These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence [CCGTACAGAATGGGTCGCTTCACCTTACTGGCAGCGCTTTTCGCTGGATTAGTGTGTTTGATCGATCTTTCTCCAGCCTTAGCCCATCCAAGTGCAATTAAACCACCTACCGATGCGTCGCAAATGCCAAACATCCCCAGTCCGGGCGATTTTCCCAGGCCACCCGGAATGCTGCACAATCGGGTATCACGTCAGGCTCCACCTGAAATTCCCGGACAAGATCAATTCCCTCCACCGCCGCCGCCACCGCCCCAGATGCCTCAGATGGTTTGATTCCTTTACCCACGGCAATGTACACGCTTTCTCGAACGCTTCATCTTACGTCCTATCCAACACACACTTTCCCACACTTCCATTTACACCACCATCCTCTTACAGAGATCCCGTCGAAACGCTAGGACATCGATCGAAATGACCAACATTCTGCCGGCACTTGAAACCATATCGTACATTTCGGTGGCACGTGACAAACGAGCCGCCAAGGGCACTGGAGGCAAGCTACCCAGTAAGGCTGGATGAAAAGCAGAAGAGCAAACCTGATTCCTTCAACGATGTTTCTTAGCTGATGAGTTCGCTTTCCCTTTGTTGCCCGTTATCCATAATATATAGGGGGTGTGACGAATAGCATATTCATATGTACTACAATCAAATAAATTACCATGCAAGCAATGAATG] [+] EMBL BM629443 [CCGTACAGAATGGGTCGCTTCACCTTACTGGCAGCGCTTTTCGCTGGATTAGTGTGTTTGATCGATCTTTCTCCAGCCTTAGCCCATCCAAGTGCAATTAAACCACCTACCGATGCGTCGCAAATGCCAAACATCCCCAGTCCGGGCGATTTTCCCAGGCCACCCGGAATGCTGCACAATCGGGTATCACGTCAGGCTCCACCTGAAATTCCCGGACAAGATCAATTCCCTCCACCGCCGCCGCCACCGCCCCAGATGCCTCAGATGGTTTGATTCCTTTACCCACGGCAATGTACACGCTTTCTCGAACGCTTCATCTTACGTCCTATCCAACACACACTTTCCCACACTTCCATTTACACCACCATCCTCTTACAGAGATCCCGTCGAAACGCTAGGACATCGATCGAAATGACCAACATTCTGCCGGCACTTGAAACCATATCGTACATTTCGGTGGCACGTGACAAACGAGCCGCCAAGGGCACTGGAGGCAAGCTACCCAGTAAGGCTGGATGAAAAGCAGAAGAGCAAACCTGATTCCTTCAACGATGTTTCTTAGCTGATGAGTTCGCTTTCCCTTTGTTGCCCGTTATCCATAATATATAGGGGGTGTGACGAATAGCATATTCATATGTACTACAATCAAATAAATTACCATGCAAGCAATGAATG] [+] EMBL BM654867 [ ccgatAGATCCCGTCGAAACGCTAGGACATCGATCGAAATGACCAACATTCTGCCGGCACTTGAAACCATATCGTACATTTCGGTGGCACGTGACAAACGAGCCGCCAAGGGCACTGGAGGCAAGCTACCCAGTAAGGCTGGATGAAAAGCAGAAGAGCAAACCTGATTCCTTCAACGATGTTTCTTAGCTGATGAGTTCGCTTTCCCTTTGTTGCCCGTTATCCATAATATATAGGGGGTGTGACGAATAGCATATTCATATGTACTACAATCAAATAAATTACCATGCAAGC ] consensusID : consensus_4762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [CCGCAACATTATACAGAATGGGTCGCTTCACCTTACTGGCAGCGCTTTTCGCTGGATTAGTGTGTTTGATCGATCTTTCTCCAGCCTTAGCCCATCCAAGTGCAATTAAACCGCCTACCGATGCGTCGCAAATGCCAAACATCCCCAGTCCGGGCGATTTTCCCAGGCCACCCGGAATGCTGCACAATCGGGTATCACGTCAGGCTCCACCTGAAATTCCCGGACAAGATCAATTCCCTCCACCGCCGCCGCCACCGCCCCAGATGCCTCAGATGGTTTGATTCCTTTACCCACGGCAATAGATCCCGTCGAAACGCTAGGACATCGATCGAAATGACCAACATTCTGCCGGCACTTGAAACCATATCGTACATTTCGGTGGCACGTGACAAACGAGCCGCCAAGGGCACTGGAGGCAAGCTACCCAGTAAGGCTGGATGAAAAGCAGAAGAGCAAACCTGATTCCTTCAACGATGTTTCTTAGCTGATGAGTTCGCTTTCCCTTTGTTGCCCGTTATCCATAATATATTAGGGGGTGTGACGAATAGCATATTCATATGTACTAC] [+] EMBL BM576822 [CCGCAACATTATACAGAATGGGTCGCTTCACCTTACTGGCAGCGCTTTTCGCTGGATTAGTGTGTTTGATCGATCTTTCTCCAGCCTTAGCCCATCCAAGTGCAATTAAACCGCCTACCGATGCGTCGCAAATGCCAAACATCCCCAGTCCGGGCGATTTTCCCAGGCCACCCGGAATGCTGCACAATCGGGTATCACGTCAGGCTCCACCTGAAATTCCCGGACAAGATCAATTCCCTCCACCGCCGCCGCCACCGCCCCAGATGCCTCAGATGGTTTGATTCCTTTACCCACGGCAATAGATCCCGTCGAAACGCTAGGACATCGATCGAAATGACCAACATTCTGCCGGCACTTGAAACCATATCGTACATTTCGGTGGCACGTGACAAACGAGCCGCCAAGGGCACTGGAGGCAAGCTACCCAGTAAGGCTGGATGAAAAGCAGAAGAGCAAACCTGATTCCTTCAACGATGTTTCTTAGCTGATGAGTTCGCTTTCCCTTTGTTGCCCGTTATCCATAATATATTAGGGGGTGTGACGAATAGCATATTCATATGTACTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4762#0 --------CCGTACAGAATGGGTCGCTTCACCTTACTGGCAGCGCTTTTCGCTGGATTAG 52 consensus_4762#1 CCGCAACATTATACAGAATGGGTCGCTTCACCTTACTGGCAGCGCTTTTCGCTGGATTAG 60 ************************************************* consensus_4762#0 TGTGTTTGATCGATCTTTCTCCAGCCTTAGCCCATCCAAGTGCAATTAAACCACCTACCG 112 consensus_4762#1 TGTGTTTGATCGATCTTTCTCCAGCCTTAGCCCATCCAAGTGCAATTAAACCGCCTACCG 120 **************************************************** ******* consensus_4762#0 ATGCGTCGCAAATGCCAAACATCCCCAGTCCGGGCGATTTTCCCAGGCCACCCGGAATGC 172 consensus_4762#1 ATGCGTCGCAAATGCCAAACATCCCCAGTCCGGGCGATTTTCCCAGGCCACCCGGAATGC 180 ************************************************************ consensus_4762#0 TGCACAATCGGGTATCACGTCAGGCTCCACCTGAAATTCCCGGACAAGATCAATTCCCTC 232 consensus_4762#1 TGCACAATCGGGTATCACGTCAGGCTCCACCTGAAATTCCCGGACAAGATCAATTCCCTC 240 ************************************************************ consensus_4762#0 CACCGCCGCCGCCACCGCCCCAGATGCCTCAGATGGTTTGATTCCTTTACCCACGGCAAT 292 consensus_4762#1 CACCGCCGCCGCCACCGCCCCAGATGCCTCAGATGGTTTGATTCCTTTACCCACGGCAAT 300 ************************************************************ consensus_4762#0 GTACACGCTTTCTCGAACGCTTCATCTTACGTCCTATCCAACACACACTTTCCCACACTT 352 consensus_4762#1 ------------------------------------------------------------ consensus_4762#0 CCATTTACACCACCATCCTCTTACAGAGATCCCGTCGAAACGCTAGGACATCGATCGAAA 412 consensus_4762#1 --------------------------AGATCCCGTCGAAACGCTAGGACATCGATCGAAA 334 ********************************** consensus_4762#0 TGACCAACATTCTGCCGGCACTTGAAACCATATCGTACATTTCGGTGGCACGTGACAAAC 472 consensus_4762#1 TGACCAACATTCTGCCGGCACTTGAAACCATATCGTACATTTCGGTGGCACGTGACAAAC 394 ************************************************************ consensus_4762#0 GAGCCGCCAAGGGCACTGGAGGCAAGCTACCCAGTAAGGCTGGATGAAAAGCAGAAGAGC 532 consensus_4762#1 GAGCCGCCAAGGGCACTGGAGGCAAGCTACCCAGTAAGGCTGGATGAAAAGCAGAAGAGC 454 ************************************************************ consensus_4762#0 AAACCTGATTCCTTCAACGATGTTTCTTAGCTGATGAGTTCGCTTTCCCTTTGTTGCCCG 592 consensus_4762#1 AAACCTGATTCCTTCAACGATGTTTCTTAGCTGATGAGTTCGCTTTCCCTTTGTTGCCCG 514 ************************************************************ consensus_4762#0 TTATCCATAATATAT-AGGGGGTGTGACGAATAGCATATTCATATGTACTACAATCAAAT 651 consensus_4762#1 TTATCCATAATATATTAGGGGGTGTGACGAATAGCATATTCATATGTACTAC-------- 566 *************** ************************************ consensus_4762#0 AAATTACCATGCAAGCAATGAATG 675 consensus_4762#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||