These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4821#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1007 fasta sequence [CCGCTTATCGAGCGGTGCAAGTTCGGTGTGGCATGTTAAAATCTCTCTGTTCTCTCTCTCTCTCTCTTTGTGCGTATCGCTCCCTGTGTTCTACGAAGTAGACTTGTTTTATTGCTTTATGTAATGTGCACAAACATTGACCTCCTTTGCGCTTGCAACTCATCTTCACGGAGCAGCCAGGCAGGTGTCTTAACACATTCGCAAACGAAATGCTACACACCGCTTGAAGGAAGATAACGAACATCCGAAGGTCCGTAGACGCATCTCGCTCGTCACGCGTCACTTGCTGACCACTTGCTGCTACTCCCACACACACACTGGATGGTATTGGCGAGCGACTTAGTATAACCGGGAACCGAGCACGAGCTGTAATGCTTCCATCGAACGGATCCGAACCGGCCGGGCCCGTTGGCCAGAATGAGGCCAAACTGTTGGCGATCG-TAGTGCTCGGGTTCGGCAGCTTCCTGTGCGGCGTGCTGCCGATCTACATATCCCAGCGCAACCGGCAACGCTACCCGGGCACGCTCTCCTTTCTGCTCTGTCTCGG-GGCGGGCGTCCTGCTGGCCACGGCCATCGTGCACATGCTGCCGGAGATACGCGAAGCGCTCGGCGAGTACGCGGAGATTGTGTTTTGCAGTGGCTTTTTCCTCATGTACGCCATCGACGAGCTGGTAGAGTTTTGCGGCATCGCTGGACACGATCATGGAGAGGATGGAGAGGGTGATCGGCGGGCGGAACAGGACAGGCGGTATGGGGAAGACTCGGACGCGGCAAGCACTTCGAGCCGCCGGGAGCGGCGGTACGGTGCGAACGAGGAAACAAAATCGCTTCTCGGCAGCGGCAATGACTCCGAAGTGACCGCCTCCCGACGATCGCTGGAAAGTGTGGTGGGGTTGGGCGGCAATCTATCCCGCCGCTCGTCGCTGAATGGACCGCCGCCCGCGGGAAGGGGACAACAATCGGGACAAAGTGCTGCCGAGCTGCAGCTGACCGGTGTGTTCGGGCTG] [+] EMBL BM655968 [CCGCTTATCGAGCGGTGCAAGTTCGGTGTGGCATGTTAAAATCTCTCTGTTCTCTCTCTCTCTCTCTTTGTGCGTATCGCTCCCTGTGTTCTACGAAGTAGACTTGTTTTATTGCTTTATGTAATGTGCACAAACATTGACCTCCTTTGCGCTTGCAACTCATCTTCACGGAGCAGCCAGGCAGGTGTCTTAACACATTCGCAAACGAAATGCTACACACCGCTTGAAGGAAGATAACGAACATCCGAAGGTCCGTAGACGCATCTCGCTCGTCACGCGTCACTTGCTGACCACTTGCTGCTACTCCCACACACACACTGGATGGTATTGGCGAGCGACTTAGTATAACCGGGAACCGAGCACGAGCTGTAATGCTTCCATCGAACGGATCCGAACCGGCCGGGCCCGTTGGCCAGAATGAGGCCAAACTGTTGGCGATCG TAGTGCTCGGGTTCGGCAGCTTCCTGTGCGGCGTGCTGCCGATCTACATATCCCAGCGCAACCGGCAACGCTACCCGGGCACGCTCTCCTTTCTGCTCTGTCTCGG GGCGGGCGTCCTGCTGGCCACGGCCATCGTGCACATGCTGCCGGAGATACGCGAAGCGCTCGGCGAGTACGCGGAGATTGTGTTTTGCAGTGGCTTTTTCCTCATGTACG ] [+] EMBL CNS094TB [ TCCATCGAACGGATCCAAACCAGCCGGGCCCGTTGGCCAGAATGAGGCCAAACTGTTGGCGATCGCTAGTGCTCGGATTCGGCAGCTTCCTGTGCGGCGTACTGCCGATCTACATATCCCAGCGCAACCGGCAACGCTACCCGGGCACCCTCTCCTTTCTGCTCTGTCTAGGCAGCGGGCGTCCTGCTGGCCACCGCCATCGTGCACATGCTGCCGGAGATACGCGAA GCTCGGCGAGTACGCGGAGATTGTGTTTTGCAGTGGCTTTTTCCTCATGTACGCCATCGACGAGCTGGTAGAGTTTTGCGGCATCGCTGGACACGATCATGGAGAGGATGGAGAGGGTGATCGGCGGGCGGAACAGGACAGGCGGTATGGGGAAGACTCGGACGCGGCAAGCACTTCGAGCCGCCGGGAGCGGCGGTACGGTGCGAACGAGGAAACAAAATCGCTTCTCGGCAGCGGCAATGACTCCGAAGTGACCGCCTCCCGACGATCGCTGGAAAGTGTGGTGGGGTTGGGCGGCAATCTATCCCGCCGCTCGTCGCTGAATGGACCGCCGCCCGCGGGAAGGGGACAACAATCGGGACAAAGTGCTGCCGAGCTGCAGCTGACCGGTGTGTTCGGGCTG] consensusID : consensus_4821#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CGACCCACGCGTCCGCGATTACAGCGTGCGCGCGCTATCGCCGTTCGATTAGTTGAGCCAAAAGTTGAAAAAACAAATCAAGTGTAAAATAATAGCAACAAAAAACACACTTTTTTGTACCTAAAACACCGTTTCAATGTTGAAAAAGTGTATCATGCAGTGTGCTACTTATTTTTTTTTGCAACAGTGAGTCACGTTCCTGCAGTAGTACCATCGCAGGTTTACGTTCCGTTCTCACGGCCGTTAAATGGTTGCACAAACACCGTTGGTCTGTTTTTGAACTTCCTGGGCTCCTGCTGGATGGACAATGTTTGCGGAGCGTTTGTTATCGTACATGTTAACACTCTAAACAGCAACAAAACATGTAGAGTCGATTTCGAACCGAGCGACCGAAACCCGACCCTGAGGAGCAGCCAGGCAGGTGTCTTTACACATTTGCAAACGAAATGCTACACAACGCTTGAAGGAAGATAACGAACATCCGAAGGTCCGCAGACGCATCTCGCTCGTCACGCGTCACTTGCTGACCAGTTGCTGCTACTCACACACACACACGCTGGATGGTGTTGGCGAGCGACTTAGTATAACCGGGAACCGAGCACG] [+] EMBL BM639737 [CGACCCACGCGTCCGCGATTACAGCGTGCGCGCGCTATCGCCGTTCGATTAGTTGAGCCAAAAGTTGAAAAAACAAATCAAGTGTAAAATAATAGCAACAAAAAACACACTTTTTTGTACCTAAAACACCGTTTCAATGTTGAAAAAGTGTATCATGCAGTGTGCTACTTATTTTTTTTTGCAACAGTGAGTCACGTTCCTGCAGTAGTACCATCGCAGGTTTACGTTCCGTTCTCACGGCCGTTAAATGGTTGCACAAACACCGTTGGTCTGTTTTTGAACTTCCTGGGCTCCTGCTGGATGGACAATGTTTGCGGAGCGTTTGTTATCGTACATGTTAACACTCTAAACAGCAACAAAACATGTAGAGTCGATTTCGAACCGAGCGACCGAAACCCGACCCTGAGGAGCAGCCAGGCAGGTGTCTTTACACATTTGCAAACGAAATGCTACACAACGCTTGAAGGAAGATAACGAACATCCGAAGGTCCGCAGACGCATCTCGCTCGTCACGCGTCACTTGCTGACCAGTTGCTGCTACTCACACACACACACGCTGGATGGTGTTGGCGAGCGACTTAGTATAACCGGGAACCGAGCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4821#0 CCGCTTATCGAGCGGTGCAAGTTCGGTGTGGCATGTTAAAATCTCTCTGTTCTCTCTCTC 60 consensus_4821#1 ------------------------------------------------------------ consensus_4821#0 TCTCTCTTTGTGCGTATCGCTCCCTGTGTTCTACGAAGTAGACTTGTTTTATTGCTTTAT 120 consensus_4821#1 ------------------------------------------------------------ consensus_4821#0 GTAATGTGCACAAACATTGACCTCCTTTGCGCTTGCAACTCATCTTCACGGAGCAGCCAG 180 consensus_4821#1 ------------------------------------------------------------ consensus_4821#0 GCAGGTGTCTTAACACATTCGCAAACGAAATGCTACACACCGCTTGAAGGAAGATAACGA 240 consensus_4821#1 ------------------------------------------------------------ consensus_4821#0 ACATCCGAAGGTCCGTAGACGCATCTCGCTCGTCACGCGTCACTTGCTGACCACTTG-CT 299 consensus_4821#1 ----------------------------------------------CGACCCACGCGTCC 14 * **** * * consensus_4821#0 GCTACTCCCACACACACACTGGATGGTATTGGCGAGCGACTTAGTATAACCGGGAACCGA 359 consensus_4821#1 GCGATTACAGCGTGCGCGC-----GCTATCGCCGTTCGA-TTAGTTGAGCCAAAAGTTGA 68 ** * * * * * * * * *** * ** *** ***** * ** * ** consensus_4821#0 GCACGAGCTGTAATGCTTCCATCGAACGGATCCGAACCGGCCGGGCCCGTTGGCCAGAAT 419 consensus_4821#1 A-AAAACAAATCAAGTGTAAAATAATAGCAACAAAAAACACACTTTTTTGTACCTAAAAC 127 * * * * * * * * * * * ** * * * * ** consensus_4821#0 GAGGCCAAACTGTTGGCGATCGTAGTGCTCGGGTTCGGCAGCTTCCTGTGCGGCGTGCTG 479 consensus_4821#1 ACCGTTTCAATGTTGAAAA--------------------AGTGTATCATGCAGTGTGCTA 167 * * ***** * ** * *** * ***** consensus_4821#0 CCGATCTACATATCCCAGCGCAACCGGCAACGCTACCCGGGCACGCTCTCC--TTTCTGC 537 consensus_4821#1 CTTATTTTTTTTTGCAACAGTGAGTCACGTTCCTGCAGTAGTACCATCGCAGGTTTACGT 227 * ** * * * * * * * * ** * * ** ** * *** * consensus_4821#0 TCTGT-CTCGGGGCGGGCGTCCTGCTGGCCACGGCCATCGTGCACATGCTGCCGGAGATA 596 consensus_4821#1 TCCGTTCTCACGGCCGTTAAATGGTTG--CACAAACACCGTTGGTCTGTTTTTGAACTTC 285 ** ** *** *** * * ** *** ** *** ** * * * * consensus_4821#0 CGCGAAGCGCTCGGCGAGTACGCGGAGATTGTGTTTTGCAGTGGCTTTTTCCTCATGTAC 656 consensus_4821#1 CTGG--GCTCCTGCTGGAT----GGACAATGT---TTGCGGAGCGTTTGTTATCGTACAT 336 * * ** * * * * *** * *** **** * * *** * ** * * consensus_4821#0 GCCATCGACGAGCTGGTAGAGTTTTGCGGCATCGCTGGACACGATCATGGAGAGGATGG- 715 consensus_4821#1 G---TTAACACTCTAA-ACAGCAACAAAACAT--GTAGAGTCGATTTCGAACCGAGCGAC 390 * * ** ** * ** *** * ** **** * * * * consensus_4821#0 -AGAGGGTGATCGGCGGGCGGAACAGGACAGGCGGTATGGGGAAGACTCGGACGCGGCAA 774 consensus_4821#1 CGAAACCCGACCCTGAGGAGCAGCCAGGCAGGTGTCTTTACACATTTGCAAACG----AA 446 * ** * ** * * * * **** * * * * *** ** consensus_4821#0 GCACTTCGAGCCGCCGGGAGCGGCGGTACGGTGCGAACGAGGAAACAAAATCGCTTCTCG 834 consensus_4821#1 ATGCTACACAACGCTTGAAG-GAAGATAACGAACATCCGAAGGTCCGCAGACGCATCTCG 505 ** * *** * ** * * ** * * *** * * * *** ***** consensus_4821#0 GCAGCGGCAATGACTCCGAAGTGACCGCCTCCCGACGATCGCTGGAAAGTGTGGTGGGGT 894 consensus_4821#1 CT--CGTCACGCGTCACTTGCTGACCAGTTGCTGCTACTCACACACACACACGCTGGATG 563 ** ** * ***** * * * ** * * * *** consensus_4821#0 TGGGCGGCAATCTATCCCGCCGCTCGTCGCTGAATGGACCGCCGCCCGCGGGAAGGGGAC 954 consensus_4821#1 GTGTTGGCGAGCGACTTAGT--ATAACCGG-GAACCGAGCACG----------------- 603 * *** * * * * * ** *** ** * * consensus_4821#0 AACAATCGGGACAAAGTGCTGCCGAGCTGCAGCTGACCGGTGTGTTCGGGCTG 1007 consensus_4821#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||