These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1188 fasta sequence [AGAATCGGCCGAGGCATGTNAAGATCGGTGCGACTGGGGTCGCATCTGCAGAAGGCGACCTGTGGCTTTGGGGAGTGCAATCTGGGCAGTCTGATAGCTGACTCGATGGTGGCCGCCTTTGTGCCGAAGGCCGAACCGGGCCAAATGGACCTATGCAGCCGTTGCCGTCCTTGCCGTCGGGTGGCATTCGAGTAGGACTTGTTCCGTGGAGATCTTGCGGTTTCAAAAACCTTGGATCCGAAAGGTGGCTTGGCCGGTTTCGGAAGAACCGCGGCCTCCGGTTCTTGGTTTTCCGAACATTGCGCCGGGGCGGAAACCCAATCCTTAGAATTCCGGAGGCCTTGATTGGAAGGTTACCAAGGTTGGTGGGCCCAAAAGTTCCTTTGGGGGGACGGAGGGAACCCGGGGTTTTCCAAACCGGGTTGCCCAAACCAATTGCCTTGCCACGGGGTTGTTCCCGCGGGTTTTTGNCGGCGGTTCCTTGGTTCCAAACCGGTTCAACCAAAACCCCCGGGGGTCCCAGNGGGGAAAACCCGGGGGGTTGGCCTTCCGGCCGGTTTTGGGAACCGGTTTGCCTTGGTTGGTCCACTTGGAATTTCGGTTGAAACCGGGTTTGGCCCCCNAAGNTAACGGCCGGCCCCGGGGTAGGAAAACCCCGGGTTTCCCCGGCGGAAAAAGTTATTCCTGCCGGGTTCCAATTAAACGGANAAACATTCCGGTTTTCCCCCTTGNGACCGCGAGGCGCGGATNCGGGTTGAATTGCGGGGTTTTTAAGCCAATTGGTTATCCGGCAAGGCCGGGTTAACGGCGGAACCAAGCGGAAAAAAAGNGCGGTTGGACAATTGGGGGGCCCCGGGGTTAAAGGCAGTATTTCGAGCGGCCGGTTTTTCGAAGAAAGGGCCTTACGGTTTCCGAGGGGGAACCCCAGAAGTTCCGGGCCCCCCNGGGTTGCCTTTGGCCACGGGGGGCAATTTTGGGNANTTTACGGAACAGCGGGCACTTTANACCGGGGTTTTACTTAAACCGGGTTAAGAAGGTAAGACCAAGAAGTACCCTTTTGGNGGGGGTTAAAGCTTAGGGTAACCTTTNGGNTTGGTTNAAGGTCAAACATTAGGGGGTCNANAAGAGTTAAACTCTCACATTTTTTCTTTCCAGTTACCAGCCNTTTTTAAAAGGTTTTANAAGAGA] [+] EMBL BX468583 [AGAATCGGCCGAGGCATGTNAAGATCGGTGCGACTGGGGTCGCATCTGCAGAAGGCGACCTGTGGCTTTGGGGAGTGCAATCTGGGCAGTCTGATAGCTGACTCGATGGTGGCCGCCTTTGTGCCGAAGGCCGAACCGGGCCAAATGGACCTATGCAGCCGTTGCCGTCCTTGCCGTCGGGTGGCATTCGAGTAGGACTTGTTCCGTGGAGATCTTGCGGTTTCAAAAACCTTGGATCCGAAAGGTGGCTTGGCCGGTTTCGGAAGAACCGCGGCCTCCGGTTCTTGGTTTTCCGAACATTGCGCCGGGGCGGAAACCCAATCCTTAGAATTCCGGAGGCCTTGATTGGAAGGTTACCAAGGTTGGTGGGCCCAAAAGTTCCTTTGGGGGGACGGAGGGAACCCGGGGTTTTCCAAACCGGGTTGCCCAAACCAATTGCCTTGCCACGGGGTTGTTCCCGCGGGTTTTTGNCGGCGGTTCCTTGGTTCCAAACCGGTTCAACCAAAACCCCCGGGGGTCCCAGNGGGGAAAACCCGGGGGGTTGGCCTTCCGGCCGGTTTTGGGAACCGGTTTGCCTTGGTTGGTCCACTTGGAATTTCGGTTGAAACCGGGTTTGGCCCCCNAAGNTAACGGCCGGCCCCGGGGTAGGAAAACCCCGGGTTTCCCCGGCGGAAAAAGTTATTCCTGCCGGGTTCCAATTAAACGGANAAACATTCCGGTTTTCCCCCTTGNGACCGCGAGGCGCGGATNCGGGTTGAATTGCGGGGTTTTTAAGCCAATTGGTTATCCGGCAAGGCCGGGTTAACGGCGGAACCAAGCGGAAAAAAAGNGCGGTTGGACAATTGGGGGGCCCCGGGGTTAAAGGCAGTATTTCGAGCGGCCGGTTTTTCGAAGAAAGGGCCTTACGGTTTCCGAGGGGGAACCCCAGAAGTTCCGGGCCCCCCNGGGTTGCCTTTGGCCACGGGGGGCAATTTTGGGNANTTTACGGAACAGCGGGCACTTTANACCGGGGTTTTACTTAAACCGGGTTAAGAAGGTAAGACCAAGAAGTACCCTTTTGGNGGGGGTTAAAGCTTAGGGTAACCTTTNGGNTTGGTTNAAGGTCAAACATTAGGGGGTCNANAAGAGTTAAACTCTCACATTTTTTCTTTCCAGTTACCAGCCNTTTTTAAAAGGTTTTANAAGAGA] consensusID : consensus_4765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 957 fasta sequence [CAGATCGGCACAGGGCTTNTGTACACGGGCGATCATCCGACCATTCGATGAATCCCGTGTCCGAATATCCAACAGTCGTCAGTCAACCGAACGGACATCGGGTGCTGATCGTGCAGGCTTCCGCCTACACCAAGCTGGTCGGGGACATTGTGCTGTACTTTGACGAGCAGGGCGTCATTCAACGGTGGGAAGGTAATCCAATCTATCTGAGCAATGACATTGTGCCGGATCCGACCGTGGCCCAGGCACTGATCCCGTGGAAGGTTGCGGTGGACGAGATCGGCAACAGAAAGATCGGTGCGACTGGGGTCGATCTGCAGAAGGCGACCTGTGGCTTTGGGGAGTGCAATCTGGGCAGTTTGATAGCTGACTCGATGGTGGCCGCCTTTGTGCCGAAGGCCGAACCGGGGCCAATGGACCGTATGCAGCCGTTGCCGTCCTTGCCGTCGGTGGCATTCGAGTAGGACTGTTCCGTGGAGATCTTGCGTTCAAAAACCTGATCGAAGTGCTGCCGTTCGAGAACGCGCTCGTCTGTTTCGACATGCGCGGCGACCATCTGATCGAGCTGATGGAGTACAGTGTGGCCAAGTCTTGGGACGAGGACCGGTTCAACGGTGCCAACATGCTGCAGGTGTCCGGTTTGCGCGTCCTGTTCAACGTCACCAACCCGGTCGGGGAACGGGTGCTCGCGTTGGACGTGCTGTGTCATGATTGTGACGTGCCCAAGTACGCGCCGGTAGAACCGTTCCGGAAGTATCGCGTCATAACGAACTCGTTCCTGGCCGGCGGTGGTGATGGGTTTACCATGTTCGAGCGGTACGGACAGCGAAAGGTGAATGGGCCGGTAGATATCGACGCGTTCGAGAGCTACGTTCGGGACCGATCGCCCGTGCTGCANGGGATTGGATGGAAGGATAACGGTTCTAACGTAGAGTAGCAATCTTTGGGGTAGTGGTA] [+] EMBL BX468032 [CAGATCGGCACAGGGCTTNTGTACACGGGCGATCATCCGACCATTCGATGAATCCCGTGTCCGAATATCCAACAGTCGTCAGTCAACCGAACGGACATCGGGTGCTGATCGTGCAGGCTTCCGCCTACACCAAGCTGGTCGGGGACATTGTGCTGTACTTTGACGAGCAGGGCGTCATTCAACGGTGGGAAGGTAATCCAATCTATCTGAGCAATGACATTGTGCCGGATCCGACCGTGGCCCAGGCACTGATCCCGTGGAAGGTTGCGGTGGACGAGATCGGCAACAGAAAGATCGGTGCGACTGGGGTCGATCTGCAGAAGGCGACCTGTGGCTTTGGGGAGTGCAATCTGGGCAGTTTGATAGCTGACTCGATGGTGGCCGCCTTTGTGCCGAAGGCCGAACCGGGGCCAATGGACCGTATGCAGCCGT ] [+] EMBL BX623941 [ CTGGGGTCGATCTGCAGAAGGCGACCTGTGGCTTTGGGGAGTGCAATCTGGGCAGTCTGATAGCTGACTCGATGGTGGCCGCCTTTGTGCCGAAGGCCGAACC GGGCCAATGGACC TATGCAGCCGTTGCCGTCCTTGCCGTCGGTGGCATTCGAGTAGGACTGTTCCGTGGAGATCTTGCGTTCAAAAACCTGATCGAAGTGCTGCCGTTCGAGAACGCGCTCGTCTGTTTCGACATGCGCGGCGACCATCTGATCGAGCTGATGGAGTACAGTGTGGCCAAGTCTTGGGACGAGGACCGGTTCAACGGTGCCAACATGCTGCAGGTGTCCGGTTTGCGCGTCCTGTTCAACGTCACCAACCCGGTCGGGGAACGGGTGCTCGCGTTGGACGTGCTGTGTCATGATTGTGACGTGCCCAAGTACGCGCCGGTAGAACCGTTCCGGAAGTATCGCGTCATAACGAACTCGTTCCTGGCCGGCGGTGGTGATGGGTTTACCATGTTCGAGCGGTACGGACAGCGAAAGGTGAATGGGCCGGTAGATATCGACGCGTTCGAGAGCTACGTTCGGGACCGATCGCCCGTGCTGCANGGGATTGGATGGAAGGATAACGGTTCTAACGTAGAGTAGCAATCTTTGGGGTAGTGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4765#0 AGAATCGGCCGAGGCATGTNAAGATCGGTGCGACTGGGGTCGCATCTGCAGAAGGCGACC 60 consensus_4765#1 --------------------------------------------------CAGATCGGCA 10 * ** * consensus_4765#0 TGTGGCTTTGGGGAGTGCAATCTGGGCAGTCTGATAGCTGACTCGATGGTGGCCGCCTTT 120 consensus_4765#1 CAGGGCTTNT----GTACA---CGGGCGATCATCCGACC-ATTCGATGAATCCCGTGT-- 60 ***** ** ** **** ** * * ****** *** * consensus_4765#0 GTGCCGAAGGCCGAACCGGGCCAAATGGACCTATGCAGCCGTTGCCGTCCTTGCCGTCGG 180 consensus_4765#1 ---CCGAATATCCAACAGTCGTCAGTCAACCGA-ACGGACATCGG-GTGCTGATCGT--G 113 ***** * *** * * * *** * * * * * * ** ** *** * consensus_4765#0 GTGGCATTCGAGTAGGACTTGTTCCGTGGAGATCTTGCGGTTTCAAAAACCTTGGATCCG 240 consensus_4765#1 CAGGCTTCCGCCTACACCAAGCTGGTCGGGGACATTGTGCTGTA------CTTTGACGAG 167 *** * ** ** * * * ** ** *** * * * *** ** * consensus_4765#0 AAAGGTGGCTTGGCCGGTTTCGGAAGAACCGCGGCCTCCGGTTCTTGGTTTTCCGAACAT 300 consensus_4765#1 CAGGGCGTCATTCAACGGTGGGAAGGTAATCCAATCTA----TCTGAGCAAT---GACAT 220 * ** * * * * * * * * * * ** *** * * **** consensus_4765#0 TGCGCCGGGGCGGAAACCCAATCCTTAGAATTCCGGAGGCCTTGATTGGAAGGTTACCAA 360 consensus_4765#1 TGTGCCGGATCCGA--CCGTGGCCCAGGCACT-----GATCCCG--TGGAAGGTTGC--- 268 ** ***** * ** ** ** * * * * * * ********* * consensus_4765#0 GGTTGGTGGGCCCAAAAGTTCCTTTGGGGGGACGGAGGGAACCCGGGGTTTTCCAAACCG 420 consensus_4765#1 GGTGGACGAGATCGGCAAC------AGAAAGATCGGTGCGACTGGGGTCGATCTGCAGAA 322 *** * * * * * * ** * * ** *** ** * consensus_4765#0 GGTTGCCCAAACCAATTGCCTTGCCACGGGGTTGTTCCCGCGGGTTTTTGNCGGC-GGTT 479 consensus_4765#1 GGC------GACCTGTGGCTTTG----GGGAGTGCAATCTGGGCAGTTTGATAGCTGACT 372 ** *** * ** *** *** ** * ** **** ** * * consensus_4765#0 CCTTGGTTCCAAACCGGTTCAACCAAAACCCCCGGGGGTCCCAGNGGGGAAAACCCGGGG 539 consensus_4765#1 CGATGGTGGCCGCCT--TTGTGCCGAAGGCCGAACCGGGGCCAATGGACCGTATGCAGCC 430 * **** * * ** ** ** ** ** *** ** * * * consensus_4765#0 GGTTGGCCTTCCGGCCGGTTTTGGGAACCGGTTTGCCTTGGTTGGTCCACTTGGAATTTC 599 consensus_4765#1 G-TTGCCGTCCTTGCCGTCGGTGGCATTCGAGTAG----GACTGTTCCGTGGAGATCTTG 485 * *** * * * **** *** * ** * * * ** *** ** ** consensus_4765#0 GGTTGAAACCGGGTTTGGCCCCCNAAGNTAACGGCCGGCCCCGGGGTAGGAAAACCCCGG 659 consensus_4765#1 CGTTCAAA---AACCTGAT---CGAAGT--GCTGCCGTTC-------GAGAACGCGCTCG 530 *** *** ** * *** * **** * *** * * * consensus_4765#0 GTTTCCCCGGCGGAAAAAGTTATTCCTGCCGGGTTCCAATTAAACGGANAAACATTCCGG 719 consensus_4765#1 TCTGTTTCGACATGCGCGGCGACCA---------TCTGATCGAGCTGATGGAG--TACAG 579 * ** * * * ** ** * * ** * * * * consensus_4765#0 TTTTCCCCCTTGNGACCGCGAGGCGCGGATNCGGGTTGAATTGCGGGGTTTTTAAGCCAA 779 consensus_4765#1 TGTGGCC-----AAGTCTTGGGACGAGGACC--GGTTCAACGGTGCCAACATGCTGC-AG 631 * * ** * * * ** *** **** ** * * * ** * consensus_4765#0 TTGGTTATCCGGCAAGGCCGGGTTAACGGCGGAACCAAGCGGAAAAAAAGNGCGGTTGGA 839 consensus_4765#1 GTGTCCGGTTTGCGCGTCCTGTTCAACGTC---ACCAACC------------CGGTCGGG 676 ** ** * ** * * **** * ***** * **** ** consensus_4765#0 CAATTGGGGGGCCCCGGGGTTAAAGGCAGTATTTCGAGCGGCCGGTTTTTCGAAGAAAGG 899 consensus_4765#1 GAAC----GGGTGCTCGCGTTGGACGTGCTGTGTCATGATTGTGACGTGCCCAAGTACGC 732 ** *** * * *** * * * * ** * * * * *** * * consensus_4765#0 GCCT-TACGGTTTCCGAGGGGGAACCCCAGAAGTTCCGGGCCCCCCNGGGTTGCCTTTGG 958 consensus_4765#1 GCCGGTAGAACCGTTCCGGAAGTATCGCGTCATAACGAACTCGTTCCTGGCCGGCGGTGG 792 *** ** ** * * * * * * * * ** * * *** consensus_4765#0 CCACGGGGGGCAATTTTGGGNANTTTACGGAACAGCGGGCACTTTANACCGGGGTTTTAC 1018 consensus_4765#1 TGATGGGTTTACCATGTTCGAGCGGTACGGA-CAGCGAAAGGTGAATGGGCCGGTAGATA 851 * *** * * * ****** ***** * * *** consensus_4765#0 TTAAACCGGGTTAAGAAGGTAAGACCAAGA---AGTACCCTT-TTGGNGGGGGTTAAAGC 1074 consensus_4765#1 TCGA--CGCGTTCGAGAGCTACGTTCGGGACCGATCGCCCGTGCTGCANGGGATTGGATG 909 * * ** *** ** ** * * ** * *** * ** *** ** * consensus_4765#0 TTAGGGTAACCTTTNGGNTTGGTTNAAGGTCAAACATTAGGGGGTCNANAAGAGTTAAAC 1134 consensus_4765#1 GAAGGATAACGGTTCTAAC--GTAGAGTAGCAATCTTTGGGGTAGTGGTA---------- 957 *** **** ** ** * *** * ** *** * consensus_4765#0 TCTCACATTTTTTCTTTCCAGTTACCAGCCNTTTTTAAAAGGTTTTANAAGAGA 1188 consensus_4765#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||