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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1192 fasta sequence
[GATCCCCGNGGTTNAATAACTATTTTAAATATGTAACTTAGAAATGAAATGTTAATCGTTTTAAAATATATCTAGTTTTTTAAGAAATGAATTTAATTTAGCTTATTTATTTTATTAAGTTAATTTTTTAATTTAATAATTAAATAAAGTAATATTTATAAGGGATGAGACTTTAAACACTAAAATATNTTACTATTTCTTCTCGATACATTCTCTCAAACTTAACACTATAAGCCTTAAACAAATAGCTATTACTTTAATACACATTCGTNCACTACACTCNACTTCCANCTACTAACNCACCACACTTACTTNCACACTTCCACACTCTACACACTTTACCTCTCAACTCTCAACACACTTCTTCAACAACTACTTCTANTTACCACTTACCNCCACAACTACTCTACACGCCTAACACCTCTACCNNGACACTTACACAANACTACAANGCCTACANTACTTAACNACACTCTATANCTNACNTACAACANGTCTAAAACTTTAACACTTCTGACACTAACGGGCATACTAAACTAAACTGGAACACNCCAACAATTCNCCCGGGCCACACGAACTTCGACGNGANCTAAACTAATTACTNCCCNAACCCCCCTCAGGGCTATCTTAAAGAACCAAACAGANAACCACCCACTTAGTTACCTCACTCATCTACTCATGTCACTTATCATCTAATATTCTAAACAACAACAGGTTTCTTAAAAGAGCTCCTAGGGGGCCCCCAAGCCTTATGGAAACGAGTTATATTNTCCAAACANCACGGTAGGNGCACGCTGGCTCTGCGGATCTAAATTATTTTACTGGGACCGCCTGGTCTGGCCTGAAANCGCGGACCTTACAGCCCCCACCTTAAAACCCNTCCCAAAAAGCTGAAGGCTNCCCTATCGNTCATACACCGTTCTGGCAACACGGCGTCCNTTGTGGCCTTANCTTGCACACCGCTGGGGCCTCTNGCCACAACCTGTACAGCAACTAAACTTAATTACCCTGGCTTCATCATGNGTACATNTATCAGAAAAGCANCCTTACANAAGTTTACTTTAACAGNAAAAGCNCGTCNGTCTCAACNCTGCTANACTGANAACGGGATCATGAAAGACAANACGGCCCGTGACACAACAACTTTATCTAACACGCTCATAAACANACACGGAACCGAGAAGACAAGGAN]
[+] EMBL AL692545 [GATCCCCGNGGTTNAATAACTATTTTAAATATGTAACTTAGAAATGAAATGTTAATCGTTTTAAAATATATCTAGTTTTTTAAGAAATGAATTTAATTTAGCTTATTTATTTTATTAAGTTAATTTTTTAATTTAATAATTAAATAAAGTAATATTTATAAGGGATGAGACTTTAAACACTAAAATATNTTACTATTTCTTCTCGATACATTCTCTCAAACTTAACACTATAAGCCTTAAACAAATAGCTATTACTTTAATACACATTCGTNCACTACACTCNACTTCCANCTACTAACNCACCACACTTACTTNCACACTTCCACACTCTACACACTTTACCTCTCAACTCTCAACACACTTCTTCAACAACTACTTCTANTTACCACTTACCNCCACAACTACTCTACACGCCTAACACCTCTACCNNGACACTTACACAANACTACAANGCCTACANTACTTAACNACACTCTATANCTNACNTACAACANGTCTAAAACTTTAACACTTCTGACACTAACGGGCATACTAAACTAAACTGGAACACNCCAACAATTCNCCCGGGCCACACGAACTTCGACGNGANCTAAACTAATTACTNCCCNAACCCCCCTCAGGGCTATCTTAAAGAACCAAACAGANAACCACCCACTTAGTTACCTCACTCATCTACTCATGTCACTTATCATCTAATATTCTAAACAACAACAGGTTTCTTAAAAGAGCTCCTAGGGGGCCCCCAAGCCTTATGGAAACGAGTTATATTNTCCAAACANCACGGTAGGNGCACGCTGGCTCTGCGGATCTAAATTATTTTACTGGGACCGCCTGGTCTGGCCTGAAANCGCGGACCTTACAGCCCCCACCTTAAAACCCNTCCCAAAAAGCTGAAGGCTNCCCTATCGNTCATACACCGTTCTGGCAACACGGCGTCCNTTGTGGCCTTANCTTGCACACCGCTGGGGCCTCTNGCCACAACCTGTACAGCAACTAAACTTAATTACCCTGGCTTCATCATGNGTACATNTATCAGAAAAGCANCCTTACANAAGTTTACTTTAACAGNAAAAGCNCGTCNGTCTCAACNCTGCTANACTGANAACGGGATCATGAAAGACAANACGGCCCGTGACACAACAACTTTATCTAACACGCTCATAAACANACACGGAACCGAGAAGACAAGGAN]
consensusID : consensus_4860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 884 fasta sequence
[CCGGACACGATGTCGAACAAGATTGCAATCCTCCTGGCTGTGCTGGTTGCGGTAAAAATTGCCTGCGCGGAGGGCGCAGGCCAACCAGCGCCATCGGCTTGTAAGACCGAGCCCGAGTTTCTCCCCGCGACCCCGGTACGCCGTTGGCCAACGCATTGTCGGTGGGTTTCGAGATCGAGCGTGTCGGATGCACCGTATCAGGTGTCGCTCCAGTACAACAAGCGCCACAACTGCGGTGGTTCCGTCCTGTCCAGCAAGTGGGTGCTTACGGCCGCTCACTGCACCGCCGGTCCTCGACCTCCAGCTTGACCGTGCGCCTGGGAACATCGCGTCACGCTTCGGGAGGAACCGATGGTTCGTGTTGCTCGCGTCGTGCAGCATCCACAAATTACGATAGCAGCAGCATCGATTTCGACTACTCCCTGCTGGAGCTGGAAGACGAACTTACCTTCAGCGATGCGGTGCAGCC-GGTTGGTCTGCCGAAACAGGACGAATCCGGTGAAGGATGGAACCATGACGACTGTGTCTGGCTGGGGCAACACCCAGAGTGCGGCCGAATCGAATGCCGTTCTGCGGGCTGCCAACGTGCCGACCGTTAACCAAAAGGAGTGCAACAAAGCCTACAGTGACTCCGGTGGTCCGCTGGTTGCTGATGGCAAGCTGGTTGGTGTGGTTTCGTGGGGCTACGGTTGCGCTCAGGCCGGTTATCCGGGAGTGTACTCGCGGGTTGCAGTCGTCCGCGACTGGGTGCGCGAGAACAGTGGAGTTTAAAACGGATCTCGGCTTCAAAACGGTACTGGATTTTGGATTTAAACGAAAGTCATCGCTACAACAGAACAAATAAAAGAACATTGATGAAAACGCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BM592658 [CCGGACACGATGTCGAACAAGATTGCAATCCTCCTGGCTGTGCTGGTTGCGGTAAAAATTGCCTGCGCGGAGGGCGCAGGCCAACCAGCGCCATCGGCTTGTAAGACCGAGCCCGAGTTTCTCCCCGCGAC ]
[+] EMBL CNS09LYS [ aAACCAGCGCCATCGGCTTGTAAGACCGAGCCCGAGTTTCTCCCCGCGACCCCGGTACGCCGTTGGCCAACGCATTGTCGGTGGGTTTCGAGATCGAGCGTGTCGGATGCACCGTATCAGGTGTCGCTCCAGTACAACAAGCGCCACAACTGCGGTGGTTCCGTCCTGTCCAGCAAGTGGGTGCTTACGGCCGCTCACTGCACCGCCGGTCCTCGACCTCCAGCTTGACCGTGCGCCTGGGAACATCGCGTCACGCTTCGGGAGGAACCGATGGTTCGTGTTGCTCGCGTCGTGCAGCATCCACAAATTACGATAGCAGCAGCATCGATTTCGACTACTCCCTGCTGGAGCTGGAAGACGAACTTACCTTCAGCGATGCGGTGCAGCC GGTTGGTCTGCCGAAACAGGACGAATCCGGTGAAGGATGGAACCATGACGACTGTGTCTGGCTGGGGCAACACCCAGAGTGCGGCCGAATCGAATGCCGTTCTGCGGGCTGCCAACGTGCCGACCGTTAACCAAAAGGAGTGCAACAAAGCCTACAGTGACTCCGGTGGTCCGCTGGTTGCTGATGGCAAGCTGGTTGGTGTGGTTTCGTGGGGCTACGGTTGCGCTCAGGCCGGTTATCCGGGAGTGTACTCGCGGGTTGCAGTCGTCCGCGACTGGGTGCGCGAGAACAGTGGAGTTTAAAACGGATCTCGGCTTCAAAACGGTACTGGATTTTGGATTTAAACGAAAGTCATCGCTACAACAGAACAAATAAAAGAACATTGATGAAAACGCAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CNS09LYT [ CCTGCTGGAGCTGGAAGACGAACTTACCTTCAGCGATGCGGTGCAGCCGGGTTGGTCTGCCGAAACAGGACGAAT CGGTGAAGGATGGAACCATGACGACTGTGTCTGGCTGGGGCAACACCCAGAGTGCGGCCGAATCGAATGCCGTTCTGCGGGCTGCCAACGTGCCGACCGTTAACCAAAAGGAGTGCAACAAAGCCTACAGTGACTCCGGTGGTCCGCTGGTTGCTGATGGCAAGCTGGTTGGTGTGGTTTCGTGGGGCTACGGTTGCGCTCAGGCCGGTTATCCGGGAGTGTACTCGCGGGTTGCAGTCGTCCGCGACTGGGTGCGCGAGAACAGTGGAGTTTAAAACGGATCTCGGCTTCAAAACGGTACTGGATTTTGGATTTAAACGAAAGTCATCGCTACAACAGAACAAATAAAAGAACATTAATc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4860#0 GATCCCCGNGGTTNAATAACTATTTTAAATATGTAACTTAGAAATGAAATGTTAATCGTT 60
consensus_4860#1 ------------------------------------------------------------
consensus_4860#0 TTAAAATATATCTAGTTTTTTAAGAAATGAATTTAATTTAGCTTATTTATTTTATTAAGT 120
consensus_4860#1 ------------------------------------------------------------
consensus_4860#0 TAATTTTTTAATTTAATAATTAAATAAAGTAATATTTATAAGGGATGAGACTTTAAACAC 180
consensus_4860#1 ------------------------------------------------------------
consensus_4860#0 TAAAATATNTTACTATTTCTTCTCGATACATTCTCTCAAACTTAACACTATAAGCCTTAA 240
consensus_4860#1 ------------------------------------------------------------
consensus_4860#0 ACAAATAGCTATTACTTTAATACACATTCGTNCACTACACTCNACTTCCANCTACTAACN 300
consensus_4860#1 ---------------------CCGGACACG-ATGTCGAACAAGATTGCAATCCTCCTGGC 38
* * ** ** * * * * * *
consensus_4860#0 CACCACACTTACTTNCACACTTCCACACTCTACACACTTTACCTCTCAACTCTCAACACA 360
consensus_4860#1 TGTGCTGGTTGCGGTAAAAATTGC---CTGCGCGGAGGGCGCAGGCCAACCAGCGCCATC 95
** * * * ** * ** * * * **** * **
consensus_4860#0 CTTCTTCAACAACTACTTCTANTTACCACTTACCNCCACAACTACTCTACACGCCTAACA 420
consensus_4860#1 GGCTTGTAAGACCGAGCCCGAGTTTCTCCCCGCGACCCCGG-TACGCCGT-TGGCCAACG 153
* ** * * * * * ** * * * ** * *** * * * ***
consensus_4860#0 CCTCTACCNNGACACTTACACAANACTACAANGCCTACANTACTTAACNACACTCTATAN 480
consensus_4860#1 CAT-TGTCGGTGGGTTT---CGAGATCG-AGCGTGTCGGATGCACCGTATCAGG-TGTCG 207
* * * * ** * * * * * * * * ** * *
consensus_4860#0 CTNACNTACAACANGT-CTAAAACTTTAACACTTCTGACACTAACGGGCATACTAAACTA 539
consensus_4860#1 CTCCAGTACAACAAGCGCCACAACTGCGGTGGTTCCGTC-CTGTCCAGCA-AGTGGGT-- 263
** ******* * * * **** *** * * ** * *** * *
consensus_4860#0 AACTGGAACACNCCAACAATTCNCCCGGGCCACACGAACTTCGACGNGANC-TAAACTAA 598
consensus_4860#1 -GCTTACGGCCGCTCACTGCACCGCCGGTCCTC--GACCTCCAGCTTGACCGTGCGCCTG 320
** * * ** * **** ** * ** ** * * ** * * *
consensus_4860#0 TTACTNCCCNAACCCCCCTCAGGGCTATCTTAAAGAACCAAACAGANAACCACCCACTTA 658
consensus_4860#1 GGAACATCGCGTCACGCTTCGGGAGGAACC-GATGGTTCGTGTTGCTCGCGTCGTGCAGC 379
* * * * * ** ** * * * * * * * * *
consensus_4860#0 GTTACCTCACTCATCTACTCATGTCACTTATCATCTAATATTCTAAACAACAACAGGTTT 718
consensus_4860#1 ATCCACAAATTACGATAGCAGCAGCATCGATT-TCGACTACTCCCTGCTGGAGCTGGA-- 436
* * * * ** ** ** ** * ** ** * * * **
consensus_4860#0 CTTAAAAGAGCTCCTAGGGGGCCCCCAAGCCTTATGGAAACGAGTTATATTNTCCAAACA 778
consensus_4860#1 ---AGACGAACTTAC------CTTCAGCGATGCGGTGCAGCCGGTTGGTCTGCCGAAACA 487
* * ** ** * * * * * * *** * * *****
consensus_4860#0 NCACGG--TAGGNGCACGCTGGCTCTGCGGATCTAAATTATTTTACTGGGAC--CGCCTG 834
consensus_4860#1 GGACGAATCCGGTGAAGGATGGAACCATGA--CGACTGTGTCTGGCTGGGGCAACACCCA 545
*** ** * * * *** * * * * * * * ***** * * **
consensus_4860#0 GTCTGGCCTGAAANCGCGGACCTTACAGCCCCCACCTTAAAACCCNTCCCAAAAAGCTGA 894
consensus_4860#1 GAGTGCGGCCGAATCGAATGCCGTTCTGCGGGCTGCCAACGTGCCGACCGTTAA--CCAA 603
* ** ** ** ** * * ** * * * ** ** ** * *
consensus_4860#0 AGGCTNCCCTATCGNTCATACACCG-TTCTGGCAACACGGCGTCCNTTGTGGCCTTANCT 953
consensus_4860#1 AAGGAGTGCAACAAAGCCTACAGTGACTCCGGTGGTCCGCTGGTTGCTGA-----TGGCA 658
* * * * * **** * ** ** ** * ** * *
consensus_4860#0 TGCACACCGCTGGGGCCTCTNGCCACAACCTGTACAGCAACTAAACTTAATTACCCTGGC 1013
consensus_4860#1 AGCTGGTTGGTGTGGTTTCGTGGGGCTACGGTTGCG----CTCAGGCCGGTTATCCGGGA 714
** * ** ** ** * * ** * * ** * *** ** **
consensus_4860#0 TTCATCATGNGTACATNTATCAGAAAAGCANCCTTACANAAGTTTACTTTAACAGNAAAA 1073
consensus_4860#1 GTGTACTCGCGGGTTGCAGTCGTCCGCGACTGGGTGCGCGAGAACAGTGGAGTTTAAAAC 774
* * * * ** * * * ** * * * ***
consensus_4860#0 GCNCGTCNGTCTCAACNCTGCTANACTGANAACGGGATCATGAAAGACAANACGGCCCGT 1133
consensus_4860#1 GGATCTCGGCTTCAAAACGG---TACTGGATTTTGGATT-TAAACGAAAGTCATCGCTAC 830
* ** * **** * * **** **** * ** ** * *
consensus_4860#0 GACACAACAACTTTATCTAACACGCTCATAAACANACACGGAACCGAGAAGACAAGGAN 1192
consensus_4860#1 AACAGAACAAATAAA---AGAACATTGATGAAAACGCAAAAAAAAAAAAAAAAAAAA-- 884
*** ***** * * * ** * ** ** * ** ** * ** * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||