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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1292 fasta sequence
[GGATTTCGGGGATAGGCTTGCGCGTATTTTTACACTCCCTTTTGTGTTAATTTGCTGTAGTTGAGGTTATTCAGCCATCATTCCGATTTATCGCCGGGGGTTTTTTCGTTCTTGACGAGACTTTTTCTTGCACGGAACGTGGCCT-GTCTCATCCTATTTCGGCTATGCTTGATAGCTGCCGTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAACAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAACCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGTATACCCATGTGTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCTTTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAACTTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTGGGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGAAGGTTCGCTGGTTTACGAATATTTGTTCGGTTTTGGGCAGATTTGATACCCACGGTTAGTTGAAGCTGTCGTTGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGGGTCCACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCG-CCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTTTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGCCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGCTTGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAGCTGAGATTTGACTGTGCCGATACATGGTGAGAGGTGGTGGCTTGGATGTGTACTACTTTGTCATCTCCGCTCTCTTCCGATTCTAATTTGTACGATTGAATGCGGTTACGCTGAACCTTTGCTCGCTGTGACGCCGG]
[+] EMBL CNS09P1S [GGATTTCGGGGATAGGCTTGCGCGTATTTTTACACTCCCTTTTGTGTTAATTTGCTGTAGTTGAGGTTATTCAGCCATCATTCCGATTTATCGCCGGGGGTTTTTTCGTTCTTGACGAGACTTTTTCTTGCACGGAACGTGGCCT GTCTCATCCTATTTCGGCTATGCTTGATAGCTGCCGTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAACAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAACCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGTATACCCATGTGTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCTTTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAACTTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTGGGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGAAGGTTCGCTGGTTTACGAATATTTGTTCGGTTTTGGGCAGATTTGATACCCACGGTTAGTTGAAGCTGTCGTTGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGGGTCCACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCG CCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTTTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCAC ]
[+] EMBL CNS09QLU [ ACTTTTTCTTGCACGGAAC GGCTTGGTCTCATCCTATTTCGGCTATGCTTGATAGCTGCCGTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAACAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAACCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGTATACCCATGTTTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCTTTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAACTTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTGGGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGA ]
[-] EMBL BM636469 [ GCTGGTTTACGAATATTGGTTCGGTTTTGGGCAGATTTCATACCCACGGTTAGTTGAAGCTGTCGTTGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCAGATACGCCAGGTTTCGCTCCTTCCTCGCCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGCCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGCTTGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAGCTGAGATTTGACTGTGCCGATACATGGTGAGAGGTGGTGGCTTGGATGTGTACTACTTTGTCATCTCCGCTCTCTTCCGATTCTAATTTGTACGATTGAATGCGGTTACGCTGAACCTTTGCTCGCTGTGACGCCGG]
consensusID : consensus_4873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[CCTGTGTTGGAGGTGATGGTGGTGGTGGTGGTGTTTCTGCTGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGGCTCATCAGTGTAGTCCGGTTCANCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGTCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGCTAGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAACTGAGATTTGACTGTGCCGATACATGGTGAGAGGNGGTGGCTTGGATGTGTA]
[-] EMBL BX621002 [CCTGTGTTGGAGGTGATGGTGGTGGTGGTGGTGTTTCTGCTGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGGCTCATCAGTGTAGTCCGGTTCANCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGTCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGCTAGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAACTGAGATTTGACTGTGCCGATACATGGTGAGAGGNGGTGGCTTGGATGTGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4873#0 GGATTTCGGGGATAGGCTTGCGCGTATTTTTACACTCCCTTTTGTGTTAATTTGCTGTAG 60
consensus_4873#1 ------------------------------------------------------------
consensus_4873#0 TTGAGGTTATTCAGCCATCATTCCGATTTATCGCCGGGGGTTTTTTCGTTCTTGACGAGA 120
consensus_4873#1 ------------------------------------------------------------
consensus_4873#0 CTTTTTCTTGCACGGAACGTGGCCTGTCTCATCCTATTTCGGCTATGCTTGATAGCTGCC 180
consensus_4873#1 ------------------------------------------------------------
consensus_4873#0 GTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAA 240
consensus_4873#1 ------------------------------------------------------------
consensus_4873#0 CAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAA 300
consensus_4873#1 ------------------------------------------------------------
consensus_4873#0 CCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGT 360
consensus_4873#1 ------------------------------------------------------------
consensus_4873#0 ATACCCATGTGTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCT 420
consensus_4873#1 ------------------------------------------------------------
consensus_4873#0 TTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAAC 480
consensus_4873#1 ------------------------------------------------------------
consensus_4873#0 TTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTG 540
consensus_4873#1 ------------------------------------------------------------
consensus_4873#0 GGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGAAGGTTCGCTGGT 600
consensus_4873#1 ------------------------------------------------------------
consensus_4873#0 TTACGAATATTTGTTCGGTTTTGGGCAGATTTGATACCCACGGTTAGTTGAAGCTGTCGT 660
consensus_4873#1 ------------------------CCTGTGTTGGAGGTGATGGT--GGTGGTGGTGGTGT 34
* * *** * *** * ** * ** **
consensus_4873#0 TGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGGGTCC 720
consensus_4873#1 TTCTGCT--GCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCC 92
* * * ********************************************** ****
consensus_4873#0 ACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCG 780
consensus_4873#1 ACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCG 152
************************************************************
consensus_4873#0 TACTTGCCCATGGCCATGTCACCGTAAGTTTCGTCTTCCACGTAGTTTCCATCATCGTCG 840
consensus_4873#1 TACTTGCCCATGGCCATGTCACCGTAAGTGTCGTCTTCCACGTAGTTTCCATCATCGTCG 212
***************************** ******************************
consensus_4873#0 GCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTT 900
consensus_4873#1 GCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTT 272
************************************************************
consensus_4873#0 TCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCGATC 960
consensus_4873#1 TCGATCTCGGCCGGCTCATCAGTGTAGTCCGGTTCANCCTTGGGATTTATCGATTCGATC 332
************* ********************** ***********************
consensus_4873#0 GGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACC 1020
consensus_4873#1 GGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACC 392
************************************************************
consensus_4873#0 GTCTGCACGGTTTGCACCTGTGCCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTG 1080
consensus_4873#1 GTCTGCACGGTTTGCACCTGTGTCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTG 452
********************** *************************************
consensus_4873#0 GCACTGATGGACATTTTCGTTCGCTTGCTTGCGTGGCTTTGGAGACCGCGCTGTGGCATG 1140
consensus_4873#1 GCACTGATGGACATTTTCGTTCGCTTGCTAGCGTGGCTTTGGAGACCGCGCTGTGGCATG 512
***************************** ******************************
consensus_4873#0 GTACGTTTTTGCGAGCTGAGATTTGACTGTGCCGATACATGGTGAGAGGTGGTGGCTTGG 1200
consensus_4873#1 GTACGTTTTTGCGAACTGAGATTTGACTGTGCCGATACATGGTGAGAGGNGGTGGCTTGG 572
************** ********************************** **********
consensus_4873#0 ATGTGTACTACTTTGTCATCTCCGCTCTCTTCCGATTCTAATTTGTACGATTGAATGCGG 1260
consensus_4873#1 ATGTGTA----------------------------------------------------- 579
*******
consensus_4873#0 TTACGCTGAACCTTTGCTCGCTGTGACGCCGG 1292
consensus_4873#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||