These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1327 fasta sequence [CCGCAGCGATACAAGAATAAGAATAAAAGTTAATGGAACAAAACGATGTAACCACACAACAAAAATCAAATACTTTGCACACACAGCTAAACACCGTAAAAGAAGAGCGGTCAAAAGACGCTTCCGGGGATTGCTAACTATTGTATTATTTACAGAAACTTTTAATAATGCAGTACGAATAAAAATACACTTTCACACTAAGCATCTTATAAACCATCCCACTCATTCATTCATTCTCAAAATCCATAAGCAACGTAATGGTTGCGAAGACTCTTGGGCGAAAACACACAGACACTGGCAAATATTGTTAAAAGTATAAAACATATGAGCTAAAAGAGAACCTAATAGTTATTCCTTACTGGCATTTAAAGCAACAGGTGCGCAATATGCACAATTAAAAACACAAATTACACAATAAAAGCTACAAAACAACTATTGGACTGTGCTGGGTAGAGAGTACTGCTGGATAGCTAAGTGGGTATACAGAAGTTTTTTTTAATTTAAACGGCAAAACATGGGACAACAAGCACAATTTAAATAAACAAAAGAATTATAGAACAGGTAATAAATGTAGTCTTACTTCATAATTGCTTTTATCAGTTTGATTATCGCAAAAACAAAACACACTTTCAGTTTGCTTCACACAGGTGTGTGTTGAGTCCATACTCTCCCACCAAAAGATTTCCAAACTATTAACGTTTTCACGAATACAAAGATTTCAGAAGATGTAGCTAGGGTTTCAATAACTTCTTCCATCTTGTCATATTTGTTATGATTTTTTTCAGTAAGGTCTATAATATCGAATTTAACGTCAATTGACGAATTCACAAGCATCTTCTTAACTGCTAATGTCTAATGGAAAGTCTTTACTCATTTGATAGTTTTAGGAGCTAGGGATTGTTTTATACCAAAATTATATGTATTTTAAGAACAGGCAGCTAGGTAATAGTTTCTTTCGCTCTCTTGTTTATAATAAAAGAGTTGTGTAGATATATATTAAGAATGAGTTTGTTCGAAACCAACGATATGTATGAATGATTTAACGTATAAATTAAAACTCACTTTGCGCGTGGTTAACGAGAATCTATCGGAAAAAAATGTTATGTTAGTCCAATAGACCAGTACAAAAGGGTACGTAGTAGTGACAACAAACTGTTTGCTCTCATCGTGTTGATGAGTTTTACCATCTCTATGGCCTTCGTGTAACGTACCCTAGAGCGCAGTAACATGAAACTTTCTATTTGATTTGAGAAAATGAACAAAATGCGATCGTAGAAGATGAACACATTATTAACCAGCGTCCAACAACGAGGCATGCACGAACTCA] [+] EMBL BM653585 [CCGCAGCGATACAAGAATAAGAATAAAAGTTAATGGAACAAAACGATGTAACCACACAACAAAAATCAAATACTTTGCACACACAGCTAAACACCGTAAAAGAAGAGCGGTCAAAAGACGCTTCCGGGGATTGCTAACTATTGTATTATTTACAGAAACTTTTAATAATGCAGTACGAATAAAAATACACTTTCACACTAAGCATCTTATAAACCATCCCACTCATTCATTCATTCTCAAAATCCATAAGCAACGTAATGGTTGCGAAGACTCTTGGGCGAAAACACACAGACACTGGCAAATATTGTTAAAAGTATAAAACATATGAGCTAAAAGAGAACCTAATAGTTATTCCTTACTGGCATTTAAAGCAACAGGTGCGCAATATGCACAATTAAAAACACAAATTACACAATAAAAGCTACAAAACAACTATTGGACTGTGCTGGGTAGAGAGTACTGCTGGATAGCTAAGTGGGTATACAGAAGTTTTTTTTAATTTAAACGGCAAAACATGGGACAACAAGCACAATTTAAATAAACAAAAGAATTATAGAACAGGTAATAAATGTAGTCTTACTTCATAATTGCTTTTATCAGTTTGATTAT ] [+] EMBL BM589122 [ ccgGAAACTTTTAATAATGCAGTACGAATAAAAATACACTTTCACACTAAGCATCTTATAAACCATCCCACTCATTCATTCATTCTCAAAATCCATAAGCAACGTAATGGTTGCGAAGACTCTTGGGCGAAAACACACAGACACTGGCAAATATTGTTAAAAGTATAAAACATATGAGCTAAAAGAGAACCTAATAGTTATTCCTTACTGGCATTTAAAGCAACAGGTGCGCAATATGCACAATTAAAAACACAAATTACACAATAAAAGCTACAAAACAACTATTGGACTGTGCTGGGTAGAGAGTACTGCTGGATAGCTAAGTGGGTATACAGAAGTTTTTTTTAATTTAAACGGCAAAACATGGGACAACAAGCACAATTTAAATAAACAAAAGAATTATAGAACAGGTAATAAATGTAGTCTTACTTCATAATTGCTTTTATCAGTTTGATTATCGCAAAAACAAAACACACTTTCAGTTTGCTTCACACAGGTGTGTGTTGAGTCCATACTCTCCCACCAAAAGATTTCCAAACTATTAACGTTTTCACGAATACAAAGATTTCAGAAGATGTAGCTAGGGTTTCAATAACTTCTTCCATCTTGTCATATTTGTTATGATTTTTTTCAGTAAGGTCTATAATATCGAATTT ] [+] EMBL BX627729 [ CCATACTCTCCCACCAAAAGATTTCCAAACTATTAACGTTTTCACGAATACAAAGATTTCAGAAGATGTAGCTAGGGTTTCAATAACTTCTTCCATCTTGTCATATTTGTTATGATTTTTTTCAGTAAGGTCTATAATATCGAATTTAACGTCAATTGACGAATTCACAAGCATCTTCTTAACTGCTAATGTCTAATGGAAAGTCTTTACTCATTTGATAGTTTTAGGAGCTAGGGATTGTTTTATACCAAAATTATATGTATTTTAAGAACAGGCAGCTAGGTAATAGTTTCTTTCGCTCTCTTGTTTATAATAAAAGAGTTGTGTAGATATATATTAAGAATGAGTTTGTTCGAAACCAACGATATGTATGAATGATTTAACGTATAAATTAAAACTCACTTTGCGCGTGGTTAACGAGAATCTATCGGAAAAAAATGTTATGTTAGTCCAATAGACCAGTACAAAAGGGTACGTAGTAGTGACAACAAACTGTTTGCTCTCATCGTGTTGATGAGTTTTACCATCTCTATGGCCTTCGTGTAACGTACCCTAGAGCGCAGTAACATGAAACTTTCTATTTGATTTGAGAAAATGAACAAAATGCGATCGTAGAAGATGAACACATTATTAACCAGCGTCCAACAACGAGGCATGCACGAACTCA] consensusID : consensus_4868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [CAGAATCCCCGAGGCATCTGGTCATATTTGTTATGATTTTTTTCAGTAAGGTCTATAATATCGAATTTAACGTCAATTGACGAATTCACAAGCATCTTCTTAACTGCTAATGTCTAATGGAAAGTCTTTACTCATTTGATAGTTTTAGGAGCTAGGGATTGTTTTATACCAAAATTATATGTATTTTAAGAACAGGCAGCTATGTAATAGTTTCTTTCGCTCTCTTGTTTATAATAAAAGAGTTGTGTAGATATATATTAAGAATGAGTTTGTTCGAAACCAACGATATGTATGAATGATTTAACGTATAAATTAAAACTCACTTTGCGCGTGGTTAACGAGAATCGATCGGAAAAAAATGTTATGTTAGTCCAATAGACCAGTACAAAAGGGTACGTAGTAGTGACAACAAACTGTTTGCTCTCATCGTGTTGATGAGTTTTACCATCTCTATGGCCTTCGTGTAACGTACCCTAGAGCGCAGTAACATGAAACTTTCTATTTGATTTGAGAAAATGAACAAAATGCGATCGTAAACGATGAACACATTATTAACAAGCGTCCAACAACGAGGCATGCACGAACTCATAATCTATTTATGCAGAAGCTTTGAAAAGCAAACACAAAACTCACTTAATAAGTAATCTATCAAACAAACAAACAAAAAACAAAACAAACACAAT] [+] EMBL AL932465 [CAGAATCCCCGAGGCATCTGGTCATATTTGTTATGATTTTTTTCAGTAAGGTCTATAATATCGAATTTAACGTCAATTGACGAATTCACAAGCATCTTCTTAACTGCTAATGTCTAATGGAAAGTCTTTACTCATTTGATAGTTTTAGGAGCTAGGGATTGTTTTATACCAAAATTATATGTATTTTAAGAACAGGCAGCTATGTAATAGTTTCTTTCGCTCTCTTGTTTATAATAAAAGAGTTGTGTAGATATATATTAAGAATGAGTTTGTTCGAAACCAACGATATGTATGAATGATTTAACGTATAAATTAAAACTCACTTTGCGCGTGGTTAACGAGAATCGATCGGAAAAAAATGTTATGTTAGTCCAATAGACCAGTACAAAAGGGTACGTAGTAGTGACAACAAACTGTTTGCTCTCATCGTGTTGATGAGTTTTACCATCTCTATGGCCTTCGTGTAACGTACCCTAGAGCGCAGTAACATGAAACTTTCTATTTGATTTGAGAAAATGAACAAAATGCGATCGTAAACGATGAACACATTATTAACAAGCGTCCAACAACGAGGCATGCACGAACTCATAATCTATTTATGCAGAAGCTTTGAAAAGCAAACACAAAACTCACTTAATAAGTAATCTATCAAACAAACAAACAAAAAACAAAACAAACACAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4868#0 CCGCAGCGATACAAGAATAAGAATAAAAGTTAATGGAACAAAACGATGTAACCACACAAC 60 consensus_4868#1 ------------------------------------------------------------ consensus_4868#0 AAAAATCAAATACTTTGCACACACAGCTAAACACCGTAAAAGAAGAGCGGTCAAAAGACG 120 consensus_4868#1 ------------------------------------------------------------ consensus_4868#0 CTTCCGGGGATTGCTAACTATTGTATTATTTACAGAAACTTTTAATAATGCAGTACGAAT 180 consensus_4868#1 ------------------------------------------------------------ consensus_4868#0 AAAAATACACTTTCACACTAAGCATCTTATAAACCATCCCACTCATTCATTCATTCTCAA 240 consensus_4868#1 ------------------------------------------------------------ consensus_4868#0 AATCCATAAGCAACGTAATGGTTGCGAAGACTCTTGGGCGAAAACACACAGACACTGGCA 300 consensus_4868#1 ------------------------------------------------------------ consensus_4868#0 AATATTGTTAAAAGTATAAAACATATGAGCTAAAAGAGAACCTAATAGTTATTCCTTACT 360 consensus_4868#1 ------------------------------------------------------------ consensus_4868#0 GGCATTTAAAGCAACAGGTGCGCAATATGCACAATTAAAAACACAAATTACACAATAAAA 420 consensus_4868#1 ------------------------------------------------------------ consensus_4868#0 GCTACAAAACAACTATTGGACTGTGCTGGGTAGAGAGTACTGCTGGATAGCTAAGTGGGT 480 consensus_4868#1 ------------------------------------------------------------ consensus_4868#0 ATACAGAAGTTTTTTTTAATTTAAACGGCAAAACATGGGACAACAAGCACAATTTAAATA 540 consensus_4868#1 ------------------------------------------------------------ consensus_4868#0 AACAAAAGAATTATAGAACAGGTAATAAATGTAGTCTTACTTCATAATTGCTTTTATCAG 600 consensus_4868#1 ------------------------------------------------------------ consensus_4868#0 TTTGATTATCGCAAAAACAAAACACACTTTCAGTTTGCTTCACACAGGTGTGTGTTGAGT 660 consensus_4868#1 ------------------------------------------------------------ consensus_4868#0 CCATACTCTCCCACCAAAAGATTTCCAAACTATTAACGTTTTCACGAATACAAAGATTTC 720 consensus_4868#1 ------------------------------------------------------------ consensus_4868#0 AGAAGATGTAGCTAGGGTTTCAATAACTTCTTC-CATCTTGTCATATTTGTTATGATTTT 779 consensus_4868#1 --------------------CAGAATCCCCGAGGCATCTGGTCATATTTGTTATGATTTT 40 ** * * * ***** ******************** consensus_4868#0 TTTCAGTAAGGTCTATAATATCGAATTTAACGTCAATTGACGAATTCACAAGCATCTTCT 839 consensus_4868#1 TTTCAGTAAGGTCTATAATATCGAATTTAACGTCAATTGACGAATTCACAAGCATCTTCT 100 ************************************************************ consensus_4868#0 TAACTGCTAATGTCTAATGGAAAGTCTTTACTCATTTGATAGTTTTAGGAGCTAGGGATT 899 consensus_4868#1 TAACTGCTAATGTCTAATGGAAAGTCTTTACTCATTTGATAGTTTTAGGAGCTAGGGATT 160 ************************************************************ consensus_4868#0 GTTTTATACCAAAATTATATGTATTTTAAGAACAGGCAGCTAGGTAATAGTTTCTTTCGC 959 consensus_4868#1 GTTTTATACCAAAATTATATGTATTTTAAGAACAGGCAGCTATGTAATAGTTTCTTTCGC 220 ****************************************** ***************** consensus_4868#0 TCTCTTGTTTATAATAAAAGAGTTGTGTAGATATATATTAAGAATGAGTTTGTTCGAAAC 1019 consensus_4868#1 TCTCTTGTTTATAATAAAAGAGTTGTGTAGATATATATTAAGAATGAGTTTGTTCGAAAC 280 ************************************************************ consensus_4868#0 CAACGATATGTATGAATGATTTAACGTATAAATTAAAACTCACTTTGCGCGTGGTTAACG 1079 consensus_4868#1 CAACGATATGTATGAATGATTTAACGTATAAATTAAAACTCACTTTGCGCGTGGTTAACG 340 ************************************************************ consensus_4868#0 AGAATCTATCGGAAAAAAATGTTATGTTAGTCCAATAGACCAGTACAAAAGGGTACGTAG 1139 consensus_4868#1 AGAATCGATCGGAAAAAAATGTTATGTTAGTCCAATAGACCAGTACAAAAGGGTACGTAG 400 ****** ***************************************************** consensus_4868#0 TAGTGACAACAAACTGTTTGCTCTCATCGTGTTGATGAGTTTTACCATCTCTATGGCCTT 1199 consensus_4868#1 TAGTGACAACAAACTGTTTGCTCTCATCGTGTTGATGAGTTTTACCATCTCTATGGCCTT 460 ************************************************************ consensus_4868#0 CGTGTAACGTACCCTAGAGCGCAGTAACATGAAACTTTCTATTTGATTTGAGAAAATGAA 1259 consensus_4868#1 CGTGTAACGTACCCTAGAGCGCAGTAACATGAAACTTTCTATTTGATTTGAGAAAATGAA 520 ************************************************************ consensus_4868#0 CAAAATGCGATCGTAGAAGATGAACACATTATTAACCAGCGTCCAACAACGAGGCATGCA 1319 consensus_4868#1 CAAAATGCGATCGTAAACGATGAACACATTATTAACAAGCGTCCAACAACGAGGCATGCA 580 *************** * ****************** *********************** consensus_4868#0 CGAACTCA---------------------------------------------------- 1327 consensus_4868#1 CGAACTCATAATCTATTTATGCAGAAGCTTTGAAAAGCAAACACAAAACTCACTTAATAA 640 ******** consensus_4868#0 ------------------------------------------- consensus_4868#1 GTAATCTATCAAACAAACAAACAAAAAACAAAACAAACACAAT 683 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||