cluster # 4836

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Anopheles gambiae
cluster # 4836 cluster # 4836 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4836#0 length = 644 sequences # 1

consensus_4836#1 length = 563 sequences # 1
consensus_4836#2 length = 454 sequences # 1

consensusID : consensus_4836#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CAGAATCCCCACGAGTCAGAAAAAAGCAAAAAGGAAAGGAAAGCAGAAAAACGGGATAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCACCACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGCGGTGGGCCGATACAGCGATGCGATTACCACATCAAGGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAGGAAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCCGCACGGTACGCGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGGCCGCAATCGCCCACCGGCACAATGCGAAGCAGGAGATGGACGAGGACCTGCGCTGCTTCGCGAACCGGCATCGAGGTGTGCAAGGCGGCTCGAACTTTCAACAAGAAACGGGCACAGACGAGCGAGGATACTGGTACGGCCCGGGCCGGGGTACCCTGTCCCGGG]

[+] EMBL BX467298             [CAGAATCCCCACGAGTCAGAAAAAAGCAAAAAGGAAAGGAAAGCAGAAAAACGGGATAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCACCACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGCGGTGGGCCGATACAGCGATGCGATTACCACATCAAGGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAGGAAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCCGCACGGTACGCGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGGCCGCAATCGCCCACCGGCACAATGCGAAGCAGGAGATGGACGAGGACCTGCGCTGCTTCGCGAACCGGCATCGAGGTGTGCAAGGCGGCTCGAACTTTCAACAAGAAACGGGCACAGACGAGCGAGGATACTGGTACGGCCCGGGCCGGGGTACCCTGTCCCGGG]




>consensus_4836#0
CAGAATCCCCACGAGTCAGAAAAAAGCAAAAAGGAAAGGAAAGCAGAAAAACGGGATAAA
CGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCACCACCC
CCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGCGGTGG
GCCGATACAGCGATGCGATTACCACATCAAGGGACTGATCCAGTCGTACGTGAATCTGAT
CGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGA
TGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAGGAAGC
GTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCCGCACGGTACGCGGC
CCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGGC
CGCAATCGCCCACCGGCACAATGCGAAGCAGGAGATGGACGAGGACCTGCGCTGCTTCGC
GAACCGGCATCGAGGTGTGCAAGGCGGCTCGAACTTTCAACAAGAAACGGGCACAGACGA
GCGAGGATACTGGTACGGCCCGGGCCGGGGTACCCTGTCCCGGG

consensusID : consensus_4836#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [CCGACAAAAACGGAAAACCCAGAAAAAAGCAAAAAAGGAAAGGAAAGCAGAAAAACGGGATAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCACCACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGTGGTGGGCCGATACAGCGATGCGATGACCACATCAAGGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGAATATTCGGGCAGGAAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCCGCACGGTACGCGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGGCCGCAATCGCCCACCGGCACAATGCGAAGCAGGAGATGGACGAGGATCTGCGCTGCTTTGCGACCGGCATCGAGGTGTGC]

[+] EMBL BM584268             [CCGACAAAAACGGAAAACCCAGAAAAAAGCAAAAAAGGAAAGGAAAGCAGAAAAACGGGATAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCACCACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGTGGTGGGCCGATACAGCGATGCGATGACCACATCAAGGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGAATATTCGGGCAGGAAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCCGCACGGTACGCGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGGCCGCAATCGCCCACCGGCACAATGCGAAGCAGGAGATGGACGAGGATCTGCGCTGCTTTGCGACCGGCATCGAGGTGTGC]




>consensus_4836#1
CCGACAAAAACGGAAAACCCAGAAAAAAGCAAAAAAGGAAAGGAAAGCAGAAAAACGGGA
TAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCACC
ACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGTG
GTGGGCCGATACAGCGATGCGATGACCACATCAAGGGACTGATCCAGTCGTACGTGAATC
TGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTGG
GCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGAATATTCGGGCAGG
AAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCCGCACGGTACG
CGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGT
CGGCCGCAATCGCCCACCGGCACAATGCGAAGCAGGAGATGGACGAGGATCTGCGCTGCT
TTGCGACCGGCATCGAGGTGTGC

consensusID : consensus_4836#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [ATCGCCCCGAGGCTATACTTTGCCATCCGTTTCGGATTACGGCGGTGGGCCGATACAGCGATGCGATGACCACATCAAGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACCAAACCGGACGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAGGAAGCGTTACAATACGCGAAGCAGTACATATGAATGCCAAAGCACTGGCCTGCGCGGTACGCGGCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGTGCGCAATCGCCCACCGGCACAATGCGAAGCAGTGAGATGGACGAGTGACCTGCGCTGCTTCGCGACGGGATCGAGGTGTGCAAGCGGTCGACTTCAACAAGAACGGAGGA]

[+] EMBL AL930246             [ATCGCCCCGAGGCTATACTTTGCCATCCGTTTCGGATTACGGCGGTGGGCCGATACAGCGATGCGATGACCACATCAAGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACCAAACCGGACGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAGGAAGCGTTACAATACGCGAAGCAGTACATATGAATGCCAAAGCACTGGCCTGCGCGGTACGCGGCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGTGCGCAATCGCCCACCGGCACAATGCGAAGCAGTGAGATGGACGAGTGACCTGCGCTGCTTCGCGACGGGATCGAGGTGTGCAAGCGGTCGACTTCAACAAGAACGGAGGA]




>consensus_4836#2
ATCGCCCCGAGGCTATACTTTGCCATCCGTTTCGGATTACGGCGGTGGGCCGATACAGCG
ATGCGATGACCACATCAAGGACTGATCCAGTCGTACGTGAATCTGATCGTGGAAAATACC
AAACCGGACGTAACACCGACCAGCGTGGTGATTTGTACGTGGGCGATGCAGGTATCGCGT
ACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAGGAAGCGTTACAATACGCGA
AGCAGTACATATGAATGCCAAAGCACTGGCCTGCGCGGTACGCGGCCGACCCGAGGAACG
CTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGTGTCGTGCGCAATCGCCCACCG
GCACAATGCGAAGCAGTGAGATGGACGAGTGACCTGCGCTGCTTCGCGACGGGATCGAGG
TGTGCAAGCGGTCGACTTCAACAAGAACGGAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4836#0      ----CAGAATCCCCACGAGTCAGAAAAAAGCAAAAA-GGAAAGGAAAGCAGAAAAACGGG 55
consensus_4836#1      CCGACAAAAACGG-AAAACCCAGAAAAAAGCAAAAAAGGAAAGGAAAGCAGAAAAACGGG 59
consensus_4836#2      ------------------------------------------------------------
                                                                                  

consensus_4836#0      ATAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCAC 115
consensus_4836#1      ATAAACGTTTGGTGGCTGGAACACGAACACGAAGCAGTGCTTTCTTTTAGTTACAGCCAC 119
consensus_4836#2      ------------------------------------------------------------
                                                                                  

consensus_4836#0      CACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGC 175
consensus_4836#1      CACCCCCATTAGCTCCCTATGGGCACGCGATACTTTGCCAATCCGTTTCCGGATTACGGT 179
consensus_4836#2      ------------ATCGCCCCGAG---GCTATACTTTGCCA-TCCGTTTC-GGATTACGGC 43
                                   ** *   * *   ** *********** ******** ********* 

consensus_4836#0      GGTGGGCCGATACAGCGATGCGATTACCACATCAAGGGACTGATCCAGTCGTACGTGAAT 235
consensus_4836#1      GGTGGGCCGATACAGCGATGCGATGACCACATCAAGGGACTGATCCAGTCGTACGTGAAT 239
consensus_4836#2      GGTGGGCCGATACAGCGATGCGATGACCACATCAAGG-ACTGATCCAGTCGTACGTGAAT 102
                      ************************ ************ **********************

consensus_4836#0      CTGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTG 295
consensus_4836#1      CTGATCGTGGAAAATACCAAACCGGACCGTAACACCGACCAGCGTGGTGATTTGTACGTG 299
consensus_4836#2      CTGATCGTGGAAAATACCAAACCGGAC-GTAACACCGACCAGCGTGGTGATTTGTACGTG 161
                      *************************** ********************************

consensus_4836#0      GGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAG 355
consensus_4836#1      GGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGAATATTCGGGCAG 359
consensus_4836#2      GGCGATGCAGGTATCGCGTACATGTTCTTGAAGCTGCACGATGCGGGCATATTCGGGCAG 221
                      *********************************************** ************

consensus_4836#0      GAAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCC-GCACGGTA 414
consensus_4836#1      GAAGCGTTACAGTACGCGAAGCAGTACATAGTGAATGCCAAAGCACTGGCC-GCACGGTA 418
consensus_4836#2      GAAGCGTTACAATACGCGAAGCAGTACATA-TGAATGCCAAAGCACTGGCCTGCGCGGTA 280
                      *********** ****************** ******************** ** *****

consensus_4836#0      CGCGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGT 474
consensus_4836#1      CGCGGCCCGACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGT 478
consensus_4836#2      CGCGGCC-GACCCGAGGAACGCTGCTCCTTCCTGTGCGGCAATGCGGGCGTGTACGCGGT 339
                      ******* ****************************************************

consensus_4836#0      GTCGGCCGCAATCGCCCACCGGCACAATGCGAAGCAG-GAGATGGACGAG-GACCTGCGC 532
consensus_4836#1      GTCGGCCGCAATCGCCCACCGGCACAATGCGAAGCAG-GAGATGGACGAG-GATCTGCGC 536
consensus_4836#2      GTCGTGCGCAATCGCCCACCGGCACAATGCGAAGCAGTGAGATGGACGAGTGACCTGCGC 399
                      ****  ******************************* ************ ** ******

consensus_4836#0      TGCTTCGCGAACCGGCATCGAGGTGTGCAAGGCGGCTCGAACTTTCAACAAGAAACGGGC 592
consensus_4836#1      TGCTTTGCGA-CCGGCATCGAGGTGTGC-------------------------------- 563
consensus_4836#2      TGCTTCGCGA--CGGGATCGAGGTGTGCAAGCGGTCGACTTCAACAAGAACGGAGGA--- 454
                      ***** ****  *** ************                                

consensus_4836#0      ACAGACGAGCGAGGATACTGGTACGGCCCGGGCCGGGGTACCCTGTCCCGGG 644
consensus_4836#1      ----------------------------------------------------
consensus_4836#2      ----------------------------------------------------