These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4809#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence [TTCGCTATGTCATTTTGCTTCCTCTGCTTCTAATCTGTAGCGGCAGTTTGGGGGACCCGGTTTTCGTTGCAAAAATGATACACACGGTGTACGAAACGGGCAAACCTGGTTGGATGGAAGAACACGGTTGGACAGCGAACCTGCGGCGTTGATTCCAATTATGACGCGATGAACTTATATAATTATGCAAATTAGCTCGCTTCTCCACCTTTCTTTCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGTCGCGCGGGATAAAGAAAGAGAGAGAGAGAGAGAAAAAGGGAGGGCATACAAAACGTAATCTTGTGATTTTGGATAACCAACCGTTTTCGGACGATGTGCGTCCAGGCGTTGTGGTTCGATCTTCTTCTAGTTGACCTATATATTTTCGTTCGAGAAGCGACGTTTCCTGTTGCCCTGCTGCTGCTGCTGATGCTGTTGCTGATCCCTGAAGGGAATCCGGCTGGGCGAACAACGTCGTAGATTCTGTCCGTTGGGAGAATTGTATGCCTTGGTTTTTTGGGGGGATCGGTAGATTGTGACCTAAATCATGTCATGCCAGCTCGGGGGATGGGCGGATGCTTTTGTTCTTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATTAAA] [+] EMBL BX615031 [TTCGCTATGTCATTTTGCTTCCTCTGCTTCTAATCTGTAGCGGCAGTTTGGGGGACCCGGTTTTCGTTGCAAAAATGATACACACGGTGTACGAAACGGGCAAACCTGGTTGGATGGAAGAACACGGTTGGACAGCGAACCTGCGGCGTTGATTCCAATTATGACGCGATGAACTTATATAATTATGCAAATTAGCTCGCTTCTCCACCTTTCTTTCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGTCGCGCGGGATAAAGAAAGAGAGAGAGAGAGAGAAAAAGGGAGGGCATACAAAACGTAATCTTGTGATTTTGGATAACCAACCGTTTTCGGACGATGTGCGTCCAGGCGTTGTGGTTCGATCTTCTTCTAGTTGACCTATATATTTTCGTTCGAGAAGCGACGTTTCCTGTTGCCCTGCTGCTGCTGCTGATGCTGTTGCTGATCCCTGAAGGGAATCCGGCTGGGCGAACAACGTCGTAGATTCTGTCCGTTGGGAGAATTGTATGCCTTGGTTTTTTGGGGGGATCGGTAGATTGTGACCTAAATCATGTCATGCCAGCTCGGGGGATGGGCGGATGCTTTTGTTCTTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATTAAA] [+] EMBL CNS0953U [ GGATGGGCGGATGCTTTTCTTCTTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATTAA ] consensusID : consensus_4809#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence [AGCACGCTTCTCCACCGGTCTATCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGTAGCGAGGGATAAAGAAAGAGAGATAGAGAAAGGGAGGGCAAACAAAACGAAATCTTGGGAGTGGGGAAAACCAACCGGTGTCGGACGATGTGCGTCCAG] [-] EMBL CNS0953V [AGCACGCTTCTCCACCGGTCTATCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGTAGCGAGGGATAAAGAAAGAGAGATAGAGAAAGGGAGGGCAAACAAAACGAAATCTTGGGAGTGGGGAAAACCAACCGGTGTCGGACGATGTGCGTCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4809#0 TTCGCTATGTCATTTTGCTTCCTCTGCTTCTAATCTGTAGCGGCAGTTTGGGGGACCCGG 60 consensus_4809#1 ------------------------------------------------------------ consensus_4809#0 TTTTCGTTGCAAAAATGATACACACGGTGTACGAAACGGGCAAACCTGGTTGGATGGAAG 120 consensus_4809#1 ------------------------------------------------------------ consensus_4809#0 AACACGGTTGGACAGCGAACCTGCGGCGTTGATTCCAATTATGACGCGATGAACTTATAT 180 consensus_4809#1 ------------------------------------------------------------ consensus_4809#0 AATTATGCAAATTAGCTCGCTTCTCCACCTTTCTTTCTAGACGGAATCCCGAAAGACCAG 240 consensus_4809#1 -------------AGCACGCTTCTCCACCGGTCTATCTAGACGGAATCCCGAAAGACCAG 47 *** ************ *** ************************* consensus_4809#0 AACGAAGGGGAGTCGCGCGGGATAAAGAAAGAGAGAGAGAGAGAGAAAAAGGGAGGGCAT 300 consensus_4809#1 AACGAAGGGGAGTAGCGAGGGATAAAGAAAGAGAGATAGAGA------AAGGGAGGGCAA 101 ************* *** ****************** ***** *********** consensus_4809#0 ACAAAACGTAATCTTGTGATTTTGGATAACCAACCGTTTTCGGACGATGTGCGTCCAGGC 360 consensus_4809#1 ACAAAACGAAATCTTGGGAGTGGGGAAAACCAACCGGTGTCGGACGATGTGCGTCCAG-- 159 ******** ******* ** * *** ********* * ******************* consensus_4809#0 GTTGTGGTTCGATCTTCTTCTAGTTGACCTATATATTTTCGTTCGAGAAGCGACGTTTCC 420 consensus_4809#1 ------------------------------------------------------------ consensus_4809#0 TGTTGCCCTGCTGCTGCTGCTGATGCTGTTGCTGATCCCTGAAGGGAATCCGGCTGGGCG 480 consensus_4809#1 ------------------------------------------------------------ consensus_4809#0 AACAACGTCGTAGATTCTGTCCGTTGGGAGAATTGTATGCCTTGGTTTTTTGGGGGGATC 540 consensus_4809#1 ------------------------------------------------------------ consensus_4809#0 GGTAGATTGTGACCTAAATCATGTCATGCCAGCTCGGGGGATGGGCGGATGCTTTTGTTC 600 consensus_4809#1 ------------------------------------------------------------ consensus_4809#0 TTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATT 660 consensus_4809#1 ------------------------------------------------------------ consensus_4809#0 AAA 663 consensus_4809#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||