cluster # 4815

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Anopheles gambiae
cluster # 4815 cluster # 4815 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4815#0 length = 678 sequences # 1

consensus_4815#1 length = 672 sequences # 2

consensusID : consensus_4815#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence

                              [CACCACCAACAACACCACCAAAAAGCTGCCTTCACAAGCGAACGCATCCGTCCGCACGCGCACTCCTTCGCCCCGGGGAAGCATTGGCAACGGGTCCCTACCGAACGGCACGGTTCCGGGCAAGGGAACGGCCACCACGACGACGGCAGGCACAAAGCCGAAAACGGCCGCCAAACCAACGGCGGCCGCCATCGGCAATGGGAAGCTTCTGACGGCGGCCGCACGGCCCGGTCCGGGCAAAGTTTCCAACGTGGCGTCGCTGCAGCAAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCGGATGCAAGGACGCAAAGCAAAGCAAAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGGATTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAGTAGCTTTTAATTATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAGTTTTGCAGAGCGTTTTGAAGAATAGATTTTTTTTTGTAATATAACAATTATTTATACTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACCAATCAATTTGTTATATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTNAATCGGTTCCCAATGGACGGTTGTTTTTGCTTTGGCCTC]

[+] EMBL BX622698             [CACCACCAACAACACCACCAAAAAGCTGCCTTCACAAGCGAACGCATCCGTCCGCACGCGCACTCCTTCGCCCCGGGGAAGCATTGGCAACGGGTCCCTACCGAACGGCACGGTTCCGGGCAAGGGAACGGCCACCACGACGACGGCAGGCACAAAGCCGAAAACGGCCGCCAAACCAACGGCGGCCGCCATCGGCAATGGGAAGCTTCTGACGGCGGCCGCACGGCCCGGTCCGGGCAAAGTTTCCAACGTGGCGTCGCTGCAGCAAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCGGATGCAAGGACGCAAAGCAAAGCAAAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGGATTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAGTAGCTTTTAATTATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAGTTTTGCAGAGCGTTTTGAAGAATAGATTTTTTTTTGTAATATAACAATTATTTATACTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACCAATCAATTTGTTATATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTNAATCGGTTCCCAATGGACGGTTGTTTTTGCTTTGGCCTC]




>consensus_4815#0
CACCACCAACAACACCACCAAAAAGCTGCCTTCACAAGCGAACGCATCCGTCCGCACGCG
CACTCCTTCGCCCCGGGGAAGCATTGGCAACGGGTCCCTACCGAACGGCACGGTTCCGGG
CAAGGGAACGGCCACCACGACGACGGCAGGCACAAAGCCGAAAACGGCCGCCAAACCAAC
GGCGGCCGCCATCGGCAATGGGAAGCTTCTGACGGCGGCCGCACGGCCCGGTCCGGGCAA
AGTTTCCAACGTGGCGTCGCTGCAGCAAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCGG
ATGCAAGGACGCAAAGCAAAGCAAAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGGA
TTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAGT
AGCTTTTAATTATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAGT
TTTGCAGAGCGTTTTGAAGAATAGATTTTTTTTTGTAATATAACAATTATTTATACTTTG
CGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACCAATCAATTTGTTATATTA
ATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTNAATCGGTTCCCAATGGACGGT
TGTTTTTGCTTTGGCCTC

consensusID : consensus_4815#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 672
fasta sequence

                              [CCGCCCACGCGTCCGAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCGGATGCAAGGACGCAAAGCAAAGCAGAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGGATTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAGTAGCTTTTAATCATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAGTTTTGCAGAGCG-TTTTGACGAAAACGGCAAAGGCGAATAGATTTTTTCTTTTGTAATATAACAATTATTTATACTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACCAATCAATTTGTTATATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTGAATCGGTTCCCAATGGAGGGTTGTTTTGCTTGGCCTCCTTATCATAATGCAAAACTGAAGCGTGGCGTGTGTGTAAATGTATTGATGTGTTCAGTAAAGTGTGCTACGAAGGCGCCAAAGAAATGCAATCCAATCGGTGCACCGCAGCGAGGAGAAAGAAGGGCGAAATAGAACCTACGTAAAGAAATGTCGTCAAATAGGGTCAAATCTTAGTGAGTGTATTTAGTGGGATGGGATCTATTTTGTTAAAGATATGGTCATACAATCA]

[+] EMBL BM584068             [CCGCCCACGCGTCCGAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCGGATGCAAGGACGCAAAGCAAAGCAGAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGGATTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAGTAGCTTTTAATCATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAGTTTTGCAGAGCG TTTTGACGAAAACGGCAAAGGCGAATAGATTTTTTCTTTTGTAATATAACAATTATTTATACTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACCAATCAATTTGTTATATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTGAATCGGTTCCCAATGGAGGGTTGTTTTGCTTGGCCTCCTTATCATAATGCAAAACTGAAGCGTGGCGTGTGTGTAAATGTATTGATGTGTTCAGTAAAGTGTGCTACGAAGGCGCCAAAGAAATGCAATCCAATCGGTGCACCGCAGCGAGGAGAAAGAAGGGCGAAATAGAACCTACGTAAAGAAATGTCGTCAAATAGGGTCAAATCTTAGTGAGTGTATTTAGTGGGATGGGATCTATTTTGTTAAAGATATGGTCATACAATCA]
[+] EMBL BX625350             [                                                                                                    GCGAAGGATTCGGATGCTCT CCCCCAAGAACTGCCGCAAGAATGTTATGCTGAGCGCGTTAATCAGTAGCTTTTAATTATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAATAACTAGNTTTGCAGAGCGTTTTTGAAGAAAACGGCAAAGGCGAAT                                                                                                                                                                                                                                                                                                                                                                                                                       ]




>consensus_4815#1
CCGCCCACGCGTCCGAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCGGATGCAAGGACGC
AAAGCAAAGCAGAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGGATTCGGATGCTCT
CCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAGTAGCTTTTAATCA
TGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAGTTTTGCAGAGCGT
TTTGACGAAAACGGCAAAGGCGAATAGATTTTTTCTTTTGTAATATAACAATTATTTATA
CTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACCAATCAATTTGTTA
TATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTGAATCGGTTCCCAATGG
AGGGTTGTTTTGCTTGGCCTCCTTATCATAATGCAAAACTGAAGCGTGGCGTGTGTGTAA
ATGTATTGATGTGTTCAGTAAAGTGTGCTACGAAGGCGCCAAAGAAATGCAATCCAATCG
GTGCACCGCAGCGAGGAGAAAGAAGGGCGAAATAGAACCTACGTAAAGAAATGTCGTCAA
ATAGGGTCAAATCTTAGTGAGTGTATTTAGTGGGATGGGATCTATTTTGTTAAAGATATG
GTCATACAATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4815#0      CACCACCAACAACACCACCAAAAAGCTGCCTTCACAAGCGAACGCATCCGTCCGCACGCG 60
consensus_4815#1      ------------------------------------------------------------
                                                                                  

consensus_4815#0      CACTCCTTCGCCCCGGGGAAGCATTGGCAACGGGTCCCTACCGAACGGCACGGTTCCGGG 120
consensus_4815#1      ------------------------------------------------------------
                                                                                  

consensus_4815#0      CAAGGGAACGGCCACCACGACGACGGCAGGCACAAAGCCGAAAACGGCCGCCAAACCAAC 180
consensus_4815#1      ------------------------------------------------------------
                                                                                  

consensus_4815#0      GGCGGCCGCCATCGGCAATGGGAAGCTTCTGACGGCGGCCGCACGGCCCGGTCCGGGCAA 240
consensus_4815#1      ------------------------------------------------------------
                                                                                  

consensus_4815#0      AGTTTCCAACGTGGCGTCGCTGCAGC-AAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCG 299
consensus_4815#1      -------------CCGCCCACGCGTCCGAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCG 47
                                    ** *   **  *  ********************************

consensus_4815#0      GATGCAAGGACGCAAAGCAAAGCAAAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGG 359
consensus_4815#1      GATGCAAGGACGCAAAGCAAAGCAGAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGG 107
                      ************************ ***********************************

consensus_4815#0      ATTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAG 419
consensus_4815#1      ATTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAG 167
                      ************************************************************

consensus_4815#0      TAGCTTTTAATTATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAG 479
consensus_4815#1      TAGCTTTTAATCATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAG 227
                      *********** ************************************************

consensus_4815#0      TTTTGCAGAGCGTTTTGAAGAA---------------TAGATTTTTT--TTTGTAATATA 522
consensus_4815#1      TTTTGCAGAGCGTTTTGACGAAAACGGCAAAGGCGAATAGATTTTTTCTTTTGTAATATA 287
                      ****************** ***               **********  ***********

consensus_4815#0      ACAATTATTTATACTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACC 582
consensus_4815#1      ACAATTATTTATACTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACC 347
                      ************************************************************

consensus_4815#0      AATCAATTTGTTATATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTNAAT 642
consensus_4815#1      AATCAATTTGTTATATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTGAAT 407
                      ******************************************************** ***

consensus_4815#0      CGGTTCCCAATGGACGGTTGTTTTTGCTTTGGCCTC------------------------ 678
consensus_4815#1      CGGTTCCCAATGGAGGGTTGTTTTG--CTTGGCCTCCTTATCATAATGCAAAACTGAAGC 465
                      ************** *********    ********                        

consensus_4815#0      ------------------------------------------------------------
consensus_4815#1      GTGGCGTGTGTGTAAATGTATTGATGTGTTCAGTAAAGTGTGCTACGAAGGCGCCAAAGA 525
                                                                                  

consensus_4815#0      ------------------------------------------------------------
consensus_4815#1      AATGCAATCCAATCGGTGCACCGCAGCGAGGAGAAAGAAGGGCGAAATAGAACCTACGTA 585
                                                                                  

consensus_4815#0      ------------------------------------------------------------
consensus_4815#1      AAGAAATGTCGTCAAATAGGGTCAAATCTTAGTGAGTGTATTTAGTGGGATGGGATCTAT 645
                                                                                  

consensus_4815#0      ---------------------------
consensus_4815#1      TTTGTTAAAGATATGGTCATACAATCA 672