These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1100 fasta sequence [TCGTGCACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATAATGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCCATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCGACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCCATTGCCGCCGTCACCCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACACCAAGACGACGACCCACGCCGACCGCATGCGCCA-CAGCAAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTGAAGAGCAAAGCACATTAAAAGTAACACAAAAGCCGGTGAGTCAGAATCGCAAGAGGAAACAATCCGGAAAA] [+] EMBL CNS08G6U [TCGTGCACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATAATGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCCATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCGACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCCATTGCCGCCGTCACCCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACACCAAGACGACGACCCACGCCGACCGCATGCGCCA CAGCAAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTA ] [-] EMBL CNS08G6V [ AGGGGGTTTTGGCCGAAATCCGCGAAAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCCATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCGACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGGTGGAGTCGCCAACCTGGCCATTGCCGCCGTCACCCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACAACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACAGCAAGACGACGACCCACGCCGACCGCATGCGCCAGCAGC AGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTT TTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTGAAGAGCAAAGCACATTAAAAGTAACACAAAAGCCGGTGAGTCAGAATCGCAAGAGGAAACAATCCGGAAAA] consensusID : consensus_4850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1047 fasta sequence [CCGCGCTGTTCTTGCGCGAGCACAACCGCGTCGCCACGGCACTGGCCGCCCTGAACCGACACTGGGACGACGAGCGGCTGTACCAGGAGACGCGGCGTATCGTCGGCGCAGTGATGCAGAAGATTTTCTACAACGAGTACCTGCCGTCGATCGTGGGCCATAGCAAGGCACGCCAGTACGGGCTGCTCGACAGCCACGGGGAGCAGACGGACTTTTACAGTCCCGACGTGAAGCCTGCCGTTTTTAACGAACTGTCCGGGGCAGCTTTCCGTTTCGGCCATTCTACCGTGGATGGAGCGTTTTTGATCCAGCATCGCCATCGCCGCACGGAGCTGGTACCGATTCAGGAAGTCTTCCTGAACCCGTCCCGTCTGCTGCAGCGCTCGTTTTTCGACGACTTTCTCTTCTCGC-TGATGGATCAGCCGCAGCAGCAGCTGGACGATTCCATCACGTTCGGGGTTGACGCGGTTGCTGTTTGCGGGCCGCAACCCGTTCGGTTCGGATCTGGCGTCGCTCAACATACAGCGCGGCCGGGATCATGCGCTGCGCCCGTACAACGACTACCGGAGCTGGGCCGGCCTGGAGCGACTCACTAGCTTCCGAGCAGTTCCGGTCCGGTCGGTGCCCGGCTCGCCAGCGTGTACGAGTTCCCGGACGATGTGGACCTGTGGGTGGGCGGACTGCTGGAGCCCCCGACGCAGGATGGGGCACTGTTTGGCGAAACGTTCGCCGCCATCATTAGCGAACTGAGCAAGGTGTCGCTCGCCTCGGTCATCTGCGCCAACCTCGACCAGGCGGACGGGTTTTCCGCGCCCCGGGATGCGTTTAGACAGCCGAGCGAGCATAACCCGCCCGTCCCGTGCCAGACGCTAGTCGGGATGGATCTGTCCGCCTGGAGGGGTCACTAGCGGGGAGGGGTGAATTGTTTTATGTACTGCGTTTGTAGTATGGCAGGGTGTATTTGTGTAGTTTCGTGTTTTAAAGTAAGTGTTTCTGGAAACACGTATTTGTAGTTGGTAGTGTTGTGTTCGAATAAAAGATGTGCTG] [+] EMBL BM606283 [CCGCGCTGTTCTTGCGCGAGCACAACCGCGTCGCCACGGCACTGGCCGCCCTGAACCGACACTGGGACGACGAGCGGCTGTACCAGGAGACGCGGCGTATCGTCGGCGCAGTGATGCAGAAGATTTTCTACAACGAGTACCTGCCGTCGATCGTGGGCCATAGCAAGGCACGCCAGTACGGGCTGCTCGACAGCCACGGGGAGCAGACGGACTTTTACAGTCCCGACGTGAAGCCTGCCGTTTTTAACGAACTGTCCGGGGCAGCTTTCCGTTTCGGCCATTCTACCGTGGATGGAGCGTTTTTGATCCAGCATCGCCATCGCCGCACGGAGCTGGTACCGATTCAGGAAGTCTTCCTGAACCCGTCCCGTCTGCTGCAGCGCTCGTTTTTCGACGACTTTCTCTTCTCGC TGATGGATCAGCCGCAGCAGCAGCTGGACGATTCCATCACGTTCGGGGTTGACGCGGTTGCTGTTTGCGGGCCGCAACCCGTTCGGTTCGGATCTGGCGTCGCTCAACATACAGCGCGGCCGGGATCATGCGCTGCGCCCGTACAACGACTACCGGAGCTGGGCCGGCCTGGAGCGACTCACTAGCTTCCGAGCAGTTCCGGTCCGGTCGGTGCCCGGCTCGCCAGCGTGTACGAGTTCCCG ] [+] EMBL BX467411 [ ggcaagaaTCGCGCACGA GGATCAGCCGCAGCAGCAGCTGGACGATTCCATCACGTTC GGGTTGACGCGGTTGCTGTTTGCGGGCCGCAACCCGTTCGGTTCGGATCTGGCGTCGCTCAACATACAGCGCGGCCGGGATCATGCGCTGCGCCCGTACAACGACTACCGGAGCTGGGCCGGCCTGGAGCGACTCACTAGCTT CGAGCAGTT CGGTCCGGTCGGTGCCCGGCTCGCCAGCGTGTACGAGTTCCCGGACGATGTGGACCTGTGGGTGGGCGGACTGCTGGAGCCCCCGACGCAGGATGGGGCACTGTTTGGCGAAACGTTCGCCGCCATCATTAGCGAACTGAGCAAGGTGTCGCTCGCCTCGGTCATCTGCGCCAACCTCGACCAGGCGGACGGGTTTTCCGCGCCCCGGGATGCGTTTAGACAGCCGAGCGAGCATAACCCGCCCGTCCCGTGCCAGACGCTAGTCGGGATGGATCTGTCCGCCTGGAGGGGTCACTAGCGGGGAGGGGTGAATTGTTTTATGTACTGCGTTTGTAGTATGGCAGGGTGTATTTGTGTAGTTTCGTGTTTTAAAGTAAGTGTTTCTGGAAACACGTATTTGTAGTTGGTAGTGTTGTGTTCGAATAAAAGATGTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4850#0 TCGTGCACTGCTCG-ACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCT 59 consensus_4850#1 CCGCGCTGTTCTTGCGCGAGCAC---AACCGCGTCGCCA-CGGCACTGGCCGCCCTGAAC 56 ** ** * ** * *** ** * * ** * **** *** * * consensus_4850#0 C--CCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATAATGCTGATGGG 117 consensus_4850#1 CGACACTGGGACGACGAGCGGCTGTACCAGGAGACGCGGCGTATCGTCGGCGCAGTGATG 116 * * * ** * * * * *** * ***** * ** * * consensus_4850#0 CAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGG--AGAACAACCAGAACCTG 175 consensus_4850#1 CAGAAGATTTTCTACAACGAGTACCTGCCGTCGATCGTGGGCCATAGCAAGGCACGCCAG 176 ** * * * ** *** * ** * * *** ** * consensus_4850#0 GAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTG 235 consensus_4850#1 TACGGGCTGCTCGACAGCCACGGGGAGCAGACGGACTTTTACAGTCCCGACGTGAAGCCT 236 * ******* ** * * ** * ** *** ** * * * * consensus_4850#0 GCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCC--CCGGCCCGTGCCGGTG 293 consensus_4850#1 GCCG---TTTTTAACGAACTGTCCGGGGCAGCTTTCCGTTTCGGCCATTCTACCGTGGAT 293 **** * ** * *** *** * * *** * ** * ** consensus_4850#0 CGATCGCCCC--GCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAA 351 consensus_4850#1 GGAGCGTTTTTGATCCAGCATCGCCATCGCCGCACGGAG--CTGGTACCGATTCAG-GAA 350 ** ** * *** **** * ** * ** * *** ** * * * *** consensus_4850#0 GACCTCCTTCTTCCAGGCCCTGTCCATCCCGAC-CAAGATTTCCAAGGGTACGATTGAAA 410 consensus_4850#1 GTCTTCCTGAACCC--GTCCCGTCTGCTGCAGCGCTCGTTTTTCGACGACTTTCTC---- 404 * * **** ** * ** *** * * * * *** * * * * consensus_4850#0 TCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGC 470 consensus_4850#1 TTCTCGCTGATGGATC--------AGCCGCAGCAGCAGCTGGACGATTCC---ATCACG- 452 * ** ** * * ***** * ** * * ** **** **** consensus_4850#0 TGCTCGACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACG 530 consensus_4850#1 --TTCGGG--GTTGACGCGGTTGCTGTT----TGCGGGCCGCA-ACCCGTTCGGT-TCGG 502 *** * *** * ** *** * *** * *** * ** *** * * consensus_4850#0 ATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCA 590 consensus_4850#1 ATCTGGCGTCGCTCAACATACAGCGCGGCC--GGGATCATG-CGCTGCGCCCGTACAACG 559 ** ** *** ** * * * ** * **** * ** * * * * * consensus_4850#0 AGTTCCAG-GCTGGAGTCGCCAACCTGGCCATTGCCGCCGTCACCCGAGGTTGAGTTCAA 649 consensus_4850#1 ACTACCGGAGCTGG----GCCGGCCTGGAGCGACTCACTAGCTTCCGAG--CAGTTCCGG 613 * * ** * ***** *** ***** * * * ***** * * consensus_4850#0 GGAGGCCGAAAC--GGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACG 707 consensus_4850#1 TCCGGTCGGTGCCCGGCTCGCCAGCGTGTACGAGTTCCCGGACGATGTGGACCTGTGGGT 673 ** ** * ** ** * * *** * * * *** consensus_4850#0 GCAACGACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCC 767 consensus_4850#1 GGGCGGACTGCTGGAGCCCCCGACGCAGGATGGGGCACTGTTTGGCGAAACG-----TTC 728 * ******* ** *** * *** *** * ** * * * consensus_4850#0 GAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACACCAA 827 consensus_4850#1 GCCGCCATCATTAGCGAACTGAGCA-AGGTGTCGCTCGCCTCGGTCATCTGCGCCAACCT 787 * ** * ** * * ** *** ** *** * * **** ** * consensus_4850#0 GACGACGACCCACGCCGACCGCATGCGCCACAGCAAG-GTCGGTTGTTCCCAGACGGTGT 886 consensus_4850#1 --CGACCAGGCGGACGGGTTTTCCGCGCCCCGGGATGCGTTTAGACAGCCGAGCGAGCAT 845 **** * * * * ***** * * * * ** ** ** * * consensus_4850#0 GGTTC-CCTGAGCTATATCT-ACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGT 944 consensus_4850#1 AACCCGCCCGTCCCGTGCCAGACGCTAGTCGGGA---TGGATCTGTCCGCCTGGAGGGGT 902 * ** * * * * ** * * *** ** * *** ** * * ** consensus_4850#0 CAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAAT 1004 consensus_4850#1 CACTAGCGGGGAGGGGTGAATTGTTTTATG-----TACTGCGTTTGTAGTATGGCAGG-- 955 ** ***** ** *** * * * * * **** * ** consensus_4850#0 ACGTATTTTTCTGTGAAACCAACTGAAGAGCAAAGCACATTAAAAGTAACACA---AAAG 1061 consensus_4850#1 --GTGTATTTGTGTAGTTTCGTGTTTTAAAGTAAGTGTTTCTGGAAACACGTATTTGTAG 1013 ** * *** *** * * * *** * * ** * ** consensus_4850#0 CCGGTGAGTCAGAATCGCAAGAGGAAACAATCCGGAAAA 1100 consensus_4850#1 TTGGTAGTGTTGTGTTCGAATAAAAGATGTGCTG----- 1047 *** * * ** * * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||