These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 755 fasta sequence [CAGAATCCCCGNGTTATACTACAGTATTTCAAACAGGTCACTTTCCCGCTTCTTTTGTCAAATAAACCGGCCCAACCATGGATGATGGTGCTGCCTCCACTGGTGTGATCGTGAAGAACAAGCCGGGCGCAAAGCCGCTGAACATCGTCGATGACTTCAACCGTCGCAAGATGCCGCTCTACAAGCACTGGGTTCGCCCACAATTCTTGCAGTACAACTACATGTACGATACCGCGTGAACTACTACGATGACGTCATCGACTTATCTGGACCGACGATCACGGGGGCCGTTGCCTCGGAGGATCCCTCGCCCCCAGACCTGGGCCGAGCGTGTACCTGAGAACGCAGAAGACCGCACTACGTGACATCAACCGATGCGTACAATACACCAGCATCAGGCACAAGAAGGACGACAAGAAGCTTATGTAACACGCTAAGTAATCAGATCAAGTCGTACAATGCGCACTCGAAGGCATACACTAACAGAAAGTACCGCAAGATCCTCTAAACAACATGCGTTTCCCCATCCTGCTTCTACAAACAAAACAGAAGAGCAAAANACCAACACAAACAAAACTCTTCCAAATATTGATACTCTTTACCCCTTTCTTCTAACCGCTTGGCTTAGGTAAGGTATAATATANAACTAAATGCAAACACTCAATAACATCCCGTATTGCACTCAAACAATGCTTCCGCTTGCTTAGCTTACGAAATGCACCTTTGTCACTTTCATCATCACAAAACGTTGACAC] [+] EMBL AL692983 [CAGAATCCCCGNGTTATACTACAGTATTTCAAACAGGTCACTTTCCCGCTTCTTTTGTCAAATAAACCGGCCCAACCATGGATGATGGTGCTGCCTCCACTGGTGTGATCGTGAAGAACAAGCCGGGCGCAAAGCCGCTGAACATCGTCGATGACTTCAACCGTCGCAAGATGCCGCTCTACAAGCACTGGGTTCGCCCACAATTCTTGCAGTACAACTACATGTACGATACCGCGTGAACTACTACGATGACGTCATCGACTTATCTGGACCGACGATCACGGGGGCCGTTGCCTCGGAGGATCCCTCGCCCCCAGACCTGGGCCGAGCGTGTACCTGAGAACGCAGAAGACCGCACTACGTGACATCAACCGATGCGTACAATACACCAGCATCAGGCACAAGAAGGACGACAAGAAGCTTATGTAACACGCTAAGTAATCAGATCAAGTCGTACAATGCGCACTCGAAGGCATACACTAACAGAAAGTACCGCAAGATCCTCTAAACAACATGCGTTTCCCCATCCTGCTTCTACAAACAAAACAGAAGAGCAAAANACCAACACAAACAAAACTCTTCCAAATATTGATACTCTTTACCCCTTTCTTCTAACCGCTTGGCTTAGGTAAGGTATAATATANAACTAAATGCAAACACTCAATAACATCCCGTATTGCACTCAAACAATGCTTCCGCTTGCTTAGCTTACGAAATGCACCTTTGTCACTTTCATCATCACAAAACGTTGACAC] consensusID : consensus_4878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [TGTACCGGTACGAGGTGGAAACGAGCGAACCGCGGCCAACGCCGAACGTCCCGAAGGATCGGCTGTTTGCCGAGCTGCTCAAACGGTTCGATCCGCTGATCTACAAGTACCACGAGCACGACTCGCTGCTCGAGAACAAGGAGGAGGAAACGCTGAACGAGGAAGAGCGCAAGGCGGCCTGGGAGGAGTTCGAGCAAGAGAAGAACCGACCACCGATGCCGGCGTACGGCACCAGCGGCATGTTGGGCATTGGCGGAATGGGCGGAAGAGGAGTTAATGGACCGGTTACGTCCAGCACAACGTTCGGCTTCCGGAACGATGTGCTTCCGTGGGGCTGGCCATACGCTGGACTTCCGGCCGCTTACCCAGTTGCTGCGTTGCCACCGGCAGCCATCCATGCCGCCTACCCAGCGTACGCTCACCGTGGCGCTTATCTGGCCGCCCCGCACGCTGCCATCCTGGCCGCTCCTCATGCCCCAGCTGCCTCGGTCGCTCACCATGCCGGTGTTGTCCCTGGAGCCACCTCGGTCACTGCCACCCGTGGTGCTGTGCATGTCGCGCCCCTGCCTGGACATGCCGTCTCCCAGCAGCAGCTGAACCTGGCCCCGGCCCCGGGAACCATCTAAGTCCGAGTACACCCAGACCGCACCCAAACATTCAACTGGAACTCATCATCCCACACCGTGTGCAAATCCGCTGAACAAGTGATA] [+] EMBL BX608917 [TGTACCGGTACGAGGTGGAAACGAGCGAACCGCGGCCAACGCCGAACGTCCCGAAGGATCGGCTGTTTGCCGAGCTGCTCAAACGGTTCGATCCGCTGATCTACAAGTACCACGAGCACGACTCGCTGCTCGAGAACAAGGAGGAGGAAACGCTGAACGAGGAAGAGCGCAAGGCGGCCTGGGAGGAGTTCGAGCAAGAGAAGAACCGACCACCGATGCCGGCGTACGGCACCAGCGGCATGTTGGGCATTGGCGGAATGGGCGGAAGAGGAGTTAATGGACCGGTTACGTCCAGCACAACGTTCGGCTTCCGGAACGATGTGCTTCCGTGGGGCTGGCCATACGCTGGACTTCCGGCCGCTTACCCAGTTGCTGCGTTGCCACCGGCAGCCATCCATGCCGCCTACCCAGCGTACGCTCACCGTGGCGCTTATCTGGCCGCCCCGCACGCTGCCATCCTGGCCGCTCCTCATGCCCCAGCTGCCTCGGTCGCTCACCATGCCGGTGTTGTCCCTGGAGCCACCTCGGTCACTGCCACCCGTGGTGCTGTGCATGTCGCGCCCCTGCCTGGACATGCCGTCTCCCAGCAGCAGCTGAACCTGGCCCCGGCCCCGGGAACCATCTAAGTCCGAGTACACCCAGACCGCACCCAAACATTCAACTGGAACTCATCATCCCACACCGTGTGCAAATCCGCTGAACAAGTGATA] consensusID : consensus_4878#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [GCGTCCGTGGAGATCTCTGGATCCATGACCATCCTTTTCCTTATTCTGTGTATATTTTTGCTTCGTTTTCTTGTCTCCTCCGCGGTTGTAATAGTAATTAATATTATAATTTTTCATATAACTACAACGAATACATCTTGTTTTTTTTTTACCAATGCGCGCACGATGTTTTTCAATGCACAAAAATGCGTGGGTTTTAATTCACGCATTGCAGCTCTTCACAACATA] [+] EMBL BM655612 [GCGTCCGTGGAGATCTCTGGATCCATGACCATCCTTTTCCTTATTCTGTGTATATTTTTGCTTCGTTTTCTTGTCTCCTCCGCGGTTGTAATAGTAATTAATATTATAATTTTTCATATAACTACAACGAATACATCTTGTTTTTTTTTTACCAATGCGCGCACGATGTTTTTCAATGCACAAAAATGCGTGGGTTTTAATTCACGCATTGCAGCTCTTCACAACATA] consensusID : consensus_4878#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 106 fasta sequence [GAGAAGGGATGGCTACGACACACTCTAAACACACACATATATGCGGATGTGCTCTGCTCACAGTACATTGTGCTTATACGATCACTCTACACTATTATCAAACTAC] [+] EMBL CNS09559 [GAGAAGGGATGGCTACGACACACTCTAAACACACACATATATGCGGATGTGCTCTGCTCACAGTACATTGTGCTTATACGATCACTCTACACTATTATCAAACTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4878#0 CAGAATCCCCGNGTTATACTACAGTATTTCAAACAGGTCACTTTCCCGCTTCTTTTGTCA 60 consensus_4878#2 ------------------------------------------------------------ consensus_4878#3 ------------------------------------------------------------ consensus_4878#1 ------------------------------------------------------------ consensus_4878#0 AATAAACCGGCCCAACCATGGATGATGGTGCTGCCTCCACTGGTGTGATCGTGAAGAACA 120 consensus_4878#2 --------------------------------------------GCGTCCGTGGAGATCT 16 consensus_4878#3 ------------------------------------------------------------ consensus_4878#1 TGTACCGGTACGAGGTGGAAACGAGCGAACCGCGGCCAACGCCGAACGTCCCGAAGGATC 60 consensus_4878#0 AGCCGGGCGCAAAGCCGCTGAACATCGTCGATGACTTCAACCGTCGCAAGATGCCGCTCT 180 consensus_4878#2 --CTGGATCCA-------TGACCATCCT---TTTCCTTATTCTGTGTATATTTTTGCTTC 64 consensus_4878#3 -----------------------------------------GAGAAGGGATGGCTACGAC 19 consensus_4878#1 GGCTGTTTGCCGAGCTGCTCAAACGGTTCGATCCGCTGATCTACAAGTACCACGAGCACG 120 * consensus_4878#0 ACAAGCACTGGGTTCGCCCACAATTCTTGCAGTACAACTACATGTACGATACCGCGTG-A 239 consensus_4878#2 GTT--TTCTTGTCTCCTCCGCGGTTGTAATAGTA--ATTAATATTATAATTTTTCATATA 120 consensus_4878#3 ACA--CTCTAAACACACACATATATGCGGATGTG---CTCTGCTCACAGTACATTGTG-- 72 consensus_4878#1 ACT--CGCTGCTCGAGAACAAGGAGGAGGAAACGCTGAACGAGGAAGAGCGCAAGGCG-G 177 ** * * consensus_4878#0 ACTACTACGATGACGTCATCGACTTATCTGGACCGA--CGATCACGGGGGCCGTTGCCTC 297 consensus_4878#2 ACTACAACGAATACATC-TTGTTTTTTTTTTACCAATGCGCGCACGATGTTTTTCAATGC 179 consensus_4878#3 -CTTATACGATCAC-TCTACACTATTATCAAACTAC------------------------ 106 consensus_4878#1 CCTGGGAGGAGTTCGAGCAAGAGAAGAACCGACCACCGATGCCGGCGTACGGCACCAGCG 237 ** * ** * ** consensus_4878#0 GGAGGATCCCTCGCCCCCAGACCTGGGCCGAGCGTGTACCTGAGAACGCAGAAGACCGCA 357 consensus_4878#2 ACAAAAATGCGTGGGTTTTAATTCACGCATTGCA-GCTCTTCACAACATA---------- 228 consensus_4878#3 ------------------------------------------------------------ consensus_4878#1 GCATGTTGGGCATTGGCGGAATGGGCGGAAGAGGAGTTAATGGACCGGTTACGTCCAGCA 297 consensus_4878#0 CTACGTGACATCAACCGATGCGTACAATACACCAGCATCAGGCACAAGAAGGACGACAAG 417 consensus_4878#2 ------------------------------------------------------------ consensus_4878#3 ------------------------------------------------------------ consensus_4878#1 CAACGTTCGGCTTCCGGAACGATGTGCTTCCGTGGGGCTGGCCATACGCTGGACTTCCGG 357 consensus_4878#0 AAGCTTATGTAACACGCTAAGTAATCAGATCAAGTCGTACAATGCGCACTCGAAGGCATA 477 consensus_4878#2 ------------------------------------------------------------ consensus_4878#3 ------------------------------------------------------------ consensus_4878#1 CCGCTTACCCAGTTGCTGCGTTGCCACCGGCAGCCATCCATGCCGCCTACCCAGCGTACG 417 consensus_4878#0 CACTAACAGAAAGTACCGCAAGATCCTCTAAACAACATGCGTTTCCCCATCCTGCTTCTA 537 consensus_4878#2 ------------------------------------------------------------ consensus_4878#3 ------------------------------------------------------------ consensus_4878#1 CTCACCGTGGCGCTTATCTGGCCGCCCCGCACGCTGCCATCCTGGCCGCTCCTCATGCCC 477 consensus_4878#0 CAAACAAAACAGAAGAGCAAAANACCAACACAAACAAAACTCTTCCAAATATTGATACTC 597 consensus_4878#2 ------------------------------------------------------------ consensus_4878#3 ------------------------------------------------------------ consensus_4878#1 CAGCTGCCTCGGTCGCTCACCATGCCGGTGTTGTCCCTGGAGCCACCTCGGTCACTGCCA 537 consensus_4878#0 TTTACCCCTTTCTTCTAACCGCTTGGCTTAGGTAAGGTATAATATANAACTAAATGCAAA 657 consensus_4878#2 ------------------------------------------------------------ consensus_4878#3 ------------------------------------------------------------ consensus_4878#1 CCCGTGGTGCTGTGCATGTCGCGCCCCTGCCTGGACATGCCGTCTCCCAGCAGCAGCTGA 597 consensus_4878#0 CACTCAATAACATCCCGTATTGCACTCAAACAATGCTTCCGCTTGCTTAGCTTACGAAAT 717 consensus_4878#2 ------------------------------------------------------------ consensus_4878#3 ------------------------------------------------------------ consensus_4878#1 ACCTGGCCCCGGCCCCGGGAACCATCTAAGTCCGAGTACACCCAGACCGCACCCAAACAT 657 consensus_4878#0 GCACCTTTGTCACTTTCATCATCACAAAACGTTGACAC--------------- 755 consensus_4878#2 ----------------------------------------------------- consensus_4878#3 ----------------------------------------------------- consensus_4878#1 TCAACTGGAACTCATCATCCCACACCGTGTGCAAATCCGCTGAACAAGTGATA 710 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||