGGATCTGGAGGACC--TTCATCCG--TCAATCAAGCATAAGAGCAGCACAGA 703
                        ***  * ** * *  ** *    *  *  *   * * *  * *  *  **  * *   

consensus_4726#1      CCGGGTCTGTGCCGAC-CATCAGGTCGTGCTGCGCCCGTGCCAGGACTACATGAACACGG 543
consensus_4726#2      CCGGGTCTGTGCCGACACATCAGGTCGTGCTGCGCCCGTGCCAGGGA------------- 478
consensus_4726#0      ACAGATCAACAGC-ACACAG-ACGTC---------------------------------- 727
                       * * **     * ** **  * ***                                  

consensus_4726#1      TGTGCGGCACGATGAAGGACCTGACGGCGTCGGCTCATCGCCCGTACCCCCATCTGCCCC 603
consensus_4726#2      ------------------------------------------------------------
consensus_4726#0      ------------------------------------------------------------
                                                                                  

consensus_4726#1      GAGGGGAACGGTAACGGGATCGTG 627
consensus_4726#2      ------------------------
consensus_4726#0      ------------------------
                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)