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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 759 fasta sequence
[AATTTTGGAAACTTGATTGATTGCGTGAGGAAGGGAAAACACGGAAGGAAACAACATCTAACAATTTTCCCGTGTGCGTGTGTGTGACTGTGGTGTATATGATGGTGATGGTGGGTGTATGTTTGTGAGGAGTGCGGCATTGTACAGTGTATAAAAAAGCTCAGATTTGTTGCTACGTCGAGAGAGGCTCCAGGTTTTCGGACAGTTCGGCAACTTCAACCCAACCAAACTGATGTGCCACACATGTGCCAGTGAAGTTATGCTGCATTGTCAATCGCCCCATCCCCTCACTAGCAATACAACACACGACCTTATATGCAATCTACTGAGACACACACATACACGCGAGTTGTTGCCAAAATACAATTGATCGAACCAAAGGGTAAGTTTGCAGAAGTATATCCTCTGTCTTGTTGGAGTTGTGACTGCTCTAGAAGAAGCACAAAAGTAACCCAGAACGATCAACAAGAAAACCATCTCTCTAGCCTAGCCTACTCTAGCACATATGATATCGGTGCAGAAGAAAGAGCGCATTTCAAGATCAACGTTCATGATCTCTCTTATGGTAAATGGAGTAAAGGAAAACGGAAGGAAGAAAACCCAAGAAGTGCACAATGGATATAAGAAGTAAAAAAAAACAAGATACTAGAAACGAAGAAGGGACGTAAGATTACGAAAATAAGGACTATAATCGACTAAATAAAACACACATACTGTGGGAGAGCGAGAACGAGAGATAGAGAGAGAGAGAGGAAAGCT]
[+] EMBL BM620613 [AATTTTGGAAACTTGATTGATTGCGTGAGGAAGGGAAAACACGGAAGGAAACAACATCTAACAATTTTCCCGTGTGCGTGTGTGTGACTGTGGTGTATATGATGGTGATGGTGGGTGTATGTTTGTGAGGAGTGCGGCATTGTACAGTGTATAAAAAAGCTCAGATTTGTTGCTACGTCGAGAGAGGCTCCAGGTTTTCGGACAGTTCGGCAACTTCAACCCAACCAAACTGATGTGCCACACATGTGCCAGTGAAGTTATGCTGCATTGTCAATCGCCCCATCCCCTCACTAGCAATACAACACACGACCTTATATGCAATCTACTGAGACACACACATACACGCGAGTTGTTGCCAAAATACAATTGATCGAACCAAAGGGTAAGTTTGCAGAAGTATATCCTCTGTCTTGTTGGAGTTGTGACTGCTCTAGAAGAAGCACAAAAGTAACCC ]
[+] EMBL BM636164 [ ccgGCCACACATGTGCCAGTGAAGTTATGCTGCATTGTCAATCGCCCCATCCCCTCACTAGCAATACAACACACGACCTTATATGCAATCTACTGAGACACACACATACACGCGAGTTGTTGCCAAAATACAATTGATCGAAGCAAAGGGTAAGTTTGCAGAAGTATATCCTCTGTCTTGTTGGAGTTGTGACTGCTCTAGAAGAAGCAAAAAAGTAACCCAGAACGATCAACAAGAAAACCATCTCTCTAGCCTAGCCTACTCTAGCACATATGATATCGGTGCAGAAGAAAGAGCGCATTTCAAGATCAACGTTCATGATCTCTCTTATGGTAAATGGAGTAAAGGAAAACGGAAGGAAGAAAACCCAAGAAGTGCACAATGGATATAAGAAGTAAAAAAAAACAAGATACTAGAAACGAAGAAGGGACGTAAGATTACGAAAATAAGGACTATAATCGACTAAATAAAACACACATACTGTGGGAGAGCGAGAACGAGAGATAGAGAGAGAGAGAGGAAAGCT]
consensusID : consensus_4844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[AGAATNCCCGCAGGTTAAATGGTAAAGCAAGTGACATTTAACAACACAGCAACTATATTTGAGTGAGGGGGCGAATGCTCTTTTCAACAAACTATCCTTACCGCTAGGTATTGTGTTTAGGCTGTTTAAAAGAGCATTCACCTGCTTATTAGGATAACAGCAGCAGCAGACGAGAACGTACGACTATTAAGCAAGTCATGTTGGAACACACACACATACACGGAACGACGAGAATTACGCGACGCCAAAACACGAGAAATGAGAAATGAGGAGAAAAACCGAAGAATAACAATCGGCACATAAGAGCTCTGCAAAACGAAATATGCGAACATCTTGCATTGCAAAGAGCGCAGCGCAGTAGAGAAGAAGCGTGTATGCTTTTGCCTACGGACGCGTAGTAGAACAGGCGCGAGCATACAACCAGAGCACACAACGGAGACACCATCTAACTANGGAAACGCAACGATCAGATGACGGCAGGGCACAAGAGCCATTACCGCTCNNAACTGGTCCACAACATGGTTACCTATCACATCCGNTACAANAGTGGTTACCCACGTTCCANACAACACCTGGTCCTCCTATGGGAANACTAAATCACTCATGCATNTNTCTACCTCGATNAACCCCTTTATCNCTACGAAAACAGCANATNTTCCAAGCTAAAGAGACCAAACACCACCACACA]
[+] EMBL AL695247 [AGAATNCCCGCAGGTTAAATGGTAAAGCAAGTGACATTTAACAACACAGCAACTATATTTGAGTGAGGGGGCGAATGCTCTTTTCAACAAACTATCCTTACCGCTAGGTATTGTGTTTAGGCTGTTTAAAAGAGCATTCACCTGCTTATTAGGATAACAGCAGCAGCAGACGAGAACGTACGACTATTAAGCAAGTCATGTTGGAACACACACACATACACGGAACGACGAGAATTACGCGACGCCAAAACACGAGAAATGAGAAATGAGGAGAAAAACCGAAGAATAACAATCGGCACATAAGAGCTCTGCAAAACGAAATATGCGAACATCTTGCATTGCAAAGAGCGCAGCGCAGTAGAGAAGAAGCGTGTATGCTTTTGCCTACGGACGCGTAGTAGAACAGGCGCGAGCATACAACCAGAGCACACAACGGAGACACCATCTAACTANGGAAACGCAACGATCAGATGACGGCAGGGCACAAGAGCCATTACCGCTCNNAACTGGTCCACAACATGGTTACCTATCACATCCGNTACAANAGTGGTTACCCACGTTCCANACAACACCTGGTCCTCCTATGGGAANACTAAATCACTCATGCATNTNTCTACCTCGATNAACCCCTTTATCNCTACGAAAACAGCANATNTTCCAAGCTAAAGAGACCAAACACCACCACACA]
consensusID : consensus_4844#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[CCGCCCACGCGTCCGAAGAAGTAAAAATGCGTGAAACAAGTACCATGGATGTGGACCCTCCGCGGGGGGAAGGATTCCGTTCGTATTTCGTGCAGAAGATCGAGGAACTGCAGCTCATCGTAGCGGAGAAGAACCAGAACCTGCGTCGTCTGCAGGCCCAGCGCAATGAGCTGAACGCCAAGGTTAGGATGCTGCGGGAGGAGCTCCAGCTGCTGCAGGAGCAGGGCAGCTACGTCGGCGAGGTGGTGAAACCGATGGACAAGAAGAAGGTCCTGGTGAAGGTACACCCGGAGGGCAAGTTCGTGGTCGACATTGACAAAAACATTGACATCAACGACGTGACGCCAAACTGCCGTGTGGCGCTGCGCAACGAATCGTACACCCTGCACAAGATCCTGCCGAACAAGGTCGATCCGCTGGTGTCGCTCATGATGGTGGAGAAGGTCCCGGACTCGACGTACGAGATGGTGGGCGGTCGGGATAAGCAGATTAAGGAAATTAAGGAGGTGATTGAGCTGCCGGTAAAACATCCGGAACTGTTCGATGCGCTCGGTATCGCCCAGCCGAAGGGTGTGCTGCTGTACGGACCGCCCGGAACGGGCAAAACACTGCTGGCCCGTGCCGTCGCC]
[+] EMBL BM596562 [CCGCCCACGCGTCCGAAGAAGTAAAAATGCGTGAAACAAGTACCATGGATGTGGACCCTCCGCGGGGGGAAGGATTCCGTTCGTATTTCGTGCAGAAGATCGAGGAACTGCAGCTCATCGTAGCGGAGAAGAACCAGAACCTGCGTCGTCTGCAGGCCCAGCGCAATGAGCTGAACGCCAAGGTTAGGATGCTGCGGGAGGAGCTCCAGCTGCTGCAGGAGCAGGGCAGCTACGTCGGCGAGGTGGTGAAACCGATGGACAAGAAGAAGGTCCTGGTGAAGGTACACCCGGAGGGCAAGTTCGTGGTCGACATTGACAAAAACATTGACATCAACGACGTGACGCCAAACTGCCGTGTGGCGCTGCGCAACGAATCGTACACCCTGCACAAGATCCTGCCGAACAAGGTCGATCCGCTGGTGTCGCTCATGATGGTGGAGAAGGTCCCGGACTCGACGTACGAGATGGTGGGCGGTCGGGATAAGCAGATTAAGGAAATTAAGGAGGTGATTGAGCTGCCGGTAAAACATCCGGAACTGTTCGATGCGCTCGGTATCGCCCAGCCGAAGGGTGTGCTGCTGTACGGACCGCCCGGAACGGGCAAAACACTGCTGGCCCGTGCCGTCGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4844#0 AATTTTGGAAACTTGATTGATTGCGTGAGGAAGGGAAAACACGGAAGGAAACAACATCTA 60
consensus_4844#1 -----------------AGAATNCCC---GCAGGTTAAATGGTAAAGCAAGTGACATTTA 40
consensus_4844#2 ---------------------------------------------------------CCG 3
consensus_4844#0 ACAATTTTCCCGTGTGCGTGTGTGTGACTGTGGTGTATATGATGGTGATGGTGGGTGTAT 120
consensus_4844#1 ACAACACAGCAAC-TATATTTGAGTGAG---GGGGCGAATGCTCTTTTCAACAAACTATC 96
consensus_4844#2 CCCACGCGTCCGAAGAAGTAAAAATGCGT--GAAACAAGTACCATGGATG-TGGACCCTC 60
* * * * ** * *
consensus_4844#0 GTTTGTGAGGAGTGCGGCATTG-TACAGTGTATAAAAAAGCTCAGATTTG-TTGCTACGT 178
consensus_4844#1 CTTACCGCTAGGTATTGTGTT--TAGGCTGTTTAAAAGAGCATTCACCTGCTTATTAGGA 154
consensus_4844#2 CGCGGGGGGAAGGATTCCGTTCGTATTTCGTGCAGAAGATCGAGGAACTG------CAGC 114
* * ** ** ** * ** * * * ** *
consensus_4844#0 CGAGAGAGGCTCCAGGTTTTCGGACAGTTCGGCAACTTCAACCCAACCAAACTGATGTGC 238
consensus_4844#1 TAACAGCAGCAGCAGA---CGAGAACGTACGACTATT--AAGCAAGTCA---TGTTGGAA 206
consensus_4844#2 TCATCGTAGCGGAGAAGAACCAGAACCTGCGTCGTCTGCAGGCCCAGCG---CAATGAGC 171
* * ** ** * ** * * * * * **
consensus_4844#0 CACACATGTGCCAGTGAAGTTATGCTGCATTGTCAATCGCCCCATCCCCTCACTAGCAAT 298
consensus_4844#1 CACACACACATACACGGAACGACGA-GAATTACGCGACGCCAAAACACGAGAAATGAGAA 265
consensus_4844#2 TGAACGC-------CAAGGTTAGGATGCTGCGGGAGGAGCTCCAGCTGCTGCAGGAGCAG 224
** * * * ** * * *
consensus_4844#0 ACAACACACGACCTTATATGCAATCTACTGAGACACACACATAC-ACGCGAGTTGTTGCC 357
consensus_4844#1 ATGAGGAGAAAAACCGAAGAATAACAATCGGCACATAAGAGCTCTGCAAAACGAAATATG 325
consensus_4844#2 GGCAGCTACGTCGGCGAGGTGGTGAAACCGATGGACAAGAA----GAAGGTCCTGGTGAA 280
* * * * * *
consensus_4844#0 AAAATACAATTGATCGAACCAAAGGGTAAGTTTGCAGAAGTATATCCTCTGTCTTGTTGG 417
consensus_4844#1 CGAACATCTTGCATTGCAA-AGAGCGCAGCGCAGTAGAGAAGAAGCGTGTATGCTTTTGC 384
consensus_4844#2 GGTACACC-CGGAGGGCA--AGTTCGTGGTCGACATTGACAAAAACAT---TGACATCAA 334
* * * * * * * * * * * *
consensus_4844#0 AGTTGTGACTGCTCTAGAAGAAGCACAAAAGTA-ACCCAGAACGATCAACAAGAAAACCA 476
consensus_4844#1 CTACGGACGCGTAGTAGAACAGGCGCGAGCATACAACCAGAGCACACAACGGAGACACCA 444
consensus_4844#2 CGACGTGACGCCAAACTGCCGTGTGGCGCTGCGCAACGA-ATCGTACACCCTGCACAAGA 393
* * * * * * * ** * * * *
consensus_4844#0 TCTCTCTAGCCTAGCCTACTCTAGCACATATGATATCGGTGCAGAAGAAAGAGCGCATTT 536
consensus_4844#1 TCTAACTANGGAAACGCAAC---GATCAGATGACGGCAGGGCACAAGAGCCATTACCGCT 501
consensus_4844#2 TCCTGCCGAACAAGGTCGAT------CCGCTGGTGTCGCTCATGATGGTGGAGAAGGTCC 447
** * * * ** * * * *
consensus_4844#0 CAAGATCAACGTTCATGATCTCT-CTTATGGTAAATGGAGTAAAGGAAA--ACGGAAGGA 593
consensus_4844#1 CNNAACTGGTCCACAACATGGTTACCTATCACATCCGNTACAANAGTGGTTACCCACGTT 561
consensus_4844#2 CGGACTCGACGTACGAGATGGTG------GGCGGTCGGGATAAGCA-GATTAAGGAAATT 500
* * ** * ** * *
consensus_4844#0 AGAAAACCCAAGAAGTGCACA-ATGGATATAAGAAGTAAAAAAAAACAAGATACTAGAAA 652
consensus_4844#1 CCANACAACACCTGGTCCTCCTATGGGAANACTAAATCACTCATGC--ATNTNTCTACCT 619
consensus_4844#2 AAGGAGGTGATTGAGCTGCCGGTAAAACATCCGGAACTGTTCGATGCGCTCGGTATCGCC 560
* * * * * *
consensus_4844#0 CGAAGAAGGGACGTAAGATTACGAAAATAAGGACTATAATCGACTAAATAAAACACACAT 712
consensus_4844#1 CGATNAACCCCTTTATCNCTACGAAAACAGCANATNTTCCAAGCTAAAGAGACCAAACAC 679
consensus_4844#2 CAGCCGAAGGGTGTGCTGCTGTACGGAC--CGCCCGGAACGGGCAAAACACTGCTGGCCC 618
* * * * * * *** * * *
consensus_4844#0 --ACTGTGGGAGAGCGAGAACGAGAGATAGAGAGAGAGAGAGGAAAGCT 759
consensus_4844#1 C-ACCACACA--------------------------------------- 688
consensus_4844#2 GTGCCGTCGCC-------------------------------------- 629
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||