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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4870#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 932 fasta sequence
[GAACTGTTGGCCCACTGGCTTTTTCCGGTCGGCCATCAGTGCCAGTGAAA-ACATTTCACTAAGCCAAAAT-GG-GTAAGATTATGAAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGTACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGTTCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGAGCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACAACCATCTGATGCCGACGCGCTACAGCGTGCCAGATGTGAACCTGGACAGCAAGTTCGAGGAGCGACACAAGACCGGCAAGAATAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACAACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAAGTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTTCCGGCCGTTTTTTGCACGCGGCTGGTGGCGGCGTTGGTTGTGCAGTGTGTGGCGTGCTGGGGCAGCGATGCACTCCGAGTTGTGAGGTGTGTGTGTACATGTGTATGTGATGGTGTGCTTTTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCCATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTGATTCGGAACCGGAACAGCATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAAGAAAGCACAGGCTCGTTTTGGATACCCAATAAATTCGTGTTATCTACTTGG-AAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCGGGGGG]
[-] EMBL CNS095JX [GAACTGTTGGCCCACTGGCTTTTTCCGGTCGGCCATCAGTGCCAGTGAAACACATTTCACTAAGCCAAAAT GG GTAAGATTATGAAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGTACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGTTCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGAGCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACAACCATCTGATGCCGACGCGCTACAGCGTGCCAGATGTGAACCTGGACAGCAAGTTCGAGGAGCGACACAAGACCGGCAAGAATAAGTGGTTCTTCCAGAAGCTCCGTTTTTAAGGCAACAACCTACTGTGCACAGAGGGGAAAACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAAGTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTTCCGGCCGTTTTTTGCACGCGGCTGGTGGCGGCGTTGGTTGTGCAGTTTGTGGCGTGCTGGGGCAGCGATGCACTCCGAGTTGTGAGGTGTGTGTGTACATGTGTATGTGATGGTGTGCTTTTTTGAGGAAGAATCGAAGAAGAAAAGTCCAAACACACGCACCCGGCCGAGGGGTTATCCATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTGATTCGGAACCGGGACAGCATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAAGAAAGGACAGGCTCGTTTTGGATACCCAATAAATTCGTGTTATCTACTTGG AAA ]
[+] EMBL CNS095JW [ TTTTTCGGTCGGCCATCAGTGCCAGTGAAA ACATTTCACTAAGCCAAAAT GGTGTAAGATTATGAAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGTACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGTTCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGAGCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACAACCATCTGATGCCGACGCGCTACAGCGTGCCAGATGTGAACCTGGACAGCAAGTTCGAGGAGCGACACAAGACCGGCAAGAATAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACAACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAAGTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTTCCGGCCGTTTTTTGCACGCGGCTGGTGGCGGCGTTGGTTGTGCAGTGTGTGGCGTGCTGGGGCAGCGATGCACTCCGAGTTGTGAGGTGTGTGTGTACATGTGTATGTGATGGTGTGCTTTTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCCATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTGATTCGGAACCGGAACAGCATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAAGAAAGCACAGGCTCGTTTTGGATACCCAATAAATTCGTGTTATCTACTTGG AAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCGGGGGG]
[+] EMBL CNS095SD [ acGTCGGCCATCAGTGCCAGTGAAA ACATTTCACTAAGCCAAAATGGG GTAAGATTATGAAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGTACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGTTCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGAGCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACAACCATCTGATGCCGACGCGCTACAGCGTGCCAGATGTGAACCTGGACAGCAAGTTCGAGGAGCGACACAAGACCGGCAAGAATAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACAACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAAGTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTTCCGGCCGTTTTTTGCACGCGGCTGGTGGCGGCGTTGGTTGTGCAGTGTGTGGCGTGCTGGGGCAGCGATGCACTCCGAGTTGTGAGGTGTGTGTGTACATGTGTATGTGATGGTGTGCTTTTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCCATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTGATTCGGAACCGGAACAACATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAAGAAAGCACAGGCTCGTTTTGGATACCCAATAAATTCGTGTTATCTACTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCA ATGTGCCC ]
consensusID : consensus_4870#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence
[ATTTAAAACATTTCACTAAGCAAAATGGGTAAGATTATGAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGTACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGTTCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGAGCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACAACCATCTGATGCCGACGCGCTACAGCGTACCAGATCCGCTGCAAGTTCGAGGAGCGACACAAGACCGGCAAGAACAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACAACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAAGTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTTCCGGCCGTTTTTTGCACGCGGCTGGTGGCGGTGTTGGTGGTGCAGTGTGTGGCGAGCTGGGGCAGCGATGCACTCCGAGTTGTGTAGTGTGTGTATACATGTGTATGTGATGGTGTGCTTTTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCCATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTGATTCGGAACCGGAACAACATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAGGAAAGCACAGGCTCGTTTAGGATACCCAATAAATTCGTGTTATCTACTTGGAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCACATGTCCTCCACCTT]
[+] EMBL CNS09755 [ATTTAAAACATTTCACTAAGCAAAATGGGTAAGATTATGAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGTACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGTTCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGAGCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACAACCATCTGATGCCGACGCGCTACAGCGTACCAGATCCGCTGCAAGTTCGAGGAGCGACACAAGACCGGCAAGAACAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACAACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAAGTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTTCCGGCCGTTTTTTGCACGCGGCTGGTGGCGGTGTTGGTGGTGCAGTGTGTGGCGAGCTGGGGCAGCGATGCACTCCGAGTTGTGTAGTGTGTGTATACATGTGTATGTGATGGTGTGCTTTTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCCATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTGATTCGGAACCGGAACAACATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAGGAAAGCACAGGCTCGTTTAGGATACCCAATAAATTCGTGTTATCTACTTGGAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCACATGTCCTCCACCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4870#0 GAACTGTTGGCCCACTGGCTTTTTCCGGTCGGCCATCAGTGCCAGTGAAAACATTTCACT 60
consensus_4870#1 -------------------------------------------ATTTAAAACATTTCACT 17
* * *************
consensus_4870#0 AAGCCAAAATGGGTAAGATTATGAAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGT 120
consensus_4870#1 AAGC-AAAATGGGTAAGATTATGAA-TCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGT 75
**** ******************** **********************************
consensus_4870#0 ACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGT 180
consensus_4870#1 ACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGT 135
************************************************************
consensus_4870#0 TCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGA 240
consensus_4870#1 TCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGA 195
************************************************************
consensus_4870#0 GCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACA 300
consensus_4870#1 GCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACA 255
************************************************************
consensus_4870#0 ACCATCTGATGCCGACGCGCTACAGCGTGCCAGATGTGAACCTGGACAGCAAGTTCGAGG 360
consensus_4870#1 ACCATCTGATGCCGACGCGCTACAGCGTACCAGATCCG--------CTGCAAGTTCGAGG 307
**************************** ****** * * ************
consensus_4870#0 AGCGACACAAGACCGGCAAGAATAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACA 420
consensus_4870#1 AGCGACACAAGACCGGCAAGAACAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACA 367
********************** *************************************
consensus_4870#0 ACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAA 480
consensus_4870#1 ACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAA 427
************************************************************
consensus_4870#0 GTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTT 540
consensus_4870#1 GTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTT 487
************************************************************
consensus_4870#0 CCGGCCGTTTTTTGCACGCGGCTGGTGGCGGCGTTGGTTGTGCAGTGTGTGGCGTGCTGG 600
consensus_4870#1 CCGGCCGTTTTTTGCACGCGGCTGGTGGCGGTGTTGGTGGTGCAGTGTGTGGCGAGCTGG 547
******************************* ****** *************** *****
consensus_4870#0 GGCAGCGATGCACTCCGAGTTGTGAGGTGTGTGTGTACATGTGTATGTGATGGTGTGCTT 660
consensus_4870#1 GGCAGCGATGCACTCCGAGTTGTGTAGTGTGTGTATACATGTGTATGTGATGGTGTGCTT 607
************************ ******** *************************
consensus_4870#0 TTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCC 720
consensus_4870#1 TTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCC 667
************************************************************
consensus_4870#0 ATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTG 780
consensus_4870#1 ATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTG 727
************************************************************
consensus_4870#0 ATTCGGAACCGGAACAGCATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAAGAAAGCAC 840
consensus_4870#1 ATTCGGAACCGGAACAACATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAGGAAAGCAC 787
**************** ********************************** ********
consensus_4870#0 AGGCTCGTTTTGGATACCCAATAAATTCGTGTTATCTACTTGGAAAAA--------AAAA 892
consensus_4870#1 AGGCTCGTTTAGGATACCCAATAAATTCGTGTTATCTACTTGGAAAAAGGAAAAAAAAAA 847
********** ************************************* ****
consensus_4870#0 AAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCGGGGGG 932
consensus_4870#1 AAAAAAAAAAAAAAAAAGGCACATGTCCTCCACCTT---- 883
**************** * ******* * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||