cluster # 4772

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Anopheles gambiae
cluster # 4772 cluster # 4772 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4772#0 length = 885 sequences # 2

consensus_4772#1 length = 375 sequences # 1

consensusID : consensus_4772#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 885
fasta sequence

                              [CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTCACGGGGACACTAAGAGAGAACGAGTGAGAACGAGTGAGATAGGAGAACGCACACATATCCTTAAGGAGGTTCTGTGGAAAGCAGGAAAGGAAGAAGAAACACACACACACACACACACACACACACACACACACACACACACACACACACACATACAGATGAAGTCCATCCGGAGCGCTCTACTACCAAGCAAACCAGTTTTCCAGAGCACTGGCGTAGTTTGCGCTTTTCGAGACGGAAAGATTCTTATCGAACAGTAAACCCAATACACACACACATGCAGAAAAGGAAAGCATAATAACGGCATTAGTTTGGTGTGCGGTAGAGCATTAGCCACCACTTCCAGCCGCCCTGAAAAGGGAACGGACGTGTTCGTCACAGTAGCTCGTCGCCACATTCGCGTTGTTTCGTCGAAACCACACCGCGCCTAGCTCTTACGCAGTAGGTGCCAAAGCAGCAATTTGCCTGGCAGATAGTACACAGCTAGCTTACTTTTAAATAACGCGTGCTCAACACTAAACCAAAAC--ACATTCACCTTACGCATTAGCGCTAGATCGGCACCTCCTGTGCGCCTGTTCGTAGGCAATCCGCGCTGTGTGCGCTTGCCGCACGGCAGGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCTGCAGGCGCTCCCAGCAAAACGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTTTTTTTTGTTTATAATTTTTATATAGAGACGATAGGTTAGGAACGCACGCACGGGAATTGTCGGGAGCTGTTTATTCGAAAACCGGCGCTGTGGTGTAGTAGCTCA]

[+] EMBL BM585002             [CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTCACGGGGACACTAAGAGAGAACGAGTGAGAACGAGTGAGATAGGAGAACGCACACATATCCTTAAGGAGGTTCTGTGGAAAGCAGGAAAGGAAGAAGAAACACACACACACACACACACACACACACACACACACACACACACACACACACACATACAGATGAAGTCCATCCGGAGCGCTCTACTACCAAGCAAACCAGTTTTCCAGAGCACTGGCGTAGTTTGCGCTTTTCGAGACGGAAAGATTCTTATCGAACAGTAAACCCAATACACACACACATGCAGAAAAGGAAAGCATAATAACGGCATTAGTTTGGTGTGCGGTAGAGCATTAGCCACCACTTCCAGCCGCCCTGAAAAGGGAACGGACGTGTTCGTCACAGTAGCTCGTCGCCACATTCGCGTTGTTTCGTCGAAACCACACCGCGCCTAGCTCTTACGCAGTAGGTGCCAAAGCAGCAATTTGCCTGGCAGATAGTACACAGCTAGCTTACTTTTAAATAACGCGTGCTCAACACTAAACCAAAAC  ACATTCACCTTACGCATTAGCGCTAGATCGGCACCTCCTGTGCGCCTGTTCGTAGGC                                                                                                                                                                                                                                                                ]
[+] EMBL BM599552             [                                                                                                                                                                                                                                                                         ccGCGCTTTTCGAGACGGAAAGATTCTTATCGAACAGTAAACCCAATACACACACACATGCAGAAAAGGAAAGCATAATAACGGCATTAGTTTGGTGTGCGGTAGAGCATTAGCCACCACTTCCAGCCGCCCTGAAAAGGGAACGGACGTGTTCGTCACAGTAGCTCGTCGCCACATTCGCGTTGTTTCGTCGAAACCACACCGCGCCTAGCTCTTACGCAGTAGGTGCCAAAGCAGCAATTTGCCTGGCAGATAGTACACAGCTAGCTTACTTTTAAATAACGCGTGCTCAACACTAAACCAAAACAAACATTCACCTTACGCATTAGCGCTAGATCGGCACCTCCTGTGCGCCTGTTCGTAGGCAATCCGCGCTGTGTGCGCTTGCCGCACGGCAGGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCTGCAGGCGCTCCCAGCAAAACGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTTTTTTTTGTTTATAATTTTTATATAGAGACGATAGGTTAGGAACGCACGCACGGGAATTGTCGGGAGCTGTTTATTCGAAAACCGGCGCTGTGGTGTAGTAGCTCA]




>consensus_4772#0
CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTCACGGGGACACTAAGA
GAGAACGAGTGAGAACGAGTGAGATAGGAGAACGCACACATATCCTTAAGGAGGTTCTGT
GGAAAGCAGGAAAGGAAGAAGAAACACACACACACACACACACACACACACACACACACA
CACACACACACACACACATACAGATGAAGTCCATCCGGAGCGCTCTACTACCAAGCAAAC
CAGTTTTCCAGAGCACTGGCGTAGTTTGCGCTTTTCGAGACGGAAAGATTCTTATCGAAC
AGTAAACCCAATACACACACACATGCAGAAAAGGAAAGCATAATAACGGCATTAGTTTGG
TGTGCGGTAGAGCATTAGCCACCACTTCCAGCCGCCCTGAAAAGGGAACGGACGTGTTCG
TCACAGTAGCTCGTCGCCACATTCGCGTTGTTTCGTCGAAACCACACCGCGCCTAGCTCT
TACGCAGTAGGTGCCAAAGCAGCAATTTGCCTGGCAGATAGTACACAGCTAGCTTACTTT
TAAATAACGCGTGCTCAACACTAAACCAAAACACATTCACCTTACGCATTAGCGCTAGAT
CGGCACCTCCTGTGCGCCTGTTCGTAGGCAATCCGCGCTGTGTGCGCTTGCCGCACGGCA
GGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCT
GCAGGCGCTCCCAGCAAAACGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTT
TTTTTTGTTTATAATTTTTATATAGAGACGATAGGTTAGGAACGCACGCACGGGAATTGT
CGGGAGCTGTTTATTCGAAAACCGGCGCTGTGGTGTAGTAGCTCA

consensusID : consensus_4772#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence

                              [CCGCCCACGCGTCCGATCCGCGCTGTGTGCGCTTGCCGCACGGCAGGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCTGCAGGCGCTCCCAGCAAAGCGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTTTTTTTTGTTTATAATTTTTATATCGAGACGATAGGTTAAGAACGCACGCACGGGAATTGTCGGGAGCTGTTTATTCGCAAACCGGCGCTGTGGTGTAGTAGCTCAGGTAGTGGTACCGTGCAACCGCGAACCAAGCGTTCCGAGACAGAGAGGGAAAGCACGACAAAAAAAAATAAAAAAATAAAATAAAAATAAAACCTCATACTCCTC]

[+] EMBL BM625587             [CCGCCCACGCGTCCGATCCGCGCTGTGTGCGCTTGCCGCACGGCAGGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCTGCAGGCGCTCCCAGCAAAGCGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTTTTTTTTGTTTATAATTTTTATATCGAGACGATAGGTTAAGAACGCACGCACGGGAATTGTCGGGAGCTGTTTATTCGCAAACCGGCGCTGTGGTGTAGTAGCTCAGGTAGTGGTACCGTGCAACCGCGAACCAAGCGTTCCGAGACAGAGAGGGAAAGCACGACAAAAAAAAATAAAAAAATAAAATAAAAATAAAACCTCATACTCCTC]




>consensus_4772#1
CCGCCCACGCGTCCGATCCGCGCTGTGTGCGCTTGCCGCACGGCAGGCGTTTGCAAGCAC
CGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCTGCAGGCGCTCCCAGC
AAAGCGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTTTTTTTTGTTTATAAT
TTTTATATCGAGACGATAGGTTAAGAACGCACGCACGGGAATTGTCGGGAGCTGTTTATT
CGCAAACCGGCGCTGTGGTGTAGTAGCTCAGGTAGTGGTACCGTGCAACCGCGAACCAAG
CGTTCCGAGACAGAGAGGGAAAGCACGACAAAAAAAAATAAAAAAATAAAATAAAAATAA
AACCTCATACTCCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4772#0      CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTCACGGGGACACTAAGA 60
consensus_4772#1      ------------------------------------------------------------
                                                                                  

consensus_4772#0      GAGAACGAGTGAGAACGAGTGAGATAGGAGAACGCACACATATCCTTAAGGAGGTTCTGT 120
consensus_4772#1      ------------------------------------------------------------
                                                                                  

consensus_4772#0      GGAAAGCAGGAAAGGAAGAAGAAACACACACACACACACACACACACACACACACACACA 180
consensus_4772#1      ------------------------------------------------------------
                                                                                  

consensus_4772#0      CACACACACACACACACATACAGATGAAGTCCATCCGGAGCGCTCTACTACCAAGCAAAC 240
consensus_4772#1      ------------------------------------------------------------
                                                                                  

consensus_4772#0      CAGTTTTCCAGAGCACTGGCGTAGTTTGCGCTTTTCGAGACGGAAAGATTCTTATCGAAC 300
consensus_4772#1      ------------------------------------------------------------
                                                                                  

consensus_4772#0      AGTAAACCCAATACACACACACATGCAGAAAAGGAAAGCATAATAACGGCATTAGTTTGG 360
consensus_4772#1      ------------------------------------------------------------
                                                                                  

consensus_4772#0      TGTGCGGTAGAGCATTAGCCACCACTTCCAGCCGCCCTGAAAAGGGAACGGACGTGTTCG 420
consensus_4772#1      ------------------------------------------------------------
                                                                                  

consensus_4772#0      TCACAGTAGCTCGTCGCCACATTCGCGTTGTTTCGTCGAAACCACACCGCGCCTAGCTCT 480
consensus_4772#1      ------------------------------------------------------------
                                                                                  

consensus_4772#0      TACGCAGTAGGTGCCAAAGCAGCAATTTGCCTGGCAGATAGTACACAGCTAGCTTACTTT 540
consensus_4772#1      ------------------------------------------------------------
                                                                                  

consensus_4772#0      TAAATAACGCGTGCTCAACACTAAACCAAAACACATTCACCTTACGCATTAGCGCTAGAT 600
consensus_4772#1      ------------------------------------------------------------
                                                                                  

consensus_4772#0      CGGCACCTCCTGTGCGCCTGTTCGTAGGCAATCCGCGCTGTGTGCGCTTGCCGCACGGCA 660
consensus_4772#1      -------------CCGCCCACGCGTC--CGATCCGCGCTGTGTGCGCTTGCCGCACGGCA 45
                                    ****    ***   * ******************************

consensus_4772#0      GGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCT 720
consensus_4772#1      GGCGTTTGCAAGCACCGGCCCGAAGCAAACACGGAGCGCGGAGTGCGCGTTGCATACGCT 105
                      ************************************************************

consensus_4772#0      GCAGGCGCTCCCAGCAAAACGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTT 780
consensus_4772#1      GCAGGCGCTCCCAGCAAAGCGGGACCTAGTGGCACGTGTTGCTGTTGTTTTTATCTTTTT 165
                      ****************** *****************************************

consensus_4772#0      TTTTTTGTTTATAATTTTTATATAGAGACGATAGGTTAGGAACGCACGCACGGGAATTGT 840
consensus_4772#1      TTTTTTGTTTATAATTTTTATATCGAGACGATAGGTTAAGAACGCACGCACGGGAATTGT 225
                      *********************** ************** *********************

consensus_4772#0      CGGGAGCTGTTTATTCGAAAACCGGCGCTGTGGTGTAGTAGCTCA--------------- 885
consensus_4772#1      CGGGAGCTGTTTATTCGCAAACCGGCGCTGTGGTGTAGTAGCTCAGGTAGTGGTACCGTG 285
                      ***************** ***************************               

consensus_4772#0      ------------------------------------------------------------
consensus_4772#1      CAACCGCGAACCAAGCGTTCCGAGACAGAGAGGGAAAGCACGACAAAAAAAAATAAAAAA 345
                                                                                  

consensus_4772#0      ------------------------------
consensus_4772#1      ATAAAATAAAAATAAAACCTCATACTCCTC 375