These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 828 fasta sequence [GCCAGATCGCCACGAGGTCTAGTATCAGTATGGTCGGAGAAACGTGAATTACGTTTGGAATCTGAGAAATTGTGCCTTTCGCAAGATGATTTAAGCATAATTTGGAACAATTACTGGTCGTTTGAAAGCAATAAAGAAGCACAAGCCGAAAATTTGTTCCCAGTTGCTAAATTTACGGCCCAGCTACGACAATTCACAACAAATCGGGCCGGATATCTTGGAGACCATTTCATACTCGAATTGTCAACTGAACAATGCGACACTCGTTTACCATTGTTTTTAAAAGCTGCACCATCGTCTATACCGGCCCTTACTCGTTACCTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTGTATGGCGAACTGTTCCCGAAGCTCCGAATCTATTCGCGCTTTGCACCGAATTGTTACTTTTCCGATAGAGGCAAGGGTACTGTGTTGGTGCTGGGAAAACTTAAAAACACAAGGATTCGAAACTATTCCCAGTGACGCTACAAGAACGTTTGATGAAGAGCATATAAAGTGCGCACTTGACTGCCTTGGCAAGATTCCATTCGGCAACAATTCTGTGGAGGAAAGAGACGGGAACAAGTGTACCGATTGCAAGTTTCCGGGGGGTTTGGTTTGGAAAGAAAACATGCTTTGGGATTTAACGAAGGGGATAATTAATTCCCAAGAAATTAGAGGGAACTCCAACCATTTGCCGATCCGATATTTTGGCTCGACATTTTGTGCGAAATCATTCGAAGATGGACACCCCACGGGTTGGATACCGAATCTGCAAAAANTACCCTCCNTGTAATGCAGATCTACAAGCTNTTA] [+] EMBL BX466606 [GCCAGATCGCCACGAGGTCTAGTATCAGTATGGTCGGAGAAACGTGAATTACGTTTGGAATCTGAGAAATTGTGCCTTTCGCAAGATGATTTAAGCATAATTTGGAACAATTACTGGTCGTTTGAAAGCAATAAAGAAGCACAAGCCGAAAATTTGTTCCCAGTTGCTAAATTTACGGCCCAGCTACGACAATTCACAACAAATCGGGCCGGATATCTTGGAGACCATTTCATACTCGAATTGTCAACTGAACAATGCGACACTCGTTTACCATTGTTTTTAAAAGCTGCACCATCGTCTATACCGGCCCTTACTCGTTACCTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTGTATGGCGAACTGTTCCCGAAGCTCCGAATCTATTCGCGCTTTGCACCGAATTGTTACTTTTCCGATAGAGGCAAGGGTACTGTGTTGGTGCTGGGAAAACTTAAAAACACAAGGATTCGAAACTATTCCCAGTGACGCTACAAGAACGTTTGATGAAGAGCATATAAAGTGCGCACTTGACTGCCTTGGCAAGATTCCATTCGGCAACAATTCTGTGGAGGAAAGAGACGGGAACAAGTGTACCGATTGCAAGTTTCCGGGGGGTTTGGTTTGGAAAGAAAACATGCTTTGGGATTTAACGAAGGGGATAATTAATTCCCAAGAAATTAGAGGGAACTCCAACCATTTGCCGATCCGATATTTTGGCTCGACATTTTGTGCGAAATCATTCGAAGATGGACACCCCACGGGTTGGATACCGAATCTGCAAAAANTACCCTCCNTGTAATGCAGATCTACAAGCTNTTA] consensusID : consensus_4761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [CCGGGAGAAAGTGAATTACGTCTGGAATCTGAGAAATTGTGCTTTTCGCAAGATGATTTAAACGTAATTTGGAACAATTACTGGTCGTTTGAAAGCAACAAAGAAGCACAAGCCGAAAATGTGTTCCCAGCTGCTAAAGTTACAGCCCAGCTACGACAATTCACAACAAATCGGGCCGGATATCTTGGAGACCATTTCATACTCGAATTGTCAACCGAACAATGCGACACTCGTTTAGCATTGTTTTTAAAAGCTGCCCCATCGTCTATACCGGCCCTTACTCGTTACCTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTGTATGGCGAACTGTTCCCGAAGCTCAGAATCTATTCGCGCTTTGCACCGAATTGTTACTTTTCTGATACAGGCAAGGGGAATGTGTTGGTGCTGGAAAACTTAAAAACACAAGGATTCGAAACTATTCCCAGTGACGCTACAAGAACGTTTGATGAAGAGCATATAAAGTGCGCACTTGCTGCCTTGGCAAGATTCCATTCGGCAACTATTCTGTTGGAAAAAGAGACGGGAACAAGTGTACCGCTGCAATTTCCGGGGTTGTTGGAAGAAAATGCTTGGATTAGAAGGGATAATAATCCAAGAATAGAGGAACTCAACGTTGCCGTCGATATTTTGCTCGCATTTGTGCGAATCATCGA] [+] EMBL BM627282 [CCGGGAGAAAGTGAATTACGTCTGGAATCTGAGAAATTGTGCTTTTCGCAAGATGATTTAAACGTAATTTGGAACAATTACTGGTCGTTTGAAAGCAACAAAGAAGCACAAGCCGAAAATGTGTTCCCAGCTGCTAAAGTTACAGCCCAGCTACGACAATTCACAACAAATCGGGCCGGATATCTTGGAGACCATTTCATACTCGAATTGTCAACCGAACAATGCGACACTCGTTTAGCATTGTTTTTAAAAGCTGCCCCATCGTCTATACCGGCCCTTACTCGTTACCTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTGTATGGCGAACTGTTCCCGAAGCTCAGAATCTATTCGCGCTTTGCACCGAATTGTTACTTTTCTGATACAGGCAAGGGGAATGTGTTGGTGCTGGAAAACTTAAAAACACAAGGATTCGAAACTATTCCCAGTGACGCTACAAGAACGTTTGATGAAGAGCATATAAAGTGCGCACTTGCTGCCTTGGCAAGATTCCATTCGGCAACTATTCTGTTGGAAAAAGAGACGGGAACAAGTGTACCGCTGCAATTTCCGGGGTTGTTGGAAGAAAATGCTTGGATTAGAAGGGATAATAATCCAAGAATAGAGGAACTCAACGTTGCCGTCGATATTTTGCTCGCATTTGTGCGAATCATCGA] consensusID : consensus_4761#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [AGAATNGCCGAGGTNGGCCTTATCGTTACTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTGTATGGCGAACTGTTCCCGAAGCTCCGAATCTATTCGCGCTTTGCACCGAATTGTTACTTTTCTGATACAGGCAAGGGGAACTGTGTTTGGTGCTGGAAAACTTAAAAACACAAGGATTCGAAACTATTCCCAGTGACGCTACAAGAACGTTTTGACTGAACGAGCATATAAAGTGCGCACTTGCTGCCTTGGCAAGATTCCATTCGGCAACCATTCTGTTTGGAAAAAGAGACGGGAACAAGTGTACCGCTGCAATTTCCGGGGTTGTCTGGAAGAAAATGCTTGGATTAGAAGGGATAATAATCCAAGAATAGAGGAACTCAACATTGCCGTCGATATTTTGCTCGCGTTTTGTGCGAATCATCGAAAATGATAACCCACAGTTGATAACGATACTGCAAAAACTACCCTCGTTGTGATGCAGATCTACGAGCTTGTTAAGCCTTCCAGCAAGTTTAAAAACGTCGCATGCCATGGTGATCTCTGGGCTAGCAATATGAT] [+] EMBL AL931975 [AGAATNGCCGAGGTNGGCCTTATCGTTACTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTGTATGGCGAACTGTTCCCGAAGCTCCGAATCTATTCGCGCTTTGCACCGAATTGTTACTTTTCTGATACAGGCAAGGGGAACTGTGTTTGGTGCTGGAAAACTTAAAAACACAAGGATTCGAAACTATTCCCAGTGACGCTACAAGAACGTTTTGACTGAACGAGCATATAAAGTGCGCACTTGCTGCCTTGGCAAGATTCCATTCGGCAACCATTCTGTTTGGAAAAAGAGACGGGAACAAGTGTACCGCTGCAATTTCCGGGGTTGTCTGGAAGAAAATGCTTGGATTAGAAGGGATAATAATCCAAGAATAGAGGAACTCAACATTGCCGTCGATATTTTGCTCGCGTTTTGTGCGAATCATCGAAAATGATAACCCACAGTTGATAACGATACTGCAAAAACTACCCTCGTTGTGATGCAGATCTACGAGCTTGTTAAGCCTTCCAGCAAGTTTAAAAACGTCGCATGCCATGGTGATCTCTGGGCTAGCAATATGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4761#0 GCCAGATCGCCACGAGGTCTAGTATCAGTATGGTCGGAGAAACGTGAATTACGTTTGGAA 60 consensus_4761#1 ---------------------------------CCGGGAGAAAGTGAATTACGTCTGGAA 27 consensus_4761#2 ------------------------------------------------------------ consensus_4761#0 TCTGAGAAATTGTGCCTTTCGCAAGATGATTTAAGCATAATTTGGAACAATTACTGGTCG 120 consensus_4761#1 TCTGAGAAATTGTGCTTTTCGCAAGATGATTTAAACGTAATTTGGAACAATTACTGGTCG 87 consensus_4761#2 ------------------------------------------------------------ consensus_4761#0 TTTGAAAGCAATAAAGAAGCACAAGCCGAAAATTTGTTCCCAGTTGCTAAATTTACGGCC 180 consensus_4761#1 TTTGAAAGCAACAAAGAAGCACAAGCCGAAAATGTGTTCCCAGCTGCTAAAGTTACAGCC 147 consensus_4761#2 ------------------------------------------------------------ consensus_4761#0 CAGCTACGACAATTCACAACAAATCGGGCCGGATATCTTGGAGACCATTTCATACTCGAA 240 consensus_4761#1 CAGCTACGACAATTCACAACAAATCGGGCCGGATATCTTGGAGACCATTTCATACTCGAA 207 consensus_4761#2 ------------------------------------------------------------ consensus_4761#0 TTGTCAACTGAACAATGCGACACTCGTTTACCATTGTTTTTAAAAGCTGCACCATCGTCT 300 consensus_4761#1 TTGTCAACCGAACAATGCGACACTCGTTTAGCATTGTTTTTAAAAGCTGCCCCATCGTCT 267 consensus_4761#2 --------------------------------------------------AGAATNGCCG 10 ** * * consensus_4761#0 ATACCGGCCCTTACTCGTTACCTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTG 360 consensus_4761#1 ATACCGGCCCTTACTCGTTACCTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTG 327 consensus_4761#2 AGGTNGGCCTT--ATCGTTAC-TGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTG 67 * **** * ******* ************************************** consensus_4761#0 TATGGCGAACTGTTCCCGAAGCTCCGAATCTATTCGCGCTTTGCACCGAATTGTTACTTT 420 consensus_4761#1 TATGGCGAACTGTTCCCGAAGCTCAGAATCTATTCGCGCTTTGCACCGAATTGTTACTTT 387 consensus_4761#2 TATGGCGAACTGTTCCCGAAGCTCCGAATCTATTCGCGCTTTGCACCGAATTGTTACTTT 127 ************************ *********************************** consensus_4761#0 TCCGATAGAGGCAAGGGTAC-TGTGTT-GGTGCTGGGAAAACTTAAAAACACAAGGATTC 478 consensus_4761#1 TCTGATACAGGCAAGGGGAA-TGTGTT-GGTGCTGG-AAAACTTAAAAACACAAGGATTC 444 consensus_4761#2 TCTGATACAGGCAAGGGGAACTGTGTTTGGTGCTGG-AAAACTTAAAAACACAAGGATTC 186 ** **** ********* * ****** ******** *********************** consensus_4761#0 GAAACTATTCCCAGTGACGCTACAAGAACGTTTGA--TGAA-GAGCATATAAAGTGCGCA 535 consensus_4761#1 GAAACTATTCCCAGTGACGCTACAAGAACGTTTGA--TGAA-GAGCATATAAAGTGCGCA 501 consensus_4761#2 GAAACTATTCCCAGTGACGCTACAAGAACGTTTTGACTGAACGAGCATATAAAGTGCGCA 246 ********************************* **** ****************** consensus_4761#0 CTTGACTGCCTTGGCAAGATTCCATTCGGCAACAATTCTGTG-GAGGAAAGAGACGGGAA 594 consensus_4761#1 CTTG-CTGCCTTGGCAAGATTCCATTCGGCAACTATTCTGTT-GGAAAAAGAGACGGGAA 559 consensus_4761#2 CTTG-CTGCCTTGGCAAGATTCCATTCGGCAACCATTCTGTTTGGAAAAAGAGACGGGAA 305 **** **************************** ******* * ************* consensus_4761#0 CAAGTGTACCGATTGCAAGTTTCCGGGGGGTTTGGTTTGGAAAGAAAACATGCTTTGGGA 654 consensus_4761#1 CAAGTGTACCG-CTGCAA-TTTCCGGGG---TTG--TTGGAAGAAAA---TGCTT--GGA 607 consensus_4761#2 CAAGTGTACCG-CTGCAA-TTTCCGGGG---TTG-TCTGGAAGAAAA---TGCTT--GGA 354 *********** ***** ********* *** ***** *** ***** *** consensus_4761#0 TTTAACGAAGGGGATAATTAATTCCCAAGAAATTAGAGGGAACTCCAACCATTTGCCGAT 714 consensus_4761#1 TT----AGAAGGGATAATAA---TCCAAGAA--TAGAGGAA--CTCAACG--TTGCCG-- 652 consensus_4761#2 TT----AGAAGGGATAATAA---TCCAAGAA--TAGAGGAA--CTCAACA--TTGCCG-- 399 ** * ******** * ******* ****** * **** ****** consensus_4761#0 CCGATATTTTGGCTCGACATTTTGTGCGAAATCATTCGAAGATGGACACCCCACGGGTTG 774 consensus_4761#1 TCGATATTTTG-CTCG-CATTT-GTGCGAA-TCAT-CGA--------------------- 686 consensus_4761#2 TCGATATTTTG-CTCG-CGTTTTGTGCGAA-TCAT-CGAAAATGATAACCCACAG---TT 452 ********** **** * *** ******* **** *** consensus_4761#0 GATACCGAATCTGCAAAAANTACCCTCCNTGTAATGCAGATCTACAAGCTNTTA------ 828 consensus_4761#1 ------------------------------------------------------------ consensus_4761#2 GATAACGATACTGCAAAAACTACCCTCGTTGTGATGCAGATCTACGAGCTTGTTAAGCCT 512 consensus_4761#0 -------------------------------------------------------- consensus_4761#1 -------------------------------------------------------- consensus_4761#2 TCCAGCAAGTTTAAAAACGTCGCATGCCATGGTGATCTCTGGGCTAGCAATATGAT 568 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||