These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1007 fasta sequence [CCGCCCACGCGTCCGAGCTCGCCTACTTGATGGTGGTGGTGGTGGTCTGCCTGTTTGGCATTGGCTGCATCGCCGCGACCGGACTACCGGGATCGGCTGCCAAGAGCGCAGGGGGCCACCAGACGGGCGACGTGTTCACCAGCTCGTTTCTGGTGCGGTTTAAGCGCAGCCTGGACAAGCAGCTGGTACACGAGATTGCCTCGCGGAATGGATTCCAAAATTTGGGCGAGCTTCCTGGCAGCAATGGTAAGGAGTTTCACTTCAAGCACACCACCCTGCCGTTGGTACGCACCAGGCGAAGCATCTCCCATACGCGTGTGCTTAAAAAGGAACCACTGATACACACCGCAATACAGCAGTCCGGATTTAAGCGCGTCAAGCGCGGCTTCCGCCATGCCGTCCCGCTGAACTACATCCCGGACAAGGCGCCCGGGTACGGTGGCGAGAATGTGCCGACCGATCCGTACTTCCCGTTCCAGTGGTACTTGAAAAACACGGGACAAAACGGCGGCAAGGCGAAGCTCGACCTCAACGTGCTGGCTGCGTGGGACCAAGGCATTACCGGGAAAAACATTACCACCGCCATCATGGGACGACGGCGTTGATTACATGCACGCGGATCTGAAGTTTAATTATAATGCCGAAGCGAGTTACGATTTTAGCAGCAACGATCCGTTCCCTTACCCACGGTACACGGACGATTGGTTCAATAGCCATGGCACACGGTGCGCCGGTGAGGTAGCCGCCGCCCGGGACAACGGCATCTGCGGGGTGGGCGTTGCGTACGATTCGAAGATCGCCGGCATCCGAATGCTGGACCAGCCGTACATGACCGATCTGATCGAGGCGAACTCGATGGGGCACGAGCCGCACAAGATCCACATCTACAGCGCGTCCTGGGGCCCGACCGACGACGGCAAAACGGTGGACGGCCCACGGAACGCGACGATGCGCGCGATCGTACAGGGTGTCAACGAGGGCCGGAACGGGCTGGGCAACATCTACGT] [+] EMBL BM656191 [CCGCCCACGCGTCCGAGCTCGCCTACTTGATGGTGGTGGTGGTGGTCTGCCTGTTTGGCATTGGCTGCATCGCCGCGACCGGACTACCGGGATCGGCTGCCAAGAGCGCAGGGGGCCACCAGACGGGCGACGTGTTCACCAGCTCGTTTCTGGTGCGGTTTAAGCGCAGCCTGGACAAGCAGCTGGTACACGAGATTGCCTCGCGGAATGGATTCCAAAATTTGGGCGAGCTTCCTGGCAGCAATGGTAAGGAGTTTCACTTCAAGCACACCACCCTGCCGTTGGTACGCACCAGGCGAAGCATCTCCCATACGCGTGTGCTTAAAAAGGAACCACTGATACACACCGCAATACAGCAGTCCGGATTTAAGCGCGTCAAGCGCGGCTTCCGCCATGCCGTCCCGCTGAACTACATCCCGGACAAGGCGCCCGGGTACGGTGGCGAGAATGTGCCGACCGATCCGTACTTCCCGTTCCAGTGGTACTTGAAAAACACGGGACAAAACGGCGGCAAGGCGAAGCTCGACCTCAACGTGCTGGCTGCGTGGGACCAAGGCATTACCGGGAAAAACATTACCACCGCCATCATGGGACGACGGCGTTGATTACATGCACGCGGATCTGAAGTTTAATTATAATGCCGAAGCGAGTTACGATTTTAGCAGCAACGATCCGTTCC ] [+] EMBL BM633120 [ ccgTGGTACACACCGCAATACAGCAGTCCGGATTTAAGCGCGTCAAGCGCGGCTTCCGCCATGCCGTCCCGCTGAACTACATCCCGGACAAGGCGCCCGGGTACGGTGGCGAGAATGTGCCTACCGATCCGTACTTCCCGTTCCAGTGGTACTTGAAAAACACGGGACAAAACGGCGGCAAGGCGAAGCTCGACCTCAACGTGCTGGCTGCGTGGGACCAAGGCATTACCGGGAAAAACATTACCACCGCCATCAT GGACGACGGCGTTGATTACATGCACGCGGATCTGAAGTTTAATTATAATGCCGAAGCGAGTTACGATTTTAGCAGCAACGATCCGTTCCCTTACCCACGGTACACGGACGATTGGTTCAATAGCCATGGCACACGGTGCGCCGGTGAGGTAGCCGCCGCCCGGGACAACGGCATCTGCGGGGTGGGCGTTGCGTACGATTCGAAGATCGCCGGCATCCGAATGCTGGACCAGCCGTACATGACCGATCTGATCGAGGCGAACTCGATGGG ] [+] EMBL BX610558 [ GGTTCAATAGCCATGGCACACGGTGCGCCGGTGAGGTAGCCGCCGCCCGGGACAACGGCATCTGCGGGGTGGGCGTTGCGTACGATTCGAAGATCGCCGGCATCCGAATGCTGGACCAGCCGTACATGACCGATCTGATCGAGGCGAACTCGATGGGGCACGAGCCGCACAAGATCCACATCTACAGCGCGTCCTGGGGCCCGACCGACGACGGCAAAACGGTGGACGGCCCACGGAACGCGACGATGCGCGCGATCGTACAGGGTGTCAACGAGGGCCGGAACGGGCTGGGCAACATCTACGT] consensusID : consensus_4862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [CCGGAAAGGTTGGCCGCGCACTTCCGTCGCTTATCGGGCCCGTGTCTGTGCCTGTATGTGTGTGTGTGGATAAGTGAAAGCACATTTGGAAAATTTTAAAAGCACAGCAGGGAAAACAGTTCTCCACCAGCTCCGAACGCAATCGGAGGCAATGGCGGCTTAACGGAGGTTGTAGTGCTGCTGGTGCTGGTGCTGATTGTACGGGAAGTGACGCATATCGCTCGGAGAGCGCCTGCCAAATGGGGCCTCGGTTTAGTGCAAATCAGTAGCTGTGCGTGTGCTTTGTAACGGGAAGCAGAAGAAGCAGGAGCGGCCCTTCCGAACAAACCTGCACCGGAAGCACGGAGACACACAAAAACCGAAAGGGGGACACGCGCGAGCAGCCGAGGATACGAGTTTAAAGGGCAAAAGTTACAGCATCAACGCCAACCATGTTCGTGAAGAAGCTCGCCTACTTGATGGTGGGTGGTGGCGGTCTGCCTGTTTGGCATTGGCTGCATCGCGGCGACCGGACTGCCGGGATCGGCTGCCA] [+] EMBL BM636666 [CCGGAAAGGTTGGCCGCGCACTTCCGTCGCTTATCGGGCCCGTGTCTGTGCCTGTATGTGTGTGTGTGGATAAGTGAAAGCACATTTGGAAAATTTTAAAAGCACAGCAGGGAAAACAGTTCTCCACCAGCTCCGAACGCAATCGGAGGCAATGGCGGCTTAACGGAGGTTGTAGTGCTGCTGGTGCTGGTGCTGATTGTACGGGAAGTGACGCATATCGCTCGGAGAGCGCCTGCCAAATGGGGCCTCGGTTTAGTGCAAATCAGTAGCTGTGCGTGTGCTTTGTAACGGGAAGCAGAAGAAGCAGGAGCGGCCCTTCCGAACAAACCTGCACCGGAAGCACGGAGACACACAAAAACCGAAAGGGGGACACGCGCGAGCAGCCGAGGATACGAGTTTAAAGGGCAAAAGTTACAGCATCAACGCCAACCATGTTCGTGAAGAAGCTCGCCTACTTGATGGTGGGTGGTGGCGGTCTGCCTGTTTGGCATTGGCTGCATCGCGGCGACCGGACTGCCGGGATCGGCTGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4862#0 CCGCCCACGCGTCCGAGCTCGCCTACTTGATGGTGGTGGTGGTGGTCTGCCTGTTTGGCA 60 consensus_4862#1 ------------------------------------------------------------ consensus_4862#0 TTGGCTGCATCGCCGCGACCGGACTACCGGGATCGGCTGCCAAGAGCGCAGGGGGCCACC 120 consensus_4862#1 ------------------------------------------------------------ consensus_4862#0 AGACGGGCGACGTGTTCACCAGCTCGTTTCTGGTGCGGTTTAAGCGCAGCCTGGACAAGC 180 consensus_4862#1 ------CCGGAAAGGTTGGCCGCGCACTTCCGTCGC----TTATCG-GGCCCGTGTCTGT 49 ** * * * ** * *** * ** * * ** *** * * consensus_4862#0 AGCTGGTACACGAGATTGCCTCGCGGAATGGATTCCAAAATTTGGGCGAGCTTCCTGGCA 240 consensus_4862#1 GCCTG---TATGTGTGTGTGTGGATAAGTGAAAGC--ACATTTGGAAAATTTTAAAAGCA 104 *** * * * ** * * * ** * * * ****** * ** *** consensus_4862#0 GCAATGGTAAGGAGTTTCACTTCAAGCACACCACCCTGCCGTTGGTACGCACCAGGCGAA 300 consensus_4862#1 CAGCAGGGAAAACAGTTCTCCACCAGCTCCGAACGCAATCGGAGGCAATGGC--GGCTTA 162 ** ** *** * * *** * ** * ** ** * * *** * consensus_4862#0 GCATCTCCCATACGCGTGTGCTTAAAAAGGAACCACTGATACACACCGCAATACAGCAGT 360 consensus_4862#1 ACGGAGGTTGTA-GTGC-TGCTGGTGCTGGTGCTGATTGTACGGGAAGTGACGCAT---- 216 * ** * * **** ** * * *** * * ** consensus_4862#0 CCGGATTTAAGCGCGTCAAGCGCGGCTTCCGCCATGCCGTCCCGCTGAACTACATCCCGG 420 consensus_4862#1 ---------ATCGCTCGGAGAGCGCCTGCCAA-ATGGGGCCTCGGTTTAGTGCAAATCAG 266 * *** ** *** ** ** *** * * ** * * * ** * * consensus_4862#0 ACAAGGCGCCCGGGTACGGTGGCGAGAATGTGCCGACCGATCCGTACTTCCCGTTCCAGT 480 consensus_4862#1 TAGCTGTGCGTGTGCTTTGTAACGGGAA---GCAGAAGAAGCAGGAGCGGCCCTTCCGAA 323 * ** * * ** ** *** ** ** * * * * ** **** consensus_4862#0 GGTACTTGAAAAACACGGGACAAAACGGCGGCAAGGCGAAGCTCGACCTCAACGTGCTGG 540 consensus_4862#1 CAAACCTGCACCGGAAGCACGGAGACACACAAAAACCGAAAGGGGGAC---ACGCGCGAG 380 ** ** * * * * ** ** **** * * *** ** * consensus_4862#0 CTGCGTGGGACCAAGGCATTACCGGGAAAAACATTACCACCGCCATCATGGGACGACGGC 600 consensus_4862#1 CAGCCGAGGATACGAGTTTAAAGGGCAAAAGTTACAGCATCAACGCCA----ACCATGTT 436 * ** *** * * * ** **** * ** * * ** ** * * consensus_4862#0 GTTGATTACATGCACGCGGATCTGAAGTTTAATTATAATGCCGAAGCGAGTTACGATTTT 660 consensus_4862#1 CGTGA--AGAAGCTCGCCTACTTGATGGTGGGTGGTGGCGGTCTGCCTGTTT--GGCATT 492 *** * * ** *** * *** * * * * * * ** * ** consensus_4862#0 AGCAGCAACGATCCGTTCCCTTACCCACGGTACACGGACGATTGGTTCAATAGCCATGGC 720 consensus_4862#1 GGCTGCATCGCGGCGACCGGACTGCCGGGATCGGCTGCCA-------------------- 532 ** *** ** ** * ** * * * * * consensus_4862#0 ACACGGTGCGCCGGTGAGGTAGCCGCCGCCCGGGACAACGGCATCTGCGGGGTGGGCGTT 780 consensus_4862#1 ------------------------------------------------------------ consensus_4862#0 GCGTACGATTCGAAGATCGCCGGCATCCGAATGCTGGACCAGCCGTACATGACCGATCTG 840 consensus_4862#1 ------------------------------------------------------------ consensus_4862#0 ATCGAGGCGAACTCGATGGGGCACGAGCCGCACAAGATCCACATCTACAGCGCGTCCTGG 900 consensus_4862#1 ------------------------------------------------------------ consensus_4862#0 GGCCCGACCGACGACGGCAAAACGGTGGACGGCCCACGGAACGCGACGATGCGCGCGATC 960 consensus_4862#1 ------------------------------------------------------------ consensus_4862#0 GTACAGGGTGTCAACGAGGGCCGGAACGGGCTGGGCAACATCTACGT 1007 consensus_4862#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||