These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 759 fasta sequence [AATTTTGGAAACTTGATTGATTGCGTGAGGAAGGGAAAACACGGAAGGAAACAACATCTAACAATTTTCCCGTGTGCGTGTGTGTGACTGTGGTGTATATGATGGTGATGGTGGGTGTATGTTTGTGAGGAGTGCGGCATTGTACAGTGTATAAAAAAGCTCAGATTTGTTGCTACGTCGAGAGAGGCTCCAGGTTTTCGGACAGTTCGGCAACTTCAACCCAACCAAACTGATGTGCCACACATGTGCCAGTGAAGTTATGCTGCATTGTCAATCGCCCCATCCCCTCACTAGCAATACAACACACGACCTTATATGCAATCTACTGAGACACACACATACACGCGAGTTGTTGCCAAAATACAATTGATCGAACCAAAGGGTAAGTTTGCAGAAGTATATCCTCTGTCTTGTTGGAGTTGTGACTGCTCTAGAAGAAGCACAAAAGTAACCCAGAACGATCAACAAGAAAACCATCTCTCTAGCCTAGCCTACTCTAGCACATATGATATCGGTGCAGAAGAAAGAGCGCATTTCAAGATCAACGTTCATGATCTCTCTTATGGTAAATGGAGTAAAGGAAAACGGAAGGAAGAAAACCCAAGAAGTGCACAATGGATATAAGAAGTAAAAAAAAACAAGATACTAGAAACGAAGAAGGGACGTAAGATTACGAAAATAAGGACTATAATCGACTAAATAAAACACACATACTGTGGGAGAGCGAGAACGAGAGATAGAGAGAGAGAGAGGAAAGCT] [+] EMBL BM620613 [AATTTTGGAAACTTGATTGATTGCGTGAGGAAGGGAAAACACGGAAGGAAACAACATCTAACAATTTTCCCGTGTGCGTGTGTGTGACTGTGGTGTATATGATGGTGATGGTGGGTGTATGTTTGTGAGGAGTGCGGCATTGTACAGTGTATAAAAAAGCTCAGATTTGTTGCTACGTCGAGAGAGGCTCCAGGTTTTCGGACAGTTCGGCAACTTCAACCCAACCAAACTGATGTGCCACACATGTGCCAGTGAAGTTATGCTGCATTGTCAATCGCCCCATCCCCTCACTAGCAATACAACACACGACCTTATATGCAATCTACTGAGACACACACATACACGCGAGTTGTTGCCAAAATACAATTGATCGAACCAAAGGGTAAGTTTGCAGAAGTATATCCTCTGTCTTGTTGGAGTTGTGACTGCTCTAGAAGAAGCACAAAAGTAACCC ] [+] EMBL BM636164 [ ccgGCCACACATGTGCCAGTGAAGTTATGCTGCATTGTCAATCGCCCCATCCCCTCACTAGCAATACAACACACGACCTTATATGCAATCTACTGAGACACACACATACACGCGAGTTGTTGCCAAAATACAATTGATCGAAGCAAAGGGTAAGTTTGCAGAAGTATATCCTCTGTCTTGTTGGAGTTGTGACTGCTCTAGAAGAAGCAAAAAAGTAACCCAGAACGATCAACAAGAAAACCATCTCTCTAGCCTAGCCTACTCTAGCACATATGATATCGGTGCAGAAGAAAGAGCGCATTTCAAGATCAACGTTCATGATCTCTCTTATGGTAAATGGAGTAAAGGAAAACGGAAGGAAGAAAACCCAAGAAGTGCACAATGGATATAAGAAGTAAAAAAAAACAAGATACTAGAAACGAAGAAGGGACGTAAGATTACGAAAATAAGGACTATAATCGACTAAATAAAACACACATACTGTGGGAGAGCGAGAACGAGAGATAGAGAGAGAGAGAGGAAAGCT] consensusID : consensus_4844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [AGAATNCCCGCAGGTTAAATGGTAAAGCAAGTGACATTTAACAACACAGCAACTATATTTGAGTGAGGGGGCGAATGCTCTTTTCAACAAACTATCCTTACCGCTAGGTATTGTGTTTAGGCTGTTTAAAAGAGCATTCACCTGCTTATTAGGATAACAGCAGCAGCAGACGAGAACGTACGACTATTAAGCAAGTCATGTTGGAACACACACACATACACGGAACGACGAGAATTACGCGACGCCAAAACACGAGAAATGAGAAATGAGGAGAAAAACCGAAGAATAACAATCGGCACATAAGAGCTCTGCAAAACGAAATATGCGAACATCTTGCATTGCAAAGAGCGCAGCGCAGTAGAGAAGAAGCGTGTATGCTTTTGCCTACGGACGCGTAGTAGAACAGGCGCGAGCATACAACCAGAGCACACAACGGAGACACCATCTAACTANGGAAACGCAACGATCAGATGACGGCAGGGCACAAGAGCCATTACCGCTCNNAACTGGTCCACAACATGGTTACCTATCACATCCGNTACAANAGTGGTTACCCACGTTCCANACAACACCTGGTCCTCCTATGGGAANACTAAATCACTCATGCATNTNTCTACCTCGATNAACCCCTTTATCNCTACGAAAACAGCANATNTTCCAAGCTAAAGAGACCAAACACCACCACACA] [+] EMBL AL695247 [AGAATNCCCGCAGGTTAAATGGTAAAGCAAGTGACATTTAACAACACAGCAACTATATTTGAGTGAGGGGGCGAATGCTCTTTTCAACAAACTATCCTTACCGCTAGGTATTGTGTTTAGGCTGTTTAAAAGAGCATTCACCTGCTTATTAGGATAACAGCAGCAGCAGACGAGAACGTACGACTATTAAGCAAGTCATGTTGGAACACACACACATACACGGAACGACGAGAATTACGCGACGCCAAAACACGAGAAATGAGAAATGAGGAGAAAAACCGAAGAATAACAATCGGCACATAAGAGCTCTGCAAAACGAAATATGCGAACATCTTGCATTGCAAAGAGCGCAGCGCAGTAGAGAAGAAGCGTGTATGCTTTTGCCTACGGACGCGTAGTAGAACAGGCGCGAGCATACAACCAGAGCACACAACGGAGACACCATCTAACTANGGAAACGCAACGATCAGATGACGGCAGGGCACAAGAGCCATTACCGCTCNNAACTGGTCCACAACATGGTTACCTATCACATCCGNTACAANAGTGGTTACCCACGTTCCANACAACACCTGGTCCTCCTATGGGAANACTAAATCACTCATGCATNTNTCTACCTCGATNAACCCCTTTATCNCTACGAAAACAGCANATNTTCCAAGCTAAAGAGACCAAACACCACCACACA] consensusID : consensus_4844#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CCGCCCACGCGTCCGAAGAAGTAAAAATGCGTGAAACAAGTACCATGGATGTGGACCCTCCGCGGGGGGAAGGATTCCGTTCGTATTTCGTGCAGAAGATCGAGGAACTGCAGCTCATCGTAGCGGAGAAGAACCAGAACCTGCGTCGTCTGCAGGCCCAGCGCAATGAGCTGAACGCCAAGGTTAGGATGCTGCGGGAGGAGCTCCAGCTGCTGCAGGAGCAGGGCAGCTACGTCGGCGAGGTGGTGAAACCGATGGACAAGAAGAAGGTCCTGGTGAAGGTACACCCGGAGGGCAAGTTCGTGGTCGACATTGACAAAAACATTGACATCAACGACGTGACGCCAAACTGCCGTGTGGCGCTGCGCAACGAATCGTACACCCTGCACAAGATCCTGCCGAACAAGGTCGATCCGCTGGTGTCGCTCATGATGGTGGAGAAGGTCCCGGACTCGACGTACGAGATGGTGGGCGGTCGGGATAAGCAGATTAAGGAAATTAAGGAGGTGATTGAGCTGCCGGTAAAACATCCGGAACTGTTCGATGCGCTCGGTATCGCCCAGCCGAAGGGTGTGCTGCTGTACGGACCGCCCGGAACGGGCAAAACACTGCTGGCCCGTGCCGTCGCC] [+] EMBL BM596562 [CCGCCCACGCGTCCGAAGAAGTAAAAATGCGTGAAACAAGTACCATGGATGTGGACCCTCCGCGGGGGGAAGGATTCCGTTCGTATTTCGTGCAGAAGATCGAGGAACTGCAGCTCATCGTAGCGGAGAAGAACCAGAACCTGCGTCGTCTGCAGGCCCAGCGCAATGAGCTGAACGCCAAGGTTAGGATGCTGCGGGAGGAGCTCCAGCTGCTGCAGGAGCAGGGCAGCTACGTCGGCGAGGTGGTGAAACCGATGGACAAGAAGAAGGTCCTGGTGAAGGTACACCCGGAGGGCAAGTTCGTGGTCGACATTGACAAAAACATTGACATCAACGACGTGACGCCAAACTGCCGTGTGGCGCTGCGCAACGAATCGTACACCCTGCACAAGATCCTGCCGAACAAGGTCGATCCGCTGGTGTCGCTCATGATGGTGGAGAAGGTCCCGGACTCGACGTACGAGATGGTGGGCGGTCGGGATAAGCAGATTAAGGAAATTAAGGAGGTGATTGAGCTGCCGGTAAAACATCCGGAACTGTTCGATGCGCTCGGTATCGCCCAGCCGAAGGGTGTGCTGCTGTACGGACCGCCCGGAACGGGCAAAACACTGCTGGCCCGTGCCGTCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4844#0 AATTTTGGAAACTTGATTGATTGCGTGAGGAAGGGAAAACACGGAAGGAAACAACATCTA 60 consensus_4844#1 -----------------AGAATNCCC---GCAGGTTAAATGGTAAAGCAAGTGACATTTA 40 consensus_4844#2 ---------------------------------------------------------CCG 3 consensus_4844#0 ACAATTTTCCCGTGTGCGTGTGTGTGACTGTGGTGTATATGATGGTGATGGTGGGTGTAT 120 consensus_4844#1 ACAACACAGCAAC-TATATTTGAGTGAG---GGGGCGAATGCTCTTTTCAACAAACTATC 96 consensus_4844#2 CCCACGCGTCCGAAGAAGTAAAAATGCGT--GAAACAAGTACCATGGATG-TGGACCCTC 60 * * * * ** * * consensus_4844#0 GTTTGTGAGGAGTGCGGCATTG-TACAGTGTATAAAAAAGCTCAGATTTG-TTGCTACGT 178 consensus_4844#1 CTTACCGCTAGGTATTGTGTT--TAGGCTGTTTAAAAGAGCATTCACCTGCTTATTAGGA 154 consensus_4844#2 CGCGGGGGGAAGGATTCCGTTCGTATTTCGTGCAGAAGATCGAGGAACTG------CAGC 114 * * ** ** ** * ** * * * ** * consensus_4844#0 CGAGAGAGGCTCCAGGTTTTCGGACAGTTCGGCAACTTCAACCCAACCAAACTGATGTGC 238 consensus_4844#1 TAACAGCAGCAGCAGA---CGAGAACGTACGACTATT--AAGCAAGTCA---TGTTGGAA 206 consensus_4844#2 TCATCGTAGCGGAGAAGAACCAGAACCTGCGTCGTCTGCAGGCCCAGCG---CAATGAGC 171 * * ** ** * ** * * * * * ** consensus_4844#0 CACACATGTGCCAGTGAAGTTATGCTGCATTGTCAATCGCCCCATCCCCTCACTAGCAAT 298 consensus_4844#1 CACACACACATACACGGAACGACGA-GAATTACGCGACGCCAAAACACGAGAAATGAGAA 265 consensus_4844#2 TGAACGC-------CAAGGTTAGGATGCTGCGGGAGGAGCTCCAGCTGCTGCAGGAGCAG 224 ** * * * ** * * * consensus_4844#0 ACAACACACGACCTTATATGCAATCTACTGAGACACACACATAC-ACGCGAGTTGTTGCC 357 consensus_4844#1 ATGAGGAGAAAAACCGAAGAATAACAATCGGCACATAAGAGCTCTGCAAAACGAAATATG 325 consensus_4844#2 GGCAGCTACGTCGGCGAGGTGGTGAAACCGATGGACAAGAA----GAAGGTCCTGGTGAA 280 * * * * * * consensus_4844#0 AAAATACAATTGATCGAACCAAAGGGTAAGTTTGCAGAAGTATATCCTCTGTCTTGTTGG 417 consensus_4844#1 CGAACATCTTGCATTGCAA-AGAGCGCAGCGCAGTAGAGAAGAAGCGTGTATGCTTTTGC 384 consensus_4844#2 GGTACACC-CGGAGGGCA--AGTTCGTGGTCGACATTGACAAAAACAT---TGACATCAA 334 * * * * * * * * * * * * consensus_4844#0 AGTTGTGACTGCTCTAGAAGAAGCACAAAAGTA-ACCCAGAACGATCAACAAGAAAACCA 476 consensus_4844#1 CTACGGACGCGTAGTAGAACAGGCGCGAGCATACAACCAGAGCACACAACGGAGACACCA 444 consensus_4844#2 CGACGTGACGCCAAACTGCCGTGTGGCGCTGCGCAACGA-ATCGTACACCCTGCACAAGA 393 * * * * * * * ** * * * * consensus_4844#0 TCTCTCTAGCCTAGCCTACTCTAGCACATATGATATCGGTGCAGAAGAAAGAGCGCATTT 536 consensus_4844#1 TCTAACTANGGAAACGCAAC---GATCAGATGACGGCAGGGCACAAGAGCCATTACCGCT 501 consensus_4844#2 TCCTGCCGAACAAGGTCGAT------CCGCTGGTGTCGCTCATGATGGTGGAGAAGGTCC 447 ** * * * ** * * * * consensus_4844#0 CAAGATCAACGTTCATGATCTCT-CTTATGGTAAATGGAGTAAAGGAAA--ACGGAAGGA 593 consensus_4844#1 CNNAACTGGTCCACAACATGGTTACCTATCACATCCGNTACAANAGTGGTTACCCACGTT 561 consensus_4844#2 CGGACTCGACGTACGAGATGGTG------GGCGGTCGGGATAAGCA-GATTAAGGAAATT 500 * * ** * ** * * consensus_4844#0 AGAAAACCCAAGAAGTGCACA-ATGGATATAAGAAGTAAAAAAAAACAAGATACTAGAAA 652 consensus_4844#1 CCANACAACACCTGGTCCTCCTATGGGAANACTAAATCACTCATGC--ATNTNTCTACCT 619 consensus_4844#2 AAGGAGGTGATTGAGCTGCCGGTAAAACATCCGGAACTGTTCGATGCGCTCGGTATCGCC 560 * * * * * * consensus_4844#0 CGAAGAAGGGACGTAAGATTACGAAAATAAGGACTATAATCGACTAAATAAAACACACAT 712 consensus_4844#1 CGATNAACCCCTTTATCNCTACGAAAACAGCANATNTTCCAAGCTAAAGAGACCAAACAC 679 consensus_4844#2 CAGCCGAAGGGTGTGCTGCTGTACGGAC--CGCCCGGAACGGGCAAAACACTGCTGGCCC 618 * * * * * * *** * * * consensus_4844#0 --ACTGTGGGAGAGCGAGAACGAGAGATAGAGAGAGAGAGAGGAAAGCT 759 consensus_4844#1 C-ACCACACA--------------------------------------- 688 consensus_4844#2 GTGCCGTCGCC-------------------------------------- 629 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||