cluster # 4849

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Anopheles gambiae
cluster # 4849 cluster # 4849 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4849#0 length = 688 sequences # 1
consensus_4849#1 length = 682 sequences # 1

consensus_4849#2 length = 593 sequences # 1
consensus_4849#3 length = 459 sequences # 1

consensusID : consensus_4849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [CGACCCACGCGTCCGGAAACGGTGCTGGCCGCCGTCTACAAGGCGCTGAACGACCATCACGTCTACCTGGAGGGTACGCTGCTGAAGCCGAACATGGTGACGGCCGGCCAGAGCTGCGCCAAGAAGCCGACCGCCCAGGAGATTGCGCTCGCCACCGTGACCGCACTGCGCCGCACCGTGCCGGCCGCCGTGCCCGGCGTCACCTTCCTGTCGGGCGGCCAGTCCGAGGAGGAGGCGTCCGTGAACCTGAGCGCCATCAACCAGGTGCCGCTGCTGAGACCGTGGGCCCTGACCTTCTCGTACGGTCGCGCCCTGCAGGCCTCGGTGCTGCGCGCCTGGGGCGGCAAGAAGGAGAACGTGAAGGCCGCCCAGGAGGAGCTGATCAAGCGCGCAAAGGCCAACAGCGATGCCGCCCTCGGCAAGTACGGCGGTGGTGTGGAGGGTGCCGCCGGTGCTGGCAGCCTGTTCGTCGCCAACCACGCTTACTAAGGCGTTCGTTCGCTCCGCTCTGCATCTACATGAACTTGCATCCCACTAGAACACACCCTTTAGTACCACCCCACCTCCCCCTGTCCCTCGTCCCGCCACATGCACACACACTCGCACAGTGGCAAACAACACTCCCGGAGCGGCAATCTTCGCATTCGGTTACTATGCTGAGTGTAAGTGAAGAATTAGCAGCAGCAGT]

[+] EMBL BM620154             [CGACCCACGCGTCCGGAAACGGTGCTGGCCGCCGTCTACAAGGCGCTGAACGACCATCACGTCTACCTGGAGGGTACGCTGCTGAAGCCGAACATGGTGACGGCCGGCCAGAGCTGCGCCAAGAAGCCGACCGCCCAGGAGATTGCGCTCGCCACCGTGACCGCACTGCGCCGCACCGTGCCGGCCGCCGTGCCCGGCGTCACCTTCCTGTCGGGCGGCCAGTCCGAGGAGGAGGCGTCCGTGAACCTGAGCGCCATCAACCAGGTGCCGCTGCTGAGACCGTGGGCCCTGACCTTCTCGTACGGTCGCGCCCTGCAGGCCTCGGTGCTGCGCGCCTGGGGCGGCAAGAAGGAGAACGTGAAGGCCGCCCAGGAGGAGCTGATCAAGCGCGCAAAGGCCAACAGCGATGCCGCCCTCGGCAAGTACGGCGGTGGTGTGGAGGGTGCCGCCGGTGCTGGCAGCCTGTTCGTCGCCAACCACGCTTACTAAGGCGTTCGTTCGCTCCGCTCTGCATCTACATGAACTTGCATCCCACTAGAACACACCCTTTAGTACCACCCCACCTCCCCCTGTCCCTCGTCCCGCCACATGCACACACACTCGCACAGTGGCAAACAACACTCCCGGAGCGGCAATCTTCGCATTCGGTTACTATGCTGAGTGTAAGTGAAGAATTAGCAGCAGCAGT]




>consensus_4849#0
CGACCCACGCGTCCGGAAACGGTGCTGGCCGCCGTCTACAAGGCGCTGAACGACCATCAC
GTCTACCTGGAGGGTACGCTGCTGAAGCCGAACATGGTGACGGCCGGCCAGAGCTGCGCC
AAGAAGCCGACCGCCCAGGAGATTGCGCTCGCCACCGTGACCGCACTGCGCCGCACCGTG
CCGGCCGCCGTGCCCGGCGTCACCTTCCTGTCGGGCGGCCAGTCCGAGGAGGAGGCGTCC
GTGAACCTGAGCGCCATCAACCAGGTGCCGCTGCTGAGACCGTGGGCCCTGACCTTCTCG
TACGGTCGCGCCCTGCAGGCCTCGGTGCTGCGCGCCTGGGGCGGCAAGAAGGAGAACGTG
AAGGCCGCCCAGGAGGAGCTGATCAAGCGCGCAAAGGCCAACAGCGATGCCGCCCTCGGC
AAGTACGGCGGTGGTGTGGAGGGTGCCGCCGGTGCTGGCAGCCTGTTCGTCGCCAACCAC
GCTTACTAAGGCGTTCGTTCGCTCCGCTCTGCATCTACATGAACTTGCATCCCACTAGAA
CACACCCTTTAGTACCACCCCACCTCCCCCTGTCCCTCGTCCCGCCACATGCACACACAC
TCGCACAGTGGCAAACAACACTCCCGGAGCGGCAATCTTCGCATTCGGTTACTATGCTGA
GTGTAAGTGAAGAATTAGCAGCAGCAGT

consensusID : consensus_4849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence

                              [GTGTCGCTCTTGNNGGGGGAAAGGGGGGTGGCGTTGGCGGATATAGAGAGGCCAACAACACAAAGCACGGCGTCATAGCCACGGGCGGCACATTAGGGACTGATATGCGCTTAGTTGTTGTTTAGCAATATTTTCGTTAGTTGTGTACGTACACGCGTATTTTCCCAGCTTTCCTTTCTGTCCCCTTTTTTTGTTGTTGTTGTCGTGCCTACATTACAATATGCGTGTAATCGTGTACGCGAACGATGCGTAGTGCTCACGCAGAAGGAGACGAAGGACGAAGCACCACTCCAACGGATCGTCCCGCTGGGCACGCTTGGACGTCTCGCGATCGCTGTAGTAGACGGTCTTGAAGCGCCCGCCTGTCGGGAACTCCGTGAAGAAGGGTGACCAAGAAGGGAGGGGTGGGGAAAGCGGGAAAGGAAATAGAACAAAGGTAACGTTTATTTATATTGTGCTGCGCATTTGTTGTAGCTCGCCTTCGCTGCGTAGAGGATCGCAAAGTGCATTGTGTGAAGGAGGAGAAGCANGAGAANGAGGGAAAAAGGCAACTACAACAAAAACTCTTCGGGTGCATTATCTTGCAATGTACTCGTCGCGTTTGAATTGGCCGGTGAAATCGTTTCTTACTGTATACTGCGTTCTGTAGCTAATGTGAATTAAATGTCATGATGCTTATCCT]

[+] EMBL BX620503             [GTGTCGCTCTTGNNGGGGGAAAGGGGGGTGGCGTTGGCGGATATAGAGAGGCCAACAACACAAAGCACGGCGTCATAGCCACGGGCGGCACATTAGGGACTGATATGCGCTTAGTTGTTGTTTAGCAATATTTTCGTTAGTTGTGTACGTACACGCGTATTTTCCCAGCTTTCCTTTCTGTCCCCTTTTTTTGTTGTTGTTGTCGTGCCTACATTACAATATGCGTGTAATCGTGTACGCGAACGATGCGTAGTGCTCACGCAGAAGGAGACGAAGGACGAAGCACCACTCCAACGGATCGTCCCGCTGGGCACGCTTGGACGTCTCGCGATCGCTGTAGTAGACGGTCTTGAAGCGCCCGCCTGTCGGGAACTCCGTGAAGAAGGGTGACCAAGAAGGGAGGGGTGGGGAAAGCGGGAAAGGAAATAGAACAAAGGTAACGTTTATTTATATTGTGCTGCGCATTTGTTGTAGCTCGCCTTCGCTGCGTAGAGGATCGCAAAGTGCATTGTGTGAAGGAGGAGAAGCANGAGAANGAGGGAAAAAGGCAACTACAACAAAAACTCTTCGGGTGCATTATCTTGCAATGTACTCGTCGCGTTTGAATTGGCCGGTGAAATCGTTTCTTACTGTATACTGCGTTCTGTAGCTAATGTGAATTAAATGTCATGATGCTTATCCT]




>consensus_4849#1
GTGTCGCTCTTGNNGGGGGAAAGGGGGGTGGCGTTGGCGGATATAGAGAGGCCAACAACA
CAAAGCACGGCGTCATAGCCACGGGCGGCACATTAGGGACTGATATGCGCTTAGTTGTTG
TTTAGCAATATTTTCGTTAGTTGTGTACGTACACGCGTATTTTCCCAGCTTTCCTTTCTG
TCCCCTTTTTTTGTTGTTGTTGTCGTGCCTACATTACAATATGCGTGTAATCGTGTACGC
GAACGATGCGTAGTGCTCACGCAGAAGGAGACGAAGGACGAAGCACCACTCCAACGGATC
GTCCCGCTGGGCACGCTTGGACGTCTCGCGATCGCTGTAGTAGACGGTCTTGAAGCGCCC
GCCTGTCGGGAACTCCGTGAAGAAGGGTGACCAAGAAGGGAGGGGTGGGGAAAGCGGGAA
AGGAAATAGAACAAAGGTAACGTTTATTTATATTGTGCTGCGCATTTGTTGTAGCTCGCC
TTCGCTGCGTAGAGGATCGCAAAGTGCATTGTGTGAAGGAGGAGAAGCANGAGAANGAGG
GAAAAAGGCAACTACAACAAAAACTCTTCGGGTGCATTATCTTGCAATGTACTCGTCGCG
TTTGAATTGGCCGGTGAAATCGTTTCTTACTGTATACTGCGTTCTGTAGCTAATGTGAAT
TAAATGTCATGATGCTTATCCT

consensusID : consensus_4849#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [ATCGCAGAGGTTAAATCAGTGGCTTGGAGCATCATCCGCCATTAATTCCGAAACGAGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATTACCCCCAGAACGATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGATTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGACTGCGCGTGTGGACGTCCTGGCTCAAAAAGGACCAATACAAACCCGTCGCCGATGTGAAACGCCACCGAGGAACGCTGGAAGGGCGCTGAAACGAAATTCGATGCGGGGCCATTTTGCCGCATGAAAATGACATACGAAGACCCTTTCANTTGCGTT]

[+] EMBL AL696349             [ATCGCAGAGGTTAAATCAGTGGCTTGGAGCATCATCCGCCATTAATTCCGAAACGAGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATTACCCCCAGAACGATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGATTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGACTGCGCGTGTGGACGTCCTGGCTCAAAAAGGACCAATACAAACCCGTCGCCGATGTGAAACGCCACCGAGGAACGCTGGAAGGGCGCTGAAACGAAATTCGATGCGGGGCCATTTTGCCGCATGAAAATGACATACGAAGACCCTTTCANTTGCGTT]




>consensus_4849#2
ATCGCAGAGGTTAAATCAGTGGCTTGGAGCATCATCCGCCATTAATTCCGAAACGAGGAA
GTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGGATGAAGCGTTGTCGGACTT
CCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAA
GGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGA
GGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATTACCCCCAGAAC
GATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGA
TTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGA
GCAGCAGATCGAAGGACTGCGCGTGTGGACGTCCTGGCTCAAAAAGGACCAATACAAACC
CGTCGCCGATGTGAAACGCCACCGAGGAACGCTGGAAGGGCGCTGAAACGAAATTCGATG
CGGGGCCATTTTGCCGCATGAAAATGACATACGAAGACCCTTTCANTTGCGTT

consensusID : consensus_4849#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [CCCANGATTAAGTGGCTTGGAGCATCATCCGCCATTAATTCCGAACGAGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATCACCCCCAGAACGATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGACTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGGCTGCGCGTGTGGACGTCCTGGCTCAAAAGGAC]

[+] EMBL AL933268             [CCCANGATTAAGTGGCTTGGAGCATCATCCGCCATTAATTCCGAACGAGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATCACCCCCAGAACGATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGACTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGGCTGCGCGTGTGGACGTCCTGGCTCAAAAGGAC]




>consensus_4849#3
CCCANGATTAAGTGGCTTGGAGCATCATCCGCCATTAATTCCGAACGAGGAAGTAAAAGT
AAGTAGCCCCGACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCG
CATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTC
CTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGACACAT
ACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATCACCCCCAGAACGATCTATCT
CACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGACTCCAATCT
GAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGAT
CGAAGGGCTGCGCGTGTGGACGTCCTGGCTCAAAAGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4849#2      -------------------------------------------ATCGCAGAGGTTAAATC 17
consensus_4849#3      ----------------------------------------------CCCANGATTAA--- 11
consensus_4849#0      CGACCCACGCGTCCGGAAACGGTGCTGGCCGCCGTCTACAAGGCGCTGAACGACCATCAC 60
consensus_4849#1      -GTGTCGCTCTTGNNGGGGGAAAGGGGGGTGGCGTTGGCG-GATATAGAGAGGCCAACAA 58
                                                                         *   *    

consensus_4849#2      AGTGGCTTGGAGCATCATCCGCCATTAATTCCGAAA--CGAGGAAGTAAAAG-TAAGTAG 74
consensus_4849#3      -GTGGCTTGGAGCATCATCCGCCATTAATTCCGAA---CGAGGAAGTAAAAG-TAAGTAG 66
consensus_4849#0      GTCTACCTGGAGGGTA---CGCTGCTGAAGCCGAACATGGTGACGGCCGGCC-AGAGCTG 116
consensus_4849#1      CACAAAGCACGGCGTCAT-AGCCACGGGCGGCACATTAGGGACTGATATGCGCTTAGTTG 117
                                 *  *     **         *  *    *               **  *

consensus_4849#2      CCCCGACTATCGGAACATGAACATGGG-ATGAAGCGTTGTCG-GACTTC-CGGCTGCGCA 131
consensus_4849#3      CCCCGACTATCGGAACATGAACATGG--ATGAAGCGTTGTCG-GACTTC-CGGCTGCGCA 122
consensus_4849#0      CGCCAAGAAGCCGACCGCCCAGGAGAT-TGCGCTCGCCACCGTGACCGCACTGCGCCGCA 175
consensus_4849#1      T--TGTTTAGCAATATTTTCGTTAGTTGTGTACGTACACGCGTATTTTCCCAGCTTTCCT 175
                              * *             *               **      * * **    * 

consensus_4849#2      TCGAGC--ACTACCAGGAACGGTACGAGCC----GCTGAGCGAGGAGCTGGAGAAGGATC 185
consensus_4849#3      TCGAGC--ACTACCAGGAACGGTACGAGCC----GCTGAGCGAGGAGCTGGAGAAGGATC 176
consensus_4849#0      CCGTGCCGGCCGCCGTGCCCGGCGTCACCTTCCTGTCGGGCGGCCAGTCCGAGGAGGAGG 235
consensus_4849#1      TTCTGT---CCCCTTTTTTTGTTGTTGTT-----GTCGTGCCTACATTACAATATGCGTG 227
                          *    *  *       *             *  * **    *     *   *    

consensus_4849#2      TGTCCT---ACATGAA-GATCTACAACACGGGCGAAAAGGTGGT--GGTGCACAAGCACG 239
consensus_4849#3      TGTCCT---ACATGAA-GATCTACAACACGGGCGAAAAGGTGGT--GGTGCACAAGCACG 230
consensus_4849#0      CGTCCGTGAACCTGAG-CGCCATCAAC-CAGGTGCCGCTGCTGA--GACCGTGGGCCCTG 291
consensus_4849#1      TAATCGTGTACGCGAACGATGCGTAGTGCTCACGCAGAAGGAGACGAAGGACGAAGCACC 287
                          *    **  **         *   *    *     *  *             *   

consensus_4849#2      AGGGACACATACAGTCGCGCATCGTGTACTATC-TGATGAACATTCACATTACCCCCAGA 298
consensus_4849#3      AGGGACACATACAGTCGCGCATCGTGTACTATC-TGATGAACATTCACATCACCCCCAGA 289
consensus_4849#0      ACCTTCTCGTACGGTCGCGCCCTGCAGGCCTCGGTGCTGCGCGCCTGGGGCGGCAAGAAG 351
consensus_4849#1      ACTCCAACGGATCGTCCCGCTGGGCACGCTTGGACGTCTCGCGATCGCTGTAGTAGACGG 347
                      *      *  *  *** ***   *    *      *     *                  

consensus_4849#2      ACGATC-------TATCTCACCAGACACG----GAGAAAGCGAACACAA-CCTACAGGGA 346
consensus_4849#3      ACGATC-------TATCTCACCAGACACG----GAGAAAGCGAACACAA-CCTACAGGGA 337
consensus_4849#0      GAGAACGTGAAGGCCGCCCAGGAGGAGCT----GATCAAGCGCGCAAAGGCCAACAGCGA 407
consensus_4849#1      TC--TTGAAGCGCCCGCCTGTCGGGAACTCCGTGAAGAAGGGTGACCAAGAAGGGAGGGG 405
                                      *      *   *     **  *** *     *       ** * 

consensus_4849#2      C-TGATCGGTGGCGATTCCAAT--CTGAGCGAACGGGGCCGCCGCTACGC-GCAGGCACT 402
consensus_4849#3      C-TGATCGGTGGCGACTCCAAT--CTGAGCGAACGGGGCCGCCGCTACGC-GCAGGCACT 393
consensus_4849#0      TGCCGCCCTCGGCAAGTACGGCGGTGGTGTGGAGGGTGCCGCCGGTGCTG-GCAGCCTGT 466
consensus_4849#1      TGGGGAAAGCGGGAAAGGAAATAGAACAAAGGTAACGTTTATTTATATTGTGCTGCGCAT 465
                                **  *               *              *     ** *    *

consensus_4849#2      T----GCCAAGTACATCGACGA--GCAGCAGATCG--AAGGACTGCGCGTGTGGACGTCC 454
consensus_4849#3      T----GCCAAGTACATCGACGA--GCAGCAGATCG--AAGGGCTGCGCGTGTGGACGTCC 445
consensus_4849#0      TCGTCGCCAACCACGCTTACTAAGGCGTTCGTTCG--CTCCGCTCTGCATCTACATGAAC 524
consensus_4849#1      TTGTTGTAGCTCGCCTTCGCTGC-GTAGAGGATCGCAAAGTGCATTGTGTGAAGGAGGAG 524
                      *    *       *     *    *     * ***       *   *  *      *   

consensus_4849#2      TGGC--TCAAAAAGGACCAATACAAACCCGTCGCCG-ATGTGAAACGCCACCGAGGAACG 511
consensus_4849#3      TGGC--TCAAAA-GGAC------------------------------------------- 459
consensus_4849#0      TTGCATCCCACTAGAACACACCCTTTAGTACCACCCCACCTCCCCCTGTCCCTCGTCCCG 584
consensus_4849#1      AAGCANGAGAANGAGGGAAAAAGGCAACTACAACAAAAACTCTTCGGGTGCATTATCTTG 584
                        **     *                                                  

consensus_4849#2      CTGGAAGGGCGCTGAAACGAAATTCGATGCGGGGCCATTTTGCCGCATGAAAATG-ACAT 570
consensus_4849#3      ------------------------------------------------------------
consensus_4849#0      CCACATGCACACACACTCGCACAGTGGCAAACAACACTCCCGGAGCGGCAATCTTCGCAT 644
consensus_4849#1      CAATGTACTCGTCGCGTTTGAATTGGCCGGTGAAATCGTTTCTTACTGTATACT--GCGT 642
                                                                                  

consensus_4849#2      ACGAAGACCCTTTCANTTGCGTT--------------------- 593
consensus_4849#3      --------------------------------------------
consensus_4849#0      TCGGTTACTATGCTGAGTGTAAGTGAAGAATTAGCAGCAGCAGT 688
consensus_4849#1      TCTGTAGCTAATGTGAATTAAATGTCATGATGCTTATCCT---- 682