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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 950 fasta sequence
[CCCCGAGGTTTNAGTATGCAAAGCTCGCTTACTACGGGAGCCGCTCTAGTGTTTAGCAAAGCAAATCATCACATTTCTCTATAATCGCTAGCAAGTTACTGCATTAAACGAAGATATGGCTGGCACAGAGGTCGTGGTAAAACAAATGGGACCTTGACGCAAGAGCAACTGCAATCTTTGGGAGTCACAAGCAAAGAAATGCAGACCGCTAACATCGGCAGCTCCACCTCCGTTGTATCCAGCATTGCTAGCGAAACTGTACCTTTGGAGTCTAGCGCCGATCGGACTTACAAAATACTACTGAAAAGAAGATATTTATCTCGTATCTACGTGAATCGACCTACATACACTACAACAGAACACGTTCTNANACCTATCATNGTACAGCGATACAGCGATAACGTAATTAATGTNCATANACGAACGATACCGAAAACTAAGCGAGCAGGGNGATCTCCTTTGGAAACCTAATGCCTGCGGACACTAANAACCCGAGGCTACAAACCGAGTGACANACAATCACATTGGGACCAACACACATGCACAGCGACAGCGAAGTGCCGCTGATATTTGATGCGACGCTCACACCNCGCCCTAGGAACCAGACACAGAATCATCTGTGCCGAACCCGCNTCCGGGCATCATTTGTCACACAAAACANAGNAAGCAAACAAGTGGACCTTCCGCGCCCAGACATATNGACNACACACCANGACTGGCCGCTTGACTGCCCTNGAATNNNACGACACATNGGGGTATTGGCNANCCACCCCACCAAATGGGNNTGCACCNAACCACATGGCACTTAGTNGGCTACAATCAAACTAATATTCCGGANTAACGGGCGNACACCTACTAACTTGCCNGCACAGCACNACNAATNTNACACACGNANNGGGCCAAGCTAACATANAAACCCGACANGCGCCCCTACAGGACCNTGTANNGNA]
[+] EMBL AL930697 [CCCCGAGGTTTNAGTATGCAAAGCTCGCTTACTACGGGAGCCGCTCTAGTGTTTAGCAAAGCAAATCATCACATTTCTCTATAATCGCTAGCAAGTTACTGCATTAAACGAAGATATGGCTGGCACAGAGGTCGTGGTAAAACAAATGGGACCTTGACGCAAGAGCAACTGCAATCTTTGGGAGTCACAAGCAAAGAAATGCAGACCGCTAACATCGGCAGCTCCACCTCCGTTGTATCCAGCATTGCTAGCGAAACTGTACCTTTGGAGTCTAGCGCCGATCGGACTTACAAAATACTACTGAAAAGAAGATATTTATCTCGTATCTACGTGAATCGACCTACATACACTACAACAGAACACGTTCTNANACCTATCATNGTACAGCGATACAGCGATAACGTAATTAATGTNCATANACGAACGATACCGAAAACTAAGCGAGCAGGGNGATCTCCTTTGGAAACCTAATGCCTGCGGACACTAANAACCCGAGGCTACAAACCGAGTGACANACAATCACATTGGGACCAACACACATGCACAGCGACAGCGAAGTGCCGCTGATATTTGATGCGACGCTCACACCNCGCCCTAGGAACCAGACACAGAATCATCTGTGCCGAACCCGCNTCCGGGCATCATTTGTCACACAAAACANAGNAAGCAAACAAGTGGACCTTCCGCGCCCAGACATATNGACNACACACCANGACTGGCCGCTTGACTGCCCTNGAATNNNACGACACATNGGGGTATTGGCNANCCACCCCACCAAATGGGNNTGCACCNAACCACATGGCACTTAGTNGGCTACAATCAAACTAATATTCCGGANTAACGGGCGNACACCTACTAACTTGCCNGCACAGCACNACNAATNTNACACACGNANNGGGCCAAGCTAACATANAAACCCGACANGCGCCCCTACAGGACCNTGTANNGNA]
consensusID : consensus_4788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 728 fasta sequence
[CCGGCCGCATATTATTGATCGTATGCAAAGCTCGCTTACTACGGGAGCCGCTCTAGTGTTTAGCAAAGCAAATCATCACATTTCTCTATAATCGCTAGCAAGTTACTGCATTAAACGAAGATATGGCTGGAAGAGGTCGTGGTAAAACAAATGGGACCTTGACGCAAGAGCAACTGCAATCTTTGGGAGTCACAAGCAAAGAAATGCAGACCGTAACATCGGCAGCTCCACCTCCGTTGTATCCAGCATTGCTAGCGAAACCTGTACCTTTGGAGTCTAGCGCCGATCGGACTTACAAAATACTCTGGAAAGAAGATTTTATCTCGTATCTACGTGAATCGACCTACTACACTACAAAGAAAAGTTCTAAACTTCATGTACAGCGATACAGCGATAAAGTAATTAATGTTATAGAGAACGATCCGAAAACTAAGCGAGAGGGAGATTTTCTTTGGAAACTAATGCCTGCGGAACTAAAACCAAGCTACAAACGAGTGAAAAATTCATTGGGACCAACAAATGCAAAGCGGACAGCGAAGTGCCGCTGATATTGATGCAAAGCTAAAAGCACTAGAACAGAAAGAATCATCTGGCGACCGTTCGGATATTGTTAAAAAAGAGAAAAGTGACTCGGAAGATGAAAAAGATGGCGATGATGCTGATGGAAGAATTGGTTGATGAAGAGATGGATGACGACAATGATTATGGTAATAACTATTTCGATAACG]
[+] EMBL BM584539 [CCGGCCGCATATTATTGATCGTATGCAAAGCTCGCTTACTACGGGAGCCGCTCTAGTGTTTAGCAAAGCAAATCATCACATTTCTCTATAATCGCTAGCAAGTTACTGCATTAAACGAAGATATGGCTGGAAGAGGTCGTGGTAAAACAAATGGGACCTTGACGCAAGAGCAACTGCAATCTTTGGGAGTCACAAGCAAAGAAATGCAGACCGTAACATCGGCAGCTCCACCTCCGTTGTATCCAGCATTGCTAGCGAAACCTGTACCTTTGGAGTCTAGCGCCGATCGGACTTACAAAATACTCTGGAAAGAAGATTTTATCTCGTATCTACGTGAATCGACCTACTACACTACAAAGAAAAGTTCTAAACTTCATGTACAGCGATACAGCGATAAAGTAATTAATGTTATAGAGAACGATCCGAAAACTAAGCGAGAGGGAGATTTTCTTTGGAAACTAATGCCTGCGGAACTAAAACCAAGCTACAAACGAGTGAAAAATTCATTGGGACCAACAAATGCAAAGCGGACAGCGAAGTGCCGCTGATATTGATGCAAAGCTAAAAGCACTAGAACAGAAAGAATCATCTGGCGACCGTTCGGATATTGTTAAAAAAGAGAAAAGTGACTCGGAAGATGAAAAAGATGGCGATGATGCTGATGGAAGAATTGGTTGATGA ]
[+] EMBL BM618819 [ ccgCGTATGCAAAGCTCGCTTACTACGGGAGCCGCTCTAGTGTTTAGCAAAGCAAATCATCACATTTCTCTATAATCGCTAGCAAGTTACTGCATTAAACGAAGATATGGCTGGAAGAGGTCGTGGTAAAACAAATGGGACCTTGACGCAAGAGCAACTGCAATCTTTGGGAGTCACAAGCAAAGAAATGCAGACCGTAACATCGGCAGCTCCACCTCCGTTGTATCCAGCATTGCTAGCGAAACCTGTACCTTTGGAGTCTAGCGCCGATCGGACTTACAAAATACTCTGGAAAGAAGATTTTATCTCGTATCTACGTGAATCGACCTACTACACTACAAAGAAAAGTTCTAAACTTCATGTACAGCGATACAGCGATAAAGTAATTAATGTTATAGAGAACGATCCGAAAACTAAACGAGAGGGAGATTTTCTTTGGAAACTAATGCCTGCGGAACTAAAACCAAGCTACAAACGAGTGAAAAATTCATTGGGACCAACAAATGCAAAGC GACAGCGAAGTGCCGCTGATATTGATGCAAAGCTAAAAGCACTAGAACAGAAAGAATCATCTGGCGACCGTTCGGATATTGTTAAAAAAGAGAAAAGTGACTCGGAAGATGAAAAAGATGGCGATGATGCTGAT GAAGAATTGGTTGATGAAGAGATGGATGACGACAATGATTATGGTAATAACTATTTCGATAACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4788#0 ----CCCCGAGGTTTNA---GTATGCAAAGCTCGCTTACTACGGGAGCCGCTCTAGTGTT 53
consensus_4788#1 CCGGCCGCATATTATTGATCGTATGCAAAGCTCGCTTACTACGGGAGCCGCTCTAGTGTT 60
** * * * ****************************************
consensus_4788#0 TAGCAAAGCAAATCATCACATTTCTCTATAATCGCTAGCAAGTTACTGCATTAAACGAAG 113
consensus_4788#1 TAGCAAAGCAAATCATCACATTTCTCTATAATCGCTAGCAAGTTACTGCATTAAACGAAG 120
************************************************************
consensus_4788#0 ATATGGCTGGCACAGAGGTCGTGGTAAAACAAATGGGACCTTGACGCAAGAGCAACTGCA 173
consensus_4788#1 ATATGGCTGGAA--GAGGTCGTGGTAAAACAAATGGGACCTTGACGCAAGAGCAACTGCA 178
********** * **********************************************
consensus_4788#0 ATCTTTGGGAGTCACAAGCAAAGAAATGCAGACCGCTAACATCGGCAGCTCCACCTCCGT 233
consensus_4788#1 ATCTTTGGGAGTCACAAGCAAAGAAATGCAGACCG-TAACATCGGCAGCTCCACCTCCGT 237
*********************************** ************************
consensus_4788#0 TGTATCCAGCATTGCTAGCGAAAC-TGTACCTTTGGAGTCTAGCGCCGATCGGACTTACA 292
consensus_4788#1 TGTATCCAGCATTGCTAGCGAAACCTGTACCTTTGGAGTCTAGCGCCGATCGGACTTACA 297
************************ ***********************************
consensus_4788#0 AAATACTACTGAAAAGAAGATATTTATCTCGTATCTACGTGAATCGACCTACATACACTA 352
consensus_4788#1 AAATACT-CTGGAAAGAAGAT-TTTATCTCGTATCTACGTGAATCGACCTAC-TACACTA 354
******* *** ********* ****************************** *******
consensus_4788#0 CAACAGAACACGTTCTNANACCTATCATNGTACAGCGATACAGCGATAACGTAATTAATG 412
consensus_4788#1 CAA-AGAA-AAGTTCTAAACTTCAT----GTACAGCGATACAGCGATAAAGTAATTAATG 408
*** **** * ***** * ** ******************** **********
consensus_4788#0 TNCATANACGAACGATACCGAAAACTAAGCGAGCAGGGNGATCTCCTTTGGAAACCTAAT 472
consensus_4788#1 TT-ATAGA-GAACGAT-CCGAAAACTAAGCGAG-AGGGAGATTTTCTTTGGAAAC-TAAT 463
* *** * ******* **************** **** *** * ********** ****
consensus_4788#0 GCCTGCGGACACTAANAACCCGAGGCTACAAACCGAGTGACANACAATCACATTGGGACC 532
consensus_4788#1 GCCTGCGGA-ACTAAAA---CCAAGCTACAAAC-GAGTGAAAAATT----CATTGGGACC 514
********* ***** * * * ********* ****** * * **********
consensus_4788#0 AACACACATGCACAGCG-ACAGCGAAGTGCCGCTGATATTTGATGCGACGCTCACACCNC 591
consensus_4788#1 AACAA--ATGCAAAGCGGACAGCGAAGTGCCGCTGATATT-GATGCAAAGCTAA----AA 567
**** ***** **** ********************** ***** * *** *
consensus_4788#0 GCCCTAGGAACCAGACACAGAATCATCTGTGCCGAACCCGCNTCCGGGCATCATTTGTCA 651
consensus_4788#1 GCACTAGAA--CAGAAA--GAATCATCTG------GCGACCGTTCGGATATTGT---TAA 614
** **** * **** * ********** * * * *** ** * * *
consensus_4788#0 CACAAAACANAGNAAGCAAACAAGTGGACCTTCCGCGCCCAGACATATNGACNACACACC 711
consensus_4788#1 AAAAGAGAAAAGTGACTCGGAAGATGAA------------AAAGATGGCGATGATGC--- 659
* * * * ** * * ** * * * ** ** * *
consensus_4788#0 ANGACTGGCCGCTTGACTGCCCTNGAATNNNACGACACATNGGGGTATTG-GCNANCCAC 770
consensus_4788#1 -TGATGGAAGAATTGGTTGATGAAGAGATGGATGACGACAATGATTATGGTAATAACTAT 718
** * *** ** ** * *** * *** * * * *
consensus_4788#0 CCCACCAAATGGGNNTGCACCNAACCACATGGCACTTAGTNGGCTACAATCAAACTAATA 830
consensus_4788#1 TTCGATAACG-------------------------------------------------- 728
* **
consensus_4788#0 TTCCGGANTAACGGGCGNACACCTACTAACTTGCCNGCACAGCACNACNAATNTNACACA 890
consensus_4788#1 ------------------------------------------------------------
consensus_4788#0 CGNANNGGGCCAAGCTAACATANAAACCCGACANGCGCCCCTACAGGACCNTGTANNGNA 950
consensus_4788#1 ------------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||