These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4732#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence [TTCGTGGACACGCTGAGCGACACGTCTCAGCTGAAGGGTGTCGAGTGCTTTACCTTCACCTACAAGGCGCAGTGGCCGGTGTCGATCGTGCTGAACCTGTGGACCATCTCGAAGTACCAGATGATCTTCCGGCAGCTCTTCTACCTGAAGTACGTCGAGCGCATCCTTTGCCGGGTGTGGATCGCCAACAACGAGACGCGCCAGTTTGCGCCGAACCCGGCCAAGCTGTACCGGTCCGCGTTTACCCTGCGCCAGAAGATGCTGATCGCCATCCAGAGCTTCGAGTCGTACATGATGATCGAGGTGATCGAACCGAACTGGCACATTTTTTACCAAAACATGAAACAGGTCAAAAACATTGATGATGTGTTGAACTATCATCAGGACTTTCTGGATCAATGTTTGAAGAATTGCATGCTTACCGAGCCCGATTTGCTTAAACCGATCATCAATCTATGCAATATATGCATCAAATTTTGTGACTTTCTAGCGACCGCAACTACCATGGCACCGACGGAAACGTTCTCGGAGCGGGTGGAACAATTTCGCCACGATTTTACCGACCAGCTCATGACGCTGCTGCGCAAGATTGCCGACGTTGCGACGTTAAGCACCTCAGAACGTTTTATCAACCTCATTTACCGAATCAACTTCAACTCGTACTACAGTGAGACGAACGAAAACTAGAGGAAAGGTAACCCACCATCTGTGAGCAAAAAGGAAGGAGGAAAAAAAAGTACAACTCTTAAAAAAAAGCATCCCCGCTTGCCAAACTCTGT] [+] EMBL BX612710 [TTCGTGGACACGCTGAGCGACACGTCTCAGCTGAAGGGTGTCGAGTGCTTTACCTTCACCTACAAGGCGCAGTGGCCGGTGTCGATCGTGCTGAACCTGTGGACCATCTCGAAGTACCAGATGATCTTCCGGCAGCTCTTCTACCTGAAGTACGTCGAGCGCATCCTTTGCCGGGTGTGGATCGCCAACAACGAGACGCGCCAGTTTGCGCCGAACCCGGCCAAGCTGTACCGGTCCGCGTTTACCCTGCGCCAGAAGATGCTGATCGCCATCCAGAGCTTCGAGTCGTACATGATGATCGAGGTGATCGAACCGAACTGGCACATTTTTTACCAAAACATGAAACAGGTCAAAAACATTGATGATGTGTTGAACTATCATCAGGACTTTCTGGATCAATGTTTGAAGAATTGCATGCTTACCGAGCCCGATTTGCTTAAACCGATCATCAATCTATGCAATATATGCATCAAATTTTGTGACTTTCTAGCGACCGCAACTACCATGGCACCGACGGAAACGTTCTCGGAGCGGGTGGAACAATTTCGCCACGATTTTACCGACCAGCTCATGACGCTGCTGCGCAAGATTGCCGACGTTGCGACGTTAAGCACCTCAGAACGTTTTATCAACCTCATTTACCGAATCAACTTCAACTCGTACTACAGTGAGACGAACGAAAACTAGAGGAAAGGTAACCCACCATCTGTGAGCAAAAAGGAAGGAGGAAAAAAAAGTACAACTCTTAAAAAAAAGCATCCCCGCTTGCCAAACTCTGT] consensusID : consensus_4732#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCTGGTCGAGTCGGCTGCGGCGCCGTTCATGGAGATGCTGGAGCTGTGGATCTACCGGGGCGTCATTAACGATCCGCAGCAGGAGTTTTTCATCGACCACAGCTCGATGGAGCTGACCGAGAACGAGCTGGTCGACTACTGGGAGAAGCAGTACACCATCCGGAACGAGAAGGTGCCGTGCTTTTTGGCCAAACATGCGGACATCATACTGCGCACCGGCAAGTACCTGAACGTGGTGCGCGTGTGCGGCGGGGCCGAGTTTCAACCGGGCAATGCGAACGGCGGCGGCGGCGGCGCAACGACGACTGATCTGCTCAACGCGTCGAGCGCGACGGCCCGGACCACGACCGCGGTCAAACGGCTGCAGTACGCACACTTCGACCAGTCGTACCTGGACGAGATTGAGGAGGCGTACAATTTCGCCTCCTCCTCGCTGCTGAATCTCATCATGAACAAGTACGATCTGATGGGCCGGCTGCTGTCCGTCAAGCGCTACTTTCTGCTGCAGCAGGGCGACTTCATTACCGAGTTTATGGACGCGGTCGAGGAGGATCTGCGCAAGAGCGTGGACACGCTGCACCCGATCCGGCTGGCCAACCTGCTGGACGTGACGCTGGGGCTG] [+] EMBL BM591164 [CCGCGGACGCGTGGGCGGACGCGTGGGCTGGTCGAGTCGGCTGCGGCGCCGTTCATGGAGATGCTGGAGCTGTGGATCTACCGGGGCGTCATTAACGATCCGCAGCAGGAGTTTTTCATCGACCACAGCTCGATGGAGCTGACCGAGAACGAGCTGGTCGACTACTGGGAGAAGCAGTACACCATCCGGAACGAGAAGGTGCCGTGCTTTTTGGCCAAACATGCGGACATCATACTGCGCACCGGCAAGTACCTGAACGTGGTGCGCGTGTGCGGCGGGGCCGAGTTTCAACCGGGCAATGCGAACGGCGGCGGCGGCGGCGCAACGACGACTGATCTGCTCAACGCGTCGAGCGCGACGGCCCGGACCACGACCGCGGTCAAACGGCTGCAGTACGCACACTTCGACCAGTCGTACCTGGACGAGATTGAGGAGGCGTACAATTTCGCCTCCTCCTCGCTGCTGAATCTCATCATGAACAAGTACGATCTGATGGGCCGGCTGCTGTCCGTCAAGCGCTACTTTCTGCTGCAGCAGGGCGACTTCATTACCGAGTTTATGGACGCGGTCGAGGAGGATCTGCGCAAGAGCGTGGACACGCTGCACCCGATCCGGCTGGCCAACCTGCTGGACGTGACGCTGGGGCTG] consensusID : consensus_4732#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [CCGCCCACGCGTCCGGGGAGAAGCAGTACACCATCCGGAACGAGAAGGTGCCGTGCTTTTTGGCCAAACACGCGGACATCATACTGCGCACCGGCAAGTACCTGAACGTGGTGCGCGTGTGCGGCGGGGCTGAGTTTCAACCGGGCAATGCGAACGGCGGCGGCGGCTTCGGCGCCACCACGACGACCGATCTGCTCAACGCGTCGAGCGCGACGGCCCGGACCACGACCGCGGTCAAACGGCTGCAGTACGCACACTTCGACCAGTCGTACCTGGACGAGATTGAGGAGGCGTACAATTTCGCCTCCTCCTCGCTGCTGAATCTCATCATGAACAAGTACGATCTGATGGGCCGGCTGCTGTCCGTCAAGCGCTACTTTCTGCTGCAGCAGGGCGACTTCATTACCGAGTTTATGGACGCGGTCGAGGAGGATCTGCGCAAGAGCGTGGACACGCTGCACCCGATCCGGCTGGCCAACCTGCTGGACGTGACGCTGGGGCTGTCGTCCGCCAAGTACGACGAGTATCACGACGATCTGAAAACGATGCTTCTACCGTACGGCATCGTGACGCAGATCTCGAAAATCGTCAACAACGAGGACGCGTTCGTGGACACGCTGAGCGACACGTCCCAGC] [+] EMBL BM614901 [CCGCCCACGCGTCCGGGGAGAAGCAGTACACCATCCGGAACGAGAAGGTGCCGTGCTTTTTGGCCAAACACGCGGACATCATACTGCGCACCGGCAAGTACCTGAACGTGGTGCGCGTGTGCGGCGGGGCTGAGTTTCAACCGGGCAATGCGAACGGCGGCGGCGGCTTCGGCGCCACCACGACGACCGATCTGCTCAACGCGTCGAGCGCGACGGCCCGGACCACGACCGCGGTCAAACGGCTGCAGTACGCACACTTCGACCAGTCGTACCTGGACGAGATTGAGGAGGCGTACAATTTCGCCTCCTCCTCGCTGCTGAATCTCATCATGAACAAGTACGATCTGATGGGCCGGCTGCTGTCCGTCAAGCGCTACTTTCTGCTGCAGCAGGGCGACTTCATTACCGAGTTTATGGACGCGGTCGAGGAGGATCTGCGCAAGAGCGTGGACACGCTGCACCCGATCCGGCTGGCCAACCTGCTGGACGTGACGCTGGGGCTGTCGTCCGCCAAGTACGACGAGTATCACGACGATCTGAAAACGATGCTTCTACCGTACGGCATCGTGACGCAGATCTCGAAAATCGTCAACAACGAGGACGCGTTCGTGGACACGCTGAGCGACACGTCCCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4732#1 CCGCGGACGCGTGGGCGGACGCGTGGGCTGGTCGAGTCGGCTGCGGCGCCGTTCATGGAG 60 consensus_4732#2 ------------------------------------------------------------ consensus_4732#0 ---------------------------------TTCGTGGACACGCTGAGCGACACGTCT 27 consensus_4732#1 ATGCTGGAGCTGTGGATCTACCGGGGCGTCATTAACGATCCGCAGCAGGAGTTTTTCATC 120 consensus_4732#2 ------------------------------------------------------------ consensus_4732#0 CAGCTGAAGGGTGTCGAGTGCTTTACCTTCACCTACAAGGCGCAGTGGCCGGTGTCGATC 87 consensus_4732#1 GACCACAGCTCGATGGAGCTGACCGAGAACGAGCTGGTCGACTACTGGGAGAAGCAGTAC 180 consensus_4732#2 -----------------------------CCGCCCACGCGTCCG--GGGAGAAGCAGTAC 29 consensus_4732#0 GTGCTGAACCTGTGGACCATCTCGAAGTACCAGATGATCTTCCG------GCAGC--TCT 139 * * * * *** * consensus_4732#1 ACCATCCGGAACGAGAAGGTGCCGTGCTTTTTGGCCAAACATGCGGACATCATACTGCGC 240 consensus_4732#2 ACCATCCGGAACGAGAAGGTGCCGTGCTTTTTGGCCAAACACGCGGACATCATACTGCGC 89 consensus_4732#0 TCTACCTGAAGTACGTCGAGCGCATCCTTTGCCGGGTGTGGATCGCCAACAACGAGACGC 199 * * * * * * * * * **** * ** * * *** consensus_4732#1 ACCGGCAAGTACCTGAACGTGGTGCGCGTGTGCGG--CGGGGCCGAGTTTCAACCGGGCA 298 consensus_4732#2 ACCGGCAAGTACCTGAACGTGGTGCGCGTGTGCGG--CGGGGCTGAGTTTCAACCGGGCA 147 consensus_4732#0 GCCAGTTTGCGCC-GAACCCGGCCAAGCTGTACCGGTCCGCGTTTACCCTGCGCCAGAAG 258 ** * * ** **** ** *** * * * * * * * ** * consensus_4732#1 ATGC-GAACGGCGGCGGCGGC------GGCGCAACGACGACTGATCTGCTCAACGCG--- 348 consensus_4732#2 ATGC-GAACGGCGGCGGCGGCTTCGGCGCCACCACGACGACCGATCTGCTCAACGCG--- 203 consensus_4732#0 ATGCTGATCGCCATCCAGAGCTTCGAGTCGTACATGATGATCGAGGTGATCGAACCGAAC 318 **** ** ** * * ** * ** ** ** ** ** * ** consensus_4732#1 TCGAGCGCGACGGCCCGGACCACGACCGCGGTCAAACGGCTGCAGTACGCAC---ACTTC 405 consensus_4732#2 TCGAGCGCGACGGCCCGGACCACGACCGCGGTCAAACGGCTGCAGTACGCAC---ACTTC 260 consensus_4732#0 TGGCACATTTTTTACCAAAACATGAAACAGGTCAAAAACATTGATGATGTGTTGAACTAT 378 * * * ** * ** ** ******* * * * * *** consensus_4732#1 GACCAGTCGTACCTGGACGAGATTGAGGAGGCGTACAATTTCGCCTCCTCCTCGCTGCTG 465 consensus_4732#2 GACCAGTCGTACCTGGACGAGATTGAGGAGGCGTACAATTTCGCCTCCTCCTCGCTGCTG 320 consensus_4732#0 CATCAGGACTTTCTGGATCAATGTTTGAAGAATTGCATGCTTACCGAGCCCGATTTGCTT 438 * *** * ***** * * * ** * ** * ** ** **** consensus_4732#1 AATCTCATCATGAACAAGTACGATCTGATGGGCCGGCTGCTGT--CCGTCAAGCGCTACT 523 consensus_4732#2 AATCTCATCATGAACAAGTACGATCTGATGGGCCGGCTGCTGT--CCGTCAAGCGCTACT 378 consensus_4732#0 AAACCGATCATCAATCTATGCAATAT-ATGCATCAAATTTTGTGACTTTCTAGCGACCGC 497 ** * ***** ** * * ** * *** * * *** * ** **** consensus_4732#1 TTCTGCTGCAGCAG-GGCGACTTCATTACCG-AGTTTATGGACGCGGTCGAGGAGGATCT 581 consensus_4732#2 TTCTGCTGCAGCAG-GGCGACTTCATTACCG-AGTTTATGGACGCGGTCGAGGAGGATCT 436 consensus_4732#0 AACTACCATGGCACCGACGGAAACGTTCTCGGAGCGGGTGGAACAATTTCGCCACGATTT 557 ** * *** * ** * ** ** ** **** * * *** * consensus_4732#1 GCGCAAGAGCGTGGACACGCTGC-ACCCGATCCGGCTGGCCAACCTGCTGGACGTGACGC 640 consensus_4732#2 GCGCAAGAGCGTGGACACGCTGC-ACCCGATCCGGCTGGCCAACCTGCTGGACGTGACGC 495 consensus_4732#0 TACCGACCAGCTCATGACGCTGCTGCGCAAGATTGCCGACGTTGCGACGTTAAGCACCTC 617 * * * ******* * * * ** * * * * * * * * consensus_4732#1 TGGGGCTG---------------------------------------------------- 648 consensus_4732#2 TGGGGCTGTCGTCCGCCAAGTACGACGAGTATCACGACGATCTGAAAACGATGCTTCTAC 555 consensus_4732#0 AGAACGTTTTATCAACCTCATTTACCGAATCAACTTCAACTCGTACTACAGTGAGACGAA 677 * * consensus_4732#1 ------------------------------------------------------------ consensus_4732#2 CGTACGGCATCGTGACGCAGATCTCGAAAATCGTCAACAACGAGGACGCGTTCGTGGACA 615 consensus_4732#0 CGAAAACTAGAG-GAAAGGTAACCCACCATCTGTGAGCAAAAAGGAAGGAGGAAAAAAAA 736 consensus_4732#1 ------------------------------------------- consensus_4732#2 CGCTGAGCGACACGTCCCAGC---------------------- 636 consensus_4732#0 GTACAACTCTTAAAAAAAAGCATCCCCGCTTGCCAAACTCTGT 779 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||