These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4778#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 740 fasta sequence [CCGTCCAAACAAACATGTTTATTATTGTTTCAGAATCTCTGGCTGCTGGTAGAAAGTTGTTCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTAATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTGAAGCCCAAGGATATCACGCTACCCAAGCTTGAAAAATGTTTACAATCAATACAATCCTGCCCATTTCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTTGCTGTGCAGTACTGTGCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAAAGTGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATCTTGTGCGCCAATTCACGCTCCATCTGTACCTTCCCCGTGAACTGCGTGGCGTATCCAAATGTGAAGCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACCTACTGCACGGCCCAATTTCGACGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGACGATGTCTAGCAGACACTGTGATCGATTTTTTAGCAGCCAGCTATAGCCTTGCGAAAACTACTTTAATGCAAAACAATAGCCTCCCGGCCTTTCCCAGGGAACACAT-GTTTAGAAGTTTGCTGGTGATAAAAGGCTCCCCAGGATTGCC] [+] EMBL BM603291 [CCGTCCAAACAAACATGTTTATTATTGTTTCAGAATCTCTGGCTGCTGGTAGAAAGTTGTTCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTAATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTGAAGCCCAAGGATATCACGCTACCCAAGCTTGAAAAATGTTTACAATCAATACAATCCTGCCCATTTCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTTGCTGTGCAGTACTGTGCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAAAGTGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATCTTGTGCGCCAATTCACGCTCCATCTGTACCTTCCCCGTGAACTGCGTGGCGTATCCAAATGTGAAGCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACCTACTGCACGGCCCAATTTCGACGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGACGATGTCTAGCAGACACTGTGATCGATTTTTTAGCAGCCAGCTATAGCCTTGCGAAAACTACTTTAATGCAAAACAATAGCCTCCCGGCCTTTCCCAGGGAACACAT GTTTAGAAGTTTGC ] [+] EMBL BM594173 [ ccggGTTGTTCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTAATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTGAAGCCCAAGGATATCACGCTTCCCAAGCTTGAAGAATGTTTACAATCAATACAATCCAGCCCATTGCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTCGCTGTGCAGTACTGTGCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAAAGCGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATATTGTGCGCCAATTCACGCTCCATCTGTACCTGCCCCGTGAACTGCGTGGCGTATCGAAATGTGAAGCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACGTACTGCACGGCCCAATTTCGTCGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGA CTAGCAGACACTGTGATCGATTTCTTAGCAGCCAGCTATAGTCTCGCAAAAACCACTTTGATGCAAAACAATAGCCTCCCGGCCTTTCCCAGGG ACCCATGGTTTAGAAGTTTGCTGGTGATAAAAGGCTCCCCAGGATTGCC] consensusID : consensus_4778#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTAATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTGAAGCCCAAGGATATCACGCTTCCCAAGCTTGAAGAATGTTTACAATCAATACAATCCAGCCCATTGCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTCGCTGTGCAGTACTGTGCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAAAGCGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATATTGTGCGCCAATTCACGCTCCATCTGTACCTGCCCCGTGAACTGCGTGGCGTATCGAAATGTGAAGCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACGTACTGCACGGCCCAATTTCGTCGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGACTAGCAGACACTGTGATCGATTTCTTAGCAGCCAGCTATAGTCTCGCAAAAACCACTTTGATGCAAAACAATAGCCTCCCGGCCTTTC] [+] EMBL BM632998 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTAATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTGAAGCCCAAGGATATCACGCTTCCCAAGCTTGAAGAATGTTTACAATCAATACAATCCAGCCCATTGCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTCGCTGTGCAGTACTGTGCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAAAGCGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATATTGTGCGCCAATTCACGCTCCATCTGTACCTGCCCCGTGAACTGCGTGGCGTATCGAAATGTGAAGCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACGTACTGCACGGCCCAATTTCGTCGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGACTAGCAGACACTGTGATCGATTTCTTAGCAGCCAGCTATAGTCTCGCAAAAACCACTTTGATGCAAAACAATAGCCTCCCGGCCTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4778#0 CCGTCCAAACAAACATGTTTATTATTGTTTCAGAATCTCTGGCTGCTGGTAGAAAGTTGT 60 consensus_4778#1 ------------------------------CCGCCCACGCGTCCGCCCAC-GCGTCCGGT 29 * * * * ** * ** consensus_4778#0 TCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTA 120 consensus_4778#1 TCCTCCGCTTGTTAGAATTACGAATACAATAGGAGTTTATTGCCTAAGGCACGTGGAGTA 89 ************************************************************ consensus_4778#0 ATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTG 180 consensus_4778#1 ATTGTTATTGGAATGGAGATTAAAGCGCTTCGCGACGTGATAACAAGCACGGCCAATTTG 149 ************************************************************ consensus_4778#0 AAGCCCAAGGATATCACGCTACCCAAGCTTGAAAAATGTTTACAATCAATACAATCCTGC 240 consensus_4778#1 AAGCCCAAGGATATCACGCTTCCCAAGCTTGAAGAATGTTTACAATCAATACAATCCAGC 209 ******************** ************ *********************** ** consensus_4778#0 CCATTTCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTTGCTGTGCAGTACTGT 300 consensus_4778#1 CCATTGCCTACGGAAGAGCCAAGCACCGATATACTGTGGAAAGTCGCTGTGCAGTACTGT 269 ***** ************************************** *************** consensus_4778#0 GCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAA 360 consensus_4778#1 GCCGTACTGACGGAATTTGCAGTCCAAGGGCTGGTGGAGAAGCAAAACCCAACGGCCGAA 329 ************************************************************ consensus_4778#0 AGTGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATCTTGTG 420 consensus_4778#1 AGCGACGAAGTGATAAACTTACACGATCAGGCACAATACCTTACCACGATCGATATTGTG 389 ** *************************************************** ***** consensus_4778#0 CGCCAATTCACGCTCCATCTGTACCTTCCCCGTGAACTGCGTGGCGTATCCAAATGTGAA 480 consensus_4778#1 CGCCAATTCACGCTCCATCTGTACCTGCCCCGTGAACTGCGTGGCGTATCGAAATGTGAA 449 ************************** *********************** ********* consensus_4778#0 GCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACCTACTGCACG 540 consensus_4778#1 GCCCAGCTGATGGTGAAGCTAGAAGAGCAGGAACGTGTGCGAAGGCTCACGTACTGCACG 509 ************************************************** ********* consensus_4778#0 GCCCAATTTCGACGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGACGATGTCTA 600 consensus_4778#1 GCCCAATTTCGTCGGGTGTTTGAAACGAAACTGTTAGCTCTTCATCCACGAC------TA 563 *********** **************************************** ** consensus_4778#0 GCAGACACTGTGATCGATTTTTTAGCAGCCAGCTATAGCCTTGCGAAAACTACTTTAATG 660 consensus_4778#1 GCAGACACTGTGATCGATTTCTTAGCAGCCAGCTATAGTCTCGCAAAAACCACTTTGATG 623 ******************** ***************** ** ** ***** ***** *** consensus_4778#0 CAAAACAATAGCCTCCCGGCCTTTCCCAGGGAACACATGTTTAGAAGTTTGCTGGTGATA 720 consensus_4778#1 CAAAACAATAGCCTCCCGGCCTTTC----------------------------------- 648 ************************* consensus_4778#0 AAAGGCTCCCCAGGATTGCC 740 consensus_4778#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||