These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence [CTTGAATGATTCCCAGTAAATTTCTTAAAAGAGCTAACGTGTTCGAGTAACAGTAGTTCGAAATACACACACACACACACTCACACATCTACTCCCAGTCTTTGCGTATATTGCTCGCCATATCTTCCCTCGGTACGTCGTGGTTGTGCGCATTTTTCAACACACACTGTTCAGGATTTGAAACCGAGGTGATGGCACGTGCTTTGCAGTTGGTGTGCCACTTGCTACATTTCCAGTACATTTTACCGCCATAGCAGTTGTTCTTGATGTAGCGATGTCCATCGTACATCAGCACATTGTTCCCACGGCCATTGGTGTACTGTATCTTGTTCGCATCCACCGCAACGGGTTTGTTAAATTTGCGAACCGTAAGTGTCGGTGAACGGTGAGCGTTATCCGTCTTTGCTGAACTCTTATTGAGTTTCAGCTTGGGTTGTTTTGGTTGTCCGTGTAGCTGTAACTTGAAGTACGGATTGCGCTCGTTATCCATCTTCAACTGAAAGTGAGTCACGTTTGGCGACTGTTTCCCTTCACGCGCCTTTCTGATATCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCAGATACGCCAGGTTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTATGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCG] [+] EMBL CNS09CR2 [CTTGAATGATTCCCAGTAAATTTCTTAAAAGAGCTAACGTGTTCGAGTAACAGTAGTTCGAAATACACACACACACACACTCACACATCTACTCCCAGTCTTTGCGTATATTGCTCGCCATATCTTCCCTCGGTACGTCGTGGTTGTGCGCATTTTTCAACACACACTGTTCAGGATTTGAAACCGAGGTGATGGCACGTGCTTTGCAGTTGGTGTGCCACTTGCTACATTTCCAGTACATTTTACCGCCATAGCAGTTGTTCTTGATGTAGCGATGTCCATCGTACATCAGCACATTGTTCCCACGGCCATTGGTGTACTGTATCTTGTTCGCATCCACCGCAACGGGTTTGTTAAATTTGCGAACCGTAAGTGTCGGTGAACGGTGAGCGTTATCCGTCTTTGCTGAACTCTTATTGAGTTTCAGCTTGGGTTGTTTTGGTTGTCCGTGTAGCTGTAACTTGAAGTACGGATTGCGCTCGTTATCCATCTTCAACTGAAAGTGAGTCACGTTTGGCGACTGTTTCCCTTCACGCGCCTTTCTGATATCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCAGATACGCCAGGTTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTATGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCG] consensusID : consensus_4843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 764 fasta sequence [GACCGTTTTATTCCTTCCTCACAAGCTTCCGCCCTTCGAAAGCAATACACGCGCAAATCTTATGGAGAAAATAACTCGCCGGACGCACACCACCGGCCAGCTCGCTGCGTGGAGCACTTGAACCCGATGCAGGGCGCGGATGAAGTACGAGCACACAACACAAACCGGCAAGCCAGCGGAAGGCGCGCACACGGCCGAGCGCGTTCGCGAATTTTTTAAGTAAATCCTTAACGGTAAGACTTCTGGTAGCGGGCGCGGGCACCTGGACCGCCGAACTTCTTCGGCTCGCAGCGACGCGGATCCGCAACCAGCAGCGTTCGGTCGTACTGGGTCAGGATGTCCTTCAGCTCCTTGCGCGACGCCTCAACGACGTACTTCTGGTAGAAGGAGAACAGCGCCTTGGAGATGGCCTGCCGGATGGCGTAGATCTGTGCTACGTGACCCCCACCGCTCACGCGGATTCGGATGTCGACGCCGGCGAACTTTTCCTTGCCGAGCAGCAGCAGCGGCTCCTGCAGCTTGTAGCGCAGGATCTTCGGCTCGATCTGGTCCAGCGGGCGGCCATTGATACGCAGCAGTACCTTTCCGCGCTTGCAGTTTGCAACGGCGGTGGCAGTTTTCTTGCGTTCGAAGACCTGGACTGCGTTAACTTTCTCCTTGCGTGCTTTCGGCATGTTTGATTCGTAGCACAACAAAACTAGAAAAGGAAAGGCCAGCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCCTTTAGAGTTTTT] [+] EMBL CNS09063 [GACCGTTTTATTCCTTCCTCACAAGCTTCCGCCCTTCGAAAGCAATACACGCGCAAATCTTATGGAGAAAATAACTCGCCGGACGCACACCACCGGCCAGCTCGCTGCGTGGAGCACTTGAACCCGATGCAGGGCGCGGATGAAGTACGAGCACACAACACAAACCGGCAAGCCAGCGGAAGGCGCGCACACGGCCGAGCGCGTTCGCGAATTTTTTAAGTAAATCCTTAACGGTAAGACTTCTGGTAGCGGGCGCGGGCACCTGGACCGCCGAACTTCTTCGGCTCGCAGCGACGCGGATCCGCAACCAGCAGCGTTCGGTCGTACTGGGTCAGGATGTCCTTCAGCTCCTTGCGCGACGCCTCAACGACGTACTTCTGGTAGAAGGAGAACAGCGCCTTGGAGATGGCCTGCCGGATGGCGTAGATCTGTGCTACGTGACCCCCACCGCTCACGCGGATTCGGATGTCGACGCCGGCGAACTTTTCCTTGCCGAGCAGCAGCAGCGGCTCCTGCAGCTTGTAGCGCAGGATCTTCGGCTCGATCTGGTCCAGCGGGCGGCCATTGATACGCAGCAGTACCTTTCCGCGCTTGCAGTTTGCAACGGCGGTGGCAGTTTTCTTGCGTTCGAAGACCTGGACTGCGTTAACTTTCTCCTTGCGTGCTTTCGGCATGTTTGATTCGTAGCACAACAAAACTAGAAAAGGAAAGGCCAGCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCCTTTAGAGTTTTT] consensusID : consensus_4843#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [CAGAATCGCCCGAGGTTAGAATTGAATAGTTCTTTATTGCTGGACACTGGGGTGACGCAAAAGTGAGAGCCACAATCACGGAAGCATCCGGGTACTAGGCCAGCCCTCAGTATGTCTGTCCCTGTGAGCTGCGTACTCTGTCGATAGCATGAACAACATCGACAGCAGCCATCGGCATCGGCGGGCATGGTCTAACCACGTCTCCTCCAACGGCCGCCATGATGACGATGGCGGACTGGACGGAAAGACGATGAACACACGGGGCCAATGATAGACGAGATGANGAGCNCCCGCGANCAAACAGTATCCATATGCCGGCACGCGAACCACGGNAANCGGAATAG] [+] EMBL AL929702 [CAGAATCGCCCGAGGTTAGAATTGAATAGTTCTTTATTGCTGGACACTGGGGTGACGCAAAAGTGAGAGCCACAATCACGGAAGCATCCGGGTACTAGGCCAGCCCTCAGTATGTCTGTCCCTGTGAGCTGCGTACTCTGTCGATAGCATGAACAACATCGACAGCAGCCATCGGCATCGGCGGGCATGGTCTAACCACGTCTCCTCCAACGGCCGCCATGATGACGATGGCGGACTGGACGGAAAGACGATGAACACACGGGGCCAATGATAGACGAGATGANGAGCNCCCGCGANCAAACAGTATCCATATGCCGGCACGCGAACCACGGNAANCGGAATAG] consensusID : consensus_4843#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence [CCTTGGCGGCCGTGGGCGCTTGCTTGGTCGGCTGGCCTCGGTCGTCGCCCAGCCGATCCTGTCTGGTCACTCGGTGGTCGTGGTGCGCTGCGCGGGCCTTCCGCTGTCGGGCCATTTCTTCCGCCACACGTTCAAGTTCTTGGCCTACCTGCGGCCCCGCTGTCACGTCAACCCGGCACGCGGTCCATTCCATTTCCGCGCTCCGCGCCGTATGTTGTGGCAGGCCATCCGTGGCATGGTCCCC] [+] EMBL CNS08ZNB [CCTTGGCGGCCGTGGGCGCTTGCTTGGTCGGCTGGCCTCGGTCGTCGCCCAGCCGATCCTGTCTGGTCACTCGGTGGTCGTGGTGCGCTGCGCGGGCCTTCCGCTGTCGGGCCATTTCTTCCGCCACACGTTCAAGTTCTTGGCCTACCTGCGGCCCCGCTGTCACGTCAACCCGGCACGCGGTCCATTCCATTTCCGCGCTCCGCGCCGTATGTTGTGGCAGGCCATCCGTGGCATGGTCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4843#2 ------------------------------------------------------------ consensus_4843#3 ------------------------------------------------------------ consensus_4843#1 -----------GACCGTTTTATTCCTTCCTCACAAGCTTCCGCCCTTCGAAAGCAATACA 49 consensus_4843#0 CTTGAATGATTCCCAGTAAATTTCTTAAAAGAGCTAACGTGTTCGAGTAACAGTAGTTCG 60 consensus_4843#2 ------------------------------------------------------------ consensus_4843#3 ------------------------------------------------------------ consensus_4843#1 CGCGCAAATCTTATGGAGAAAATAACTCGCCGGACGCACACCACCGGCCAGCTCGCTGCG 109 consensus_4843#0 AAATACACACACACACACACTCACACATCTACTCCCAGTCTTTGCGTATATTGCTCGCCA 120 consensus_4843#2 ------------------------------------------------------------ consensus_4843#3 ------------------------------------------------------------ consensus_4843#1 TGGAGCACTTGAACCCGATGCAGGGCGCGGATGAAGTACGAGCACACAACACAAACCGGC 169 consensus_4843#0 TATCTTCCCTCGGTACGTCGTGGTTGTGCGCATTTTTCAACACACACTGTTCAGGATTTG 180 consensus_4843#2 ------------------------------------------------------------ consensus_4843#3 ------------------------------------------------------------ consensus_4843#1 AAGCCAGCGGAAGGCGCGCACACGGCCGAGCGCGTTCGCGAATTTTTTAAGTAAATCCTT 229 consensus_4843#0 AAACCGAGGTGATGGCACGTGCTTTGCAGTTGGTGTGCCACTTGCTACATTTCCAGTACA 240 consensus_4843#2 --------------------------------------------------------CAGA 4 consensus_4843#3 ------------------------------------------------------------ consensus_4843#1 AACGGTAAGACTTCTGGTAGCGGGCGCGGGCACCTGGACCGCCGAACTTCTTCGGCTCGC 289 consensus_4843#0 TTTTACCGCCATAGCAGTTGTTCTTGATGTAGCGATGTCCATCGTACATCAGCACATTGT 300 consensus_4843#2 ATCGCCCGAGGTTAGAATTGAATAGTTCTTTATTGCTGGACACTGGGGTGACGCAAAAGT 64 consensus_4843#3 ------------------------------------------------------------ consensus_4843#1 AGCGACGCGGATCCGCAACCAGCAGCGTTCGGTCGTACTGGGTCAGGATGTCCTTCAGCT 349 consensus_4843#0 TCCCACGGCCATTGGTGTACTGTATCTTGTTCGCATCCACCGCAACGGGTTTGTTAAATT 360 consensus_4843#2 ----GAGAGCCACAATCACGGAAGCATCCGGGTACTAGGCCAGC-CCTCAGTATGTCTGT 119 consensus_4843#3 -----------------------CCTTGGCGGCCGTGGGCGCTT-GCTTGGT-CGGCTGG 35 consensus_4843#1 CCTTGCGCGACGCCTCAACGACGTACTTCTGGTAGAAGGAGAACAGCGCCTTGGAGATGG 409 consensus_4843#0 TGCGAACCGTAAGTGTCGGTGAACGGTGAGCGTTATCCGTCTTTGCTGAACTCTTATTGA 420 * * * * ** consensus_4843#2 CCCTGTGAGCTGCGTAC-TCTGTCGATAGCATGAACAACATCG-----ACAG-------C 166 consensus_4843#3 CCTCGGTCGTCGCCCAG-CCGATC--CTGTCTGGTCAC--TCG-----GTGG-------T 78 consensus_4843#1 CCTGCCGGATGGCGTAGATCTGTG--CTACGTGACCCCCACCGCTCACGCGGATT----C 463 consensus_4843#0 GTTTCAGCTTGGGTTGTTTTGGTTGTCCGTGTAGCTGTAACTTGAAGTACGGATTGCGCT 480 * * * * consensus_4843#2 AGCCATCGGCATCG--------GCGGG---CATGGTCTAACCACGTCTCCTCCAACGGCC 215 consensus_4843#3 CGTGGTGCGC-TGC--------GCGGG---CCTTCCGCTGTCGGGCCATTTCTTCCGCCA 126 consensus_4843#1 GGATGTCGACGCCG--------GCGAA---CTTTTCCTTGCCGAG-CAGCAGCAGCGGCT 511 consensus_4843#0 CGTTATCCATCTTCAACTGAAAGTGAGTCACGTTTGGCGACTGTTTCCCTTCACGCGCCT 540 * * * * * * * ** * consensus_4843#2 GCC--ATGATGACGATGGCGGACTGG-ACGGAAAGACGATGAACA-CACG---GGGCCAA 268 consensus_4843#3 --C--ACGTTCAAGTTCTTGGCCTAC-CTGCGGCCCCGCTGT-CA-CGTC---AACCC-- 174 consensus_4843#1 CCT--GCAGCTTGTAGCGCAGGATCT-TCGGCTCGATCTGGTCCAGCGGG---CGGCCAT 565 consensus_4843#0 TTCTGATATCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCA 600 * * * * * consensus_4843#2 TGATAGACGAGATGANGAGCNCCCGCGANCAAACAGTATCCAT--ATGCCGGCACGCGAA 326 consensus_4843#3 -GGCACGCGGTCCATTCCATTTCCGCGCTC---CGCGCCGTAT--GTTGTGGCAGGCCAT 228 consensus_4843#1 TGATACGCAG--CAGTACCTTTCCGCGCTTG--CAGTTTGCAACGGCGGTGGCAGTTTTC 621 consensus_4843#0 CGAATCCAGATACGCCAGGTTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGT 660 * * * * consensus_4843#2 CCACGGNAANCGGAATAG------------------------------------------ 344 consensus_4843#3 CCGTGGCATGGTCCCC-------------------------------------------- 244 consensus_4843#1 TTGCGTTCGAAGACCTGGACTGCGTTAACTTTCTCCTTGCGTGCTTTCGGCATGTTTGAT 681 consensus_4843#0 ACTTGCCCATGGCCATGTCACCGTATGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGG 720 * consensus_4843#2 ------------------------------------------------------------ consensus_4843#3 ------------------------------------------------------------ consensus_4843#1 TCGTAGCACAACAAAACTAGAAAAGGAAAGGCCAGCCAGTTGGCCAACAGTTCTCGAGGA 741 consensus_4843#0 CATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTT 780 consensus_4843#2 -------------------------------------------------------- consensus_4843#3 -------------------------------------------------------- consensus_4843#1 ATTCCGCAGCCTTTAGAGTTTTT--------------------------------- 764 consensus_4843#0 CGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCG 836 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||