These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [GGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAAAGCAGCCCGCTGCATTGATGCTGCGAGTGCAGAAAACAAAACTGAAATCAGATTTCCGATCCAATTTGCAAATTTGCAGTAGAAAAGTGTAAGCGCGCCGAGGCCGGTTTGAGTAAGAGTAGACACAGGAACACAAGAAAATGTTTGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAATTTAGCAAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAACCGGAAGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGAACGCAAAACACTATGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTGGCAGATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAACAAGTCTGGCATTGGAACTGGGACAAAGTGTATGGAAAAAAGAATTCGTGATCAATGC] [+] EMBL BX615481 [GGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAAAGCAGCCCGCTGCATTGATGCTGCGAGTGCAGAAAACAAAACTGAAATCAGATTTCCGATCCAATTTGCAAATTTGCAGTAGAAAAGTGTAAGCGCGCCGAGGCCGGTTTGAGTAAGAGTAGACACAGGAACACAAGAAAATGTTTGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAATTTAGCAAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAACCGGAAGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGAACGCAAAACACTATGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTGGCAGATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAACAAGTCTGGCATTGGAACTGGGACAAAGTGTATGGAAAAAAGAATTCGTGATCAATGC] consensusID : consensus_4834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [AAGAATCGGCACGTGGTGGAACTGGGACAAAGTGTATCGGAAAAAAAGAGAAGAAAATATGGCAGTGTCTGGATGGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACATAATACGTTAGCGTTTACAGTACCATAGCTCAACAAAACAATACAAAAAGCAGCCCGCTGCATTGATGCTGCGAGTGCAGAAAACAAAACTGAAAGTCAGATTTCCGATCCAAGTTTGCAAAGTTTGCGAGTAGGAAAAGTGTATGTGTGGTGTGAGGGGTAACTGAGGTAANAGTANAGCAAAGACATAAGACATAAAGCACACACACACACAAGCACACAACACNANCNATGGCNCAGAGNCCCGATGAACGGTGNAAACCGANGAGCAGCAACGGAA] [+] EMBL BX468096 [AAGAATCGGCACGTGGTGGAACTGGGACAAAGTGTATCGGAAAAAAAGAGAAGAAAATATGGCAGTGTCTGGATGGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACATAATACGTTAGCGTTTACAGTACCATAGCTCAACAAAACAATACAAAAAGCAGCCCGCTGCATTGATGCTGCGAGTGCAGAAAACAAAACTGAAAGTCAGATTTCCGATCCAAGTTTGCAAAGTTTGCGAGTAGGAAAAGTGTATGTGTGGTGTGAGGGGTAACTGAGGTAANAGTANAGCAAAGACATAAGACATAAAGCACACACACACACAAGCACACAACACNANCNATGGCNCAGAGNCCCGATGAACGGTGNAAACCGANGAGCAGCAACGGAA] consensusID : consensus_4834#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [TGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAATTTAGCAAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAACCGTAAGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGAACGCAAAACACTATGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTGGCAGATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAACAAGTCTGGCATTGGAACTGGGACAAAGTGTATGGAAAAAAAGAGAAGAAAATATGGCAGTGTCTGGATGGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAT] [+] EMBL BX614193 [TGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAATTTAGCAAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAACCGTAAGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGAACGCAAAACACTATGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTGGCAGATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAACAAGTCTGGCATTGGAACTGGGACAAAGTGTATGGAAAAAAAGAGAAGAAAATATGGCAGTGTCTGGATGGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4834#0 GGGGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACAT 60 consensus_4834#2 ------------------------------------------------------------ consensus_4834#1 ------------------------------------------------------------ consensus_4834#0 AGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAAAGCAGCCCG 120 consensus_4834#2 ------------------------------------------------------------ consensus_4834#1 ------------------------------------------------------------ consensus_4834#0 CTGCATTGATGCTGCGAGTGCAGAAAACAAAACTGAAATCAGATTTCCGATCCAATTTGC 180 consensus_4834#2 ------------------------------------------------------------ consensus_4834#1 ------------------------------------------------------------ consensus_4834#0 AAATTTGCAGTAGAAAAGTGTAAGCGCGCCGAGGCCGGTTTGAGTAAGAGTAGACACAGG 240 consensus_4834#2 ------------------------------------------------------------ consensus_4834#1 -------------------------------------------------AAGAATCGGCA 11 consensus_4834#0 AACACAAGAAAATGTTTGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAAT-TTAG 299 consensus_4834#2 ----------------TGAGCCGTCTGGGAAAAGCAATGTAGAAAGTGGAACAAT-TTAG 43 consensus_4834#1 CGTGGTGGAACTGGGACAAAGTGTATCGGAAAAAAAGAGAAGAAAATATGGCAGTGTCTG 71 * ** * ****** * * ***** * ** * * * consensus_4834#0 CAAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAAC 359 consensus_4834#2 CAAACAGAAGAAAAAGAAAAGGGAAATTCTCTAGAAATCATTTTAAAAAAAACATGCAAC 103 consensus_4834#1 GATGGGGACGAGCAATATAAAACACACACTATATCAA--AGCTCGAACAAATGACGCGAG 129 * ** ** ** * ** * * ** ** ** * * ** *** * ** * consensus_4834#0 CGGA-AGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGA-ACGCAAAA 417 consensus_4834#2 CGTA-AGTACGAAAGCAGATAACAATCATTCGAAAATGGGGCGACAACAGA-ACGCAAAA 161 consensus_4834#1 CACATAGTGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACATAATA 189 * * *** * * * ** * ** * ** ** ** ** * consensus_4834#0 CACTA-TGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTG 476 consensus_4834#2 CACTA-TGCGCAAAGCAGAGACGTCGAACAAGACGCAAACGGACATTAGAGGCAAACGTG 220 consensus_4834#1 CGTTAGCGTTTACAGTACCATAGCTCAACAAAACA-ATACAAAAAGCAGCCCGCTGCATT 248 * ** * * ** * * ***** ** * ** * * ** * * consensus_4834#0 GCAGATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAA--CAAGTCTGGCA--- 531 consensus_4834#2 GCAGATTCGGCTAGGGCGGACGGTAGTAAATTGTATAAAAACAA--CAAGTCTGGCA--- 275 consensus_4834#1 GATGCTGCGAGTGCAGAAAACAAAACTGAAAGTCAGATTTCCGATCCAAGTTTGCAAAGT 308 * * * ** * * ** * * ** * * * * ***** ** * consensus_4834#0 TTGGAACTGGGACAAAGTGTATGGAAAAAAGAATTCGTGATCAATGC------------- 578 consensus_4834#2 TTGGAACTGGGACAAAGTGTATGGAAAAAAAGAGAAGAAAATATGGCAGTGTCTGGATGG 335 consensus_4834#1 TTGCGAGTAGGA-AAAGTGTATGTGTGGTGTGAGGGGTAACTGAGGTAANAGTANAGCAA 367 *** * * *** ********** * * * * consensus_4834#0 ------------------------------------------------------------ consensus_4834#2 GGACGAGCAATATAAAACACACACTATATCAAAGCTCGAACAAATGACGCGAGCACATAG 395 consensus_4834#1 AGACATAAGACATAAAGCACACAC-ACACACAAGCACACAACACNANCNATGGCNCAGAG 426 consensus_4834#0 ------------------------------------------------- consensus_4834#2 TGAGTTGGTTGGGTTTAAGGTGAATTACATCAATTGGGAAAGGATACAT 444 consensus_4834#1 NCCCGATGAACGGTGNAAACCGANGAGCAGCAACGGAA----------- 464 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||