These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CAGAATCCCCACGAGTCAGAAAAAAGCAAAAAGGAAAGGAAAGCAGAAAAACGGGATAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCACCACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGCGGTGGGCCGATACAGCGATGCGATTACCACATCAAGGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAGGAAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCCGCACGGTACGCGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGGCCGCAATCGCCCACCGGCACAATGCGAAGCAGGAGATGGACGAGGACCTGCGCTGCTTCGCGAACCGGCATCGAGGTGTGCAAGGCGGCTCGAACTTTCAACAAGAAACGGGCACAGACGAGCGAGGATACTGGTACGGCCCGGGCCGGGGTACCCTGTCCCGGG] [+] EMBL BX467298 [CAGAATCCCCACGAGTCAGAAAAAAGCAAAAAGGAAAGGAAAGCAGAAAAACGGGATAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCACCACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGCGGTGGGCCGATACAGCGATGCGATTACCACATCAAGGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAGGAAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCCGCACGGTACGCGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGGCCGCAATCGCCCACCGGCACAATGCGAAGCAGGAGATGGACGAGGACCTGCGCTGCTTCGCGAACCGGCATCGAGGTGTGCAAGGCGGCTCGAACTTTCAACAAGAAACGGGCACAGACGAGCGAGGATACTGGTACGGCCCGGGCCGGGGTACCCTGTCCCGGG] consensusID : consensus_4836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [CCGACAAAAACGGAAAACCCAGAAAAAAGCAAAAAAGGAAAGGAAAGCAGAAAAACGGGATAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCACCACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGTGGTGGGCCGATACAGCGATGCGATGACCACATCAAGGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGAATATTCGGGCAGGAAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCCGCACGGTACGCGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGGCCGCAATCGCCCACCGGCACAATGCGAAGCAGGAGATGGACGAGGATCTGCGCTGCTTTGCGACCGGCATCGAGGTGTGC] [+] EMBL BM584268 [CCGACAAAAACGGAAAACCCAGAAAAAAGCAAAAAAGGAAAGGAAAGCAGAAAAACGGGATAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCACCACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGTGGTGGGCCGATACAGCGATGCGATGACCACATCAAGGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGAATATTCGGGCAGGAAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCCGCACGGTACGCGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGGCCGCAATCGCCCACCGGCACAATGCGAAGCAGGAGATGGACGAGGATCTGCGCTGCTTTGCGACCGGCATCGAGGTGTGC] consensusID : consensus_4836#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [ATCGCCCCGAGGCTATACTTTGCCATCCGTTTCGGATTACGGCGGTGGGCCGATACAGCGATGCGATGACCACATCAAGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACCAAACCGGACGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAGGAAGCGTTACAATACGCGAAGCAGTACATATGAATGCCAAAGCACTGGCCTGCGCGGTACGCGGCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGTGCGCAATCGCCCACCGGCACAATGCGAAGCAGTGAGATGGACGAGTGACCTGCGCTGCTTCGCGACGGGATCGAGGTGTGCAAGCGGTCGACTTCAACAAGAACGGAGGA] [+] EMBL AL930246 [ATCGCCCCGAGGCTATACTTTGCCATCCGTTTCGGATTACGGCGGTGGGCCGATACAGCGATGCGATGACCACATCAAGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACCAAACCGGACGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAGGAAGCGTTACAATACGCGAAGCAGTACATATGAATGCCAAAGCACTGGCCTGCGCGGTACGCGGCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGTGCGCAATCGCCCACCGGCACAATGCGAAGCAGTGAGATGGACGAGTGACCTGCGCTGCTTCGCGACGGGATCGAGGTGTGCAAGCGGTCGACTTCAACAAGAACGGAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4836#0 ----CAGAATCCCCACGAGTCAGAAAAAAGCAAAAA-GGAAAGGAAAGCAGAAAAACGGG 55 consensus_4836#1 CCGACAAAAACGG-AAAACCCAGAAAAAAGCAAAAAAGGAAAGGAAAGCAGAAAAACGGG 59 consensus_4836#2 ------------------------------------------------------------ consensus_4836#0 ATAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCAC 115 consensus_4836#1 ATAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCAC 119 consensus_4836#2 ------------------------------------------------------------ consensus_4836#0 CACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGC 175 consensus_4836#1 CACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGT 179 consensus_4836#2 ------------ATCGCCCCGAG---GCTATACTTTGCCA-TCCGTTTC-GGATTACGGC 43 ** * * * ** *********** ******** ********* consensus_4836#0 GGTGGGCCGATACAGCGATGCGATTACCACATCAAGGGACTGATCCAGTCGTACGTGAAT 235 consensus_4836#1 GGTGGGCCGATACAGCGATGCGATGACCACATCAAGGGACTGATCCAGTCGTACGTGAAT 239 consensus_4836#2 GGTGGGCCGATACAGCGATGCGATGACCACATCAAGG-ACTGATCCAGTCGTACGTGAAT 102 ************************ ************ ********************** consensus_4836#0 CTGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTG 295 consensus_4836#1 CTGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTG 299 consensus_4836#2 CTGATCGTGGAAAATACCAAACCGGAC-GTAACACCGACCAGCGTGGTGATTTGTACGTG 161 *************************** ******************************** consensus_4836#0 GGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAG 355 consensus_4836#1 GGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGAATATTCGGGCAG 359 consensus_4836#2 GGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAG 221 *********************************************** ************ consensus_4836#0 GAAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCC-GCACGGTA 414 consensus_4836#1 GAAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCC-GCACGGTA 418 consensus_4836#2 GAAGCGTTACAATACGCGAAGCAGTACATA-TGAATGCCAAAGCACTGGCCTGCGCGGTA 280 *********** ****************** ******************** ** ***** consensus_4836#0 CGCGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGT 474 consensus_4836#1 CGCGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGT 478 consensus_4836#2 CGCGGCC-GACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGT 339 ******* **************************************************** consensus_4836#0 GTCGGCCGCAATCGCCCACCGGCACAATGCGAAGCAG-GAGATGGACGAG-GACCTGCGC 532 consensus_4836#1 GTCGGCCGCAATCGCCCACCGGCACAATGCGAAGCAG-GAGATGGACGAG-GATCTGCGC 536 consensus_4836#2 GTCGTGCGCAATCGCCCACCGGCACAATGCGAAGCAGTGAGATGGACGAGTGACCTGCGC 399 **** ******************************* ************ ** ****** consensus_4836#0 TGCTTCGCGAACCGGCATCGAGGTGTGCAAGGCGGCTCGAACTTTCAACAAGAAACGGGC 592 consensus_4836#1 TGCTTTGCGA-CCGGCATCGAGGTGTGC-------------------------------- 563 consensus_4836#2 TGCTTCGCGA--CGGGATCGAGGTGTGCAAGCGGTCGACTTCAACAAGAACGGAGGA--- 454 ***** **** *** ************ consensus_4836#0 ACAGACGAGCGAGGATACTGGTACGGCCCGGGCCGGGGTACCCTGTCCCGGG 644 consensus_4836#1 ---------------------------------------------------- consensus_4836#2 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||