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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4809 cluster # 4809       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4809#0 length = 663 sequences # 2  
consensus_4809#1 length = 159 sequences # 1  

consensusID : consensus_4809#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 663
fasta sequence
                              [TTCGCTATGTCATTTTGCTTCCTCTGCTTCTAATCTGTAGCGGCAGTTTGGGGGACCCGGTTTTCGTTGCAAAAATGATACACACGGTGTACGAAACGGGCAAACCTGGTTGGATGGAAGAACACGGTTGGACAGCGAACCTGCGGCGTTGATTCCAATTATGACGCGATGAACTTATATAATTATGCAAATTAGCTCGCTTCTCCACCTTTCTTTCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGTCGCGCGGGATAAAGAAAGAGAGAGAGAGAGAGAAAAAGGGAGGGCATACAAAACGTAATCTTGTGATTTTGGATAACCAACCGTTTTCGGACGATGTGCGTCCAGGCGTTGTGGTTCGATCTTCTTCTAGTTGACCTATATATTTTCGTTCGAGAAGCGACGTTTCCTGTTGCCCTGCTGCTGCTGCTGATGCTGTTGCTGATCCCTGAAGGGAATCCGGCTGGGCGAACAACGTCGTAGATTCTGTCCGTTGGGAGAATTGTATGCCTTGGTTTTTTGGGGGGATCGGTAGATTGTGACCTAAATCATGTCATGCCAGCTCGGGGGATGGGCGGATGCTTTTGTTCTTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATTAAA]

[+] EMBL BX615031             [TTCGCTATGTCATTTTGCTTCCTCTGCTTCTAATCTGTAGCGGCAGTTTGGGGGACCCGGTTTTCGTTGCAAAAATGATACACACGGTGTACGAAACGGGCAAACCTGGTTGGATGGAAGAACACGGTTGGACAGCGAACCTGCGGCGTTGATTCCAATTATGACGCGATGAACTTATATAATTATGCAAATTAGCTCGCTTCTCCACCTTTCTTTCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGTCGCGCGGGATAAAGAAAGAGAGAGAGAGAGAGAAAAAGGGAGGGCATACAAAACGTAATCTTGTGATTTTGGATAACCAACCGTTTTCGGACGATGTGCGTCCAGGCGTTGTGGTTCGATCTTCTTCTAGTTGACCTATATATTTTCGTTCGAGAAGCGACGTTTCCTGTTGCCCTGCTGCTGCTGCTGATGCTGTTGCTGATCCCTGAAGGGAATCCGGCTGGGCGAACAACGTCGTAGATTCTGTCCGTTGGGAGAATTGTATGCCTTGGTTTTTTGGGGGGATCGGTAGATTGTGACCTAAATCATGTCATGCCAGCTCGGGGGATGGGCGGATGCTTTTGTTCTTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATTAAA]
[+] EMBL CNS0953U             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGATGGGCGGATGCTTTTCTTCTTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATTAA ]


>consensus_4809#0 TTCGCTATGTCATTTTGCTTCCTCTGCTTCTAATCTGTAGCGGCAGTTTGGGGGACCCGG TTTTCGTTGCAAAAATGATACACACGGTGTACGAAACGGGCAAACCTGGTTGGATGGAAG AACACGGTTGGACAGCGAACCTGCGGCGTTGATTCCAATTATGACGCGATGAACTTATAT AATTATGCAAATTAGCTCGCTTCTCCACCTTTCTTTCTAGACGGAATCCCGAAAGACCAG AACGAAGGGGAGTCGCGCGGGATAAAGAAAGAGAGAGAGAGAGAGAAAAAGGGAGGGCAT ACAAAACGTAATCTTGTGATTTTGGATAACCAACCGTTTTCGGACGATGTGCGTCCAGGC GTTGTGGTTCGATCTTCTTCTAGTTGACCTATATATTTTCGTTCGAGAAGCGACGTTTCC TGTTGCCCTGCTGCTGCTGCTGATGCTGTTGCTGATCCCTGAAGGGAATCCGGCTGGGCG AACAACGTCGTAGATTCTGTCCGTTGGGAGAATTGTATGCCTTGGTTTTTTGGGGGGATC GGTAGATTGTGACCTAAATCATGTCATGCCAGCTCGGGGGATGGGCGGATGCTTTTGTTC TTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATT AAA



consensusID : consensus_4809#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence
                              [AGCACGCTTCTCCACCGGTCTATCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGTAGCGAGGGATAAAGAAAGAGAGATAGAGAAAGGGAGGGCAAACAAAACGAAATCTTGGGAGTGGGGAAAACCAACCGGTGTCGGACGATGTGCGTCCAG]

[-] EMBL CNS0953V             [AGCACGCTTCTCCACCGGTCTATCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGTAGCGAGGGATAAAGAAAGAGAGATAGAGAAAGGGAGGGCAAACAAAACGAAATCTTGGGAGTGGGGAAAACCAACCGGTGTCGGACGATGTGCGTCCAG]


>consensus_4809#1 AGCACGCTTCTCCACCGGTCTATCTAGACGGAATCCCGAAAGACCAGAACGAAGGGGAGT AGCGAGGGATAAAGAAAGAGAGATAGAGAAAGGGAGGGCAAACAAAACGAAATCTTGGGA GTGGGGAAAACCAACCGGTGTCGGACGATGTGCGTCCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4809#0      TTCGCTATGTCATTTTGCTTCCTCTGCTTCTAATCTGTAGCGGCAGTTTGGGGGACCCGG 60
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      TTTTCGTTGCAAAAATGATACACACGGTGTACGAAACGGGCAAACCTGGTTGGATGGAAG 120
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      AACACGGTTGGACAGCGAACCTGCGGCGTTGATTCCAATTATGACGCGATGAACTTATAT 180
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      AATTATGCAAATTAGCTCGCTTCTCCACCTTTCTTTCTAGACGGAATCCCGAAAGACCAG 240
consensus_4809#1      -------------AGCACGCTTCTCCACCGGTCTATCTAGACGGAATCCCGAAAGACCAG 47
                                   *** ************  *** *************************

consensus_4809#0      AACGAAGGGGAGTCGCGCGGGATAAAGAAAGAGAGAGAGAGAGAGAAAAAGGGAGGGCAT 300
consensus_4809#1      AACGAAGGGGAGTAGCGAGGGATAAAGAAAGAGAGATAGAGA------AAGGGAGGGCAA 101
                      ************* *** ****************** *****      *********** 

consensus_4809#0      ACAAAACGTAATCTTGTGATTTTGGATAACCAACCGTTTTCGGACGATGTGCGTCCAGGC 360
consensus_4809#1      ACAAAACGAAATCTTGGGAGTGGGGAAAACCAACCGGTGTCGGACGATGTGCGTCCAG-- 159
                      ******** ******* ** *  *** ********* * *******************  

consensus_4809#0      GTTGTGGTTCGATCTTCTTCTAGTTGACCTATATATTTTCGTTCGAGAAGCGACGTTTCC 420
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      TGTTGCCCTGCTGCTGCTGCTGATGCTGTTGCTGATCCCTGAAGGGAATCCGGCTGGGCG 480
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      AACAACGTCGTAGATTCTGTCCGTTGGGAGAATTGTATGCCTTGGTTTTTTGGGGGGATC 540
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      GGTAGATTGTGACCTAAATCATGTCATGCCAGCTCGGGGGATGGGCGGATGCTTTTGTTC 600
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      TTTTTGTTTGTGGCCAATCTGTTTGCCGTTTCCTCCATATTTTTGCATTGGCAGCAGATT 660
consensus_4809#1      ------------------------------------------------------------
                                                                                  

consensus_4809#0      AAA 663
consensus_4809#1      ---
                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)