cluster # 4879

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Anopheles gambiae
cluster # 4879 cluster # 4879 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4879#0 length = 1300 sequences # 3

consensus_4879#1 length = 683 sequences # 1

consensusID : consensus_4879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1300
fasta sequence

                              [CCGCCCACGCGTCCGAAAACAACCTCCTCATGTTCTCACAACCATACGCACACACATGCAAAGAGGGACAAGCGATACGGGAAAATGAGGGAGGAGGTAAATAATGTTAAAAAATACCACACATCATCTTCATTAGCGGCCGTCGAGAGGAGCAAGATTATCAGCGGCAGCAGTCGTTGGTCGTAGTATCACTCCAGCACCCATTCCGAGGCGCGACGGGAACGGGTTGTGTGGGTAATGAGCGGTGGTGGTGGTGGTGGTAGTGCGGCTGCGGTTTGGCTACATCTGTCCCTGCACGGTCGCGTACGATCACAGTCGGCATCCGTCCTTCGAGCGGCCACGATCGCGATCATCATTCAGCGCAAGAGTTCGGGGTTCGTTCCAATTACGCGGTTTAAGTGCTCCAGTAAGCAGTGTAGGAAGAAACTAAAGTTTAATGCCGTTTGCGTGAACGTTACTGTAGTTTTCCGGGAGTGTTATACCGGCAAACACTCAGCACGATCGATTGAGCGACGCACAAAATTCAGAGAGAGAGACACACGCACACAGTGAATGATTCTTTGTTTACCTTTTCTGTTCACCCCCTGGGGTCACCCCCTCAGTGCAATCGGAACTGCAGTGCGTGCCGTACCGTGCCGTGCGTGCAATCGTCCTCCTCGGCAAGCGGCTACGCACGTATGCGTTACGGCTTCTCGCCCACGGCTCGATCGTGAGTAAGCAGCACGCACGTCGGTTCGGTCGAGTCGGTCGGTTCGGTTTCGCTCTCACGACGCCCTCTCACATAACACA-GAAAAAGGCCGGCTCACGCGCGGTTTCAACGCGGTGAGCAAACGCAACAGCAGTACGTCGCCTCCGTCTGATTTGGAACCGAGTCCGGTACCGTCGGCACCCTCAGTCTCGTTTTCAAACTCGGAGACCAAAGGTGACGAACGCTCCCGAGTGTGTGTGTT-GGCGCACTCGTCTCTGAAAAGTCGTCAAATACGCACGACGCACGCACAATTGTGCGACTGAAAGGGGGTTGGTTCACTGTTTGAAATTTAGAGAAACCGTCTATCACTGTTCAACCCAGCAAGCCCAAAAGTGAAAGTGAAAGTGAAATTTGGCCACCAAGAGGAAGCAGTTTTGGGGGTAGTGCTCGGACGATAAGCAACTCCAAGAACCAACCCTGAAAAGTCGACCACCAGGCGTCACGTGCGTGAGCGCAGCTGAAGAATCTTATATGTGCGTGCAACAACGGTTCGCGTTGCACCAGTGTGTTGTTGCATAATTTTGAACGCTTGCAACCAGTAACACACACTCA]

[+] EMBL BM633633             [CCGCCCACGCGTCCGAAAACAACCTCCTCATGTTCTCACAACCATACGCACACACATGCAAAGAGGGACAAGCGATACGGGAAAATGAGGGAGGAGGTAAATAATGTTAAAAAATACCACACATCATCTTCATTAGCGGCCGTCGAGAGGAGCAAGATTATCAGCGGCAGCAGTCGTTGGTCGTAGTATCACTCCAGCACCCATTCCGAGGCGCGACGGGAACGGGTTGTGTGGGTAATGAGCGGTGGTGGTGGTGGTGGTAGTGCGGCTGCGGTTTGGCTACATCTGTCCCTGCACGGTCGCGTACGATCACAGTCGGCATCCGTCCTTCGAGCGGCCACGATCGCGATCATCATTCAGCGCAAGAGTTCGGGGTTCGTTCCAATTACGCGGTTTAAGTGCTCCAGTAAGCAGTGTAGGAAGAAACTAAAGTTTAATGCCGTTTGCGTGAACGTTACTGTAGTTTTCCGGGAGTGTTATACCGGCAAACACTCAGCACGATCGATTGAGCGACGCACAAAATTCAGAGAGAGAGACACACGCACACAGTGAATGATTCTTTGTTTACCTTTTCTGTTCACCCCCTGGGGTCACCCCCTCAGTGCAATCGGAACTGCAGTGCGTGCCGTACCGTGCCGTGCGTGCAATCGTCCTCCTCGGCAAGCGGCTACGCACGTATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM633280             [                                                                                                                                                                                                                                                                                                                               ccgCCGTCCTTCGAGCGGCCACGATCGCGATCATCATTCAGCGCAAGAGTTCGGGGTTCGTTCCAATTACGCGGTTTAAGTGCTCCAGTAAGCAGTGTAGGAAGAAACTAAAGTTTAATGCCGTTTGCGTGAACGTTACTGTAGTTTTCCGGGAGTGTTATACCGGCAAACACTCAGCACGATCGATTGAGCGACGCACAAAATTCAGAGAGAGAGACACACGCACACAGTGAATGATTCTTTGTTTACCTTTTCTGTTCACCCCCTGGGGTCACCCCCTCAGTGCAATCGGAACTGCAGTGCGTGCCGTACCGTGCCGTGCGTGCAATCGTCCTCCTCGGCAAGCGGCTACGCACGTATGCGTTACGGCTTCTCGCCCACGGCTCGATCGTGAGTAAGCAGCACGCACGTCGGTTCGGTCGAGTCGGTCGGTTCGGTTTCGCTCTCACGACGCCCTCTCACATAACACAGGAAAAAGGCCGGCTCACGCGCGGTTTCAACGCGGTGAGCAAACGCAACAGCAGTACGTCGCCTCCGTCTGATTTGGAACCGAGTCCGGTACCGTCGGCACCCTCAGTCTCGTTTTCAAACTCGGAGACCAAAGGTGACGAACGCTCCCGAGTGTGTGTGTTGGGCGCACTCGTCTCTGAA                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM634331             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccgCCCCCTCAGTGCAATCGGAACTGCAGTGCGTGCCGTACCGTGCCGTGCGTGCAATCGTCCTCCTCGGCAAGCGGCTACGCACGTATGCGTTACGGCTTCTCGCCCACGGCTCGATCGTGAGTAAGCAGCACGCACGTCGGTTCGGTCGAGTCGGTCGGTTCGGTTTCGCTCTCACGACGCCCTCTCACATAACACA GAAAAAGGCCGGCTCACGCGCGGTTTCAACGCGGTGAGCAAACGCAACAGCAGTACGTCGCCTCCGTCTGATTTGGAACCGAGTCCGGTACCGTCGGCACCCTCAGTCTCGTTTTCAAACTCGGAGACCAAAGGTGACGAACGCTCCCGAGTGTGTGTGTT GGCGCACTCGTCTCTGAAAAGTCGTCAAATACGCACGACGCACGCACAATTGTGCGACTGAAAGGGGGTTGGTTCACTGTTTGAAATTTAGAGAAACCGTCTATCACTGTTCAACCCAGCAAGCCCAAAAGTGAAAGTGAAAGTGAAATTTGGCCACCAAGAGGAAGCAGTTTTGGGGGTAGTGCTCGGACGATAAGCAACTCCAAGAACCAACCCTGAAAAGTCGACCACCAGGCGTCACGTGCGTGAGCGCAGCTGAAGAATCTTATATGTGCGTGCAACAACGGTTCGCGTTGCACCAGTGTGTTGTTGCATAATTTTGAACGCTTGCAACCAGTAACACACACTCA]




>consensus_4879#0
CCGCCCACGCGTCCGAAAACAACCTCCTCATGTTCTCACAACCATACGCACACACATGCA
AAGAGGGACAAGCGATACGGGAAAATGAGGGAGGAGGTAAATAATGTTAAAAAATACCAC
ACATCATCTTCATTAGCGGCCGTCGAGAGGAGCAAGATTATCAGCGGCAGCAGTCGTTGG
TCGTAGTATCACTCCAGCACCCATTCCGAGGCGCGACGGGAACGGGTTGTGTGGGTAATG
AGCGGTGGTGGTGGTGGTGGTAGTGCGGCTGCGGTTTGGCTACATCTGTCCCTGCACGGT
CGCGTACGATCACAGTCGGCATCCGTCCTTCGAGCGGCCACGATCGCGATCATCATTCAG
CGCAAGAGTTCGGGGTTCGTTCCAATTACGCGGTTTAAGTGCTCCAGTAAGCAGTGTAGG
AAGAAACTAAAGTTTAATGCCGTTTGCGTGAACGTTACTGTAGTTTTCCGGGAGTGTTAT
ACCGGCAAACACTCAGCACGATCGATTGAGCGACGCACAAAATTCAGAGAGAGAGACACA
CGCACACAGTGAATGATTCTTTGTTTACCTTTTCTGTTCACCCCCTGGGGTCACCCCCTC
AGTGCAATCGGAACTGCAGTGCGTGCCGTACCGTGCCGTGCGTGCAATCGTCCTCCTCGG
CAAGCGGCTACGCACGTATGCGTTACGGCTTCTCGCCCACGGCTCGATCGTGAGTAAGCA
GCACGCACGTCGGTTCGGTCGAGTCGGTCGGTTCGGTTTCGCTCTCACGACGCCCTCTCA
CATAACACAGAAAAAGGCCGGCTCACGCGCGGTTTCAACGCGGTGAGCAAACGCAACAGC
AGTACGTCGCCTCCGTCTGATTTGGAACCGAGTCCGGTACCGTCGGCACCCTCAGTCTCG
TTTTCAAACTCGGAGACCAAAGGTGACGAACGCTCCCGAGTGTGTGTGTTGGCGCACTCG
TCTCTGAAAAGTCGTCAAATACGCACGACGCACGCACAATTGTGCGACTGAAAGGGGGTT
GGTTCACTGTTTGAAATTTAGAGAAACCGTCTATCACTGTTCAACCCAGCAAGCCCAAAA
GTGAAAGTGAAAGTGAAATTTGGCCACCAAGAGGAAGCAGTTTTGGGGGTAGTGCTCGGA
CGATAAGCAACTCCAAGAACCAACCCTGAAAAGTCGACCACCAGGCGTCACGTGCGTGAG
CGCAGCTGAAGAATCTTATATGTGCGTGCAACAACGGTTCGCGTTGCACCAGTGTGTTGT
TGCATAATTTTGAACGCTTGCAACCAGTAACACACACTCA

consensusID : consensus_4879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCGCGGACGCGTGGGCAGAAAAAGGCCGGCTCACGCGCGGTTTCAACGCGGTGAGCAAACGCAACAGCAGTACGTCGCCTCCGTCTGATTTCGAACCGAGTCCGGTACCGTCGGCACCCTCAGTCTCGTTTTCAAACTCGGAGACCAAAGGTGACGAACGCTCCCGAGTGTGTGTGTTGGCGCACTCGTCTCTGAAAAGTCGTCAAATACGCACGACGCACGCACAATTGTGCGACTGAAAGGGGGTTGGTTCACTGTTTGAAATTTAGAGAAACCGTCTATCACTGTTCAACCCAGCAAGCCCAAAAGTGAAAGTGAAAGTGAAATTTGGCCACCAAGAGGAAGCAGTTTTGGGGGTAGTGCTCGGACGATAAGCAACTCCAAGAACCAACCCTGAAAAGTCGACCACCAGGCGTCACGTGCGTGAGCGCAGCTGAAGAATCTTATATGTGCGTGCAACAACGGTTCGCGTTGCACCAGTGTGTTGTTGCATAATTTTGAACGCTTGCAACCAGTAACACACACTCATACGTGGCAACCTCGTCCTCGTTTTCTACGAAACCGAAACCGCCAAAAGGGCACCGGCAGGGTAAGGTGATGTAGAAAACGGCTGCCAGCCAGCCAGCCAGCTCGGTGCATCGGTTTGATGGTGGCAAACCGAAAATAGCGGACAGAAAAAAGTT]

[+] EMBL BM639661             [CCGCGGACGCGTGGGCAGAAAAAGGCCGGCTCACGCGCGGTTTCAACGCGGTGAGCAAACGCAACAGCAGTACGTCGCCTCCGTCTGATTTCGAACCGAGTCCGGTACCGTCGGCACCCTCAGTCTCGTTTTCAAACTCGGAGACCAAAGGTGACGAACGCTCCCGAGTGTGTGTGTTGGCGCACTCGTCTCTGAAAAGTCGTCAAATACGCACGACGCACGCACAATTGTGCGACTGAAAGGGGGTTGGTTCACTGTTTGAAATTTAGAGAAACCGTCTATCACTGTTCAACCCAGCAAGCCCAAAAGTGAAAGTGAAAGTGAAATTTGGCCACCAAGAGGAAGCAGTTTTGGGGGTAGTGCTCGGACGATAAGCAACTCCAAGAACCAACCCTGAAAAGTCGACCACCAGGCGTCACGTGCGTGAGCGCAGCTGAAGAATCTTATATGTGCGTGCAACAACGGTTCGCGTTGCACCAGTGTGTTGTTGCATAATTTTGAACGCTTGCAACCAGTAACACACACTCATACGTGGCAACCTCGTCCTCGTTTTCTACGAAACCGAAACCGCCAAAAGGGCACCGGCAGGGTAAGGTGATGTAGAAAACGGCTGCCAGCCAGCCAGCCAGCTCGGTGCATCGGTTTGATGGTGGCAAACCGAAAATAGCGGACAGAAAAAAGTT]




>consensus_4879#1
CCGCGGACGCGTGGGCAGAAAAAGGCCGGCTCACGCGCGGTTTCAACGCGGTGAGCAAAC
GCAACAGCAGTACGTCGCCTCCGTCTGATTTCGAACCGAGTCCGGTACCGTCGGCACCCT
CAGTCTCGTTTTCAAACTCGGAGACCAAAGGTGACGAACGCTCCCGAGTGTGTGTGTTGG
CGCACTCGTCTCTGAAAAGTCGTCAAATACGCACGACGCACGCACAATTGTGCGACTGAA
AGGGGGTTGGTTCACTGTTTGAAATTTAGAGAAACCGTCTATCACTGTTCAACCCAGCAA
GCCCAAAAGTGAAAGTGAAAGTGAAATTTGGCCACCAAGAGGAAGCAGTTTTGGGGGTAG
TGCTCGGACGATAAGCAACTCCAAGAACCAACCCTGAAAAGTCGACCACCAGGCGTCACG
TGCGTGAGCGCAGCTGAAGAATCTTATATGTGCGTGCAACAACGGTTCGCGTTGCACCAG
TGTGTTGTTGCATAATTTTGAACGCTTGCAACCAGTAACACACACTCATACGTGGCAACC
TCGTCCTCGTTTTCTACGAAACCGAAACCGCCAAAAGGGCACCGGCAGGGTAAGGTGATG
TAGAAAACGGCTGCCAGCCAGCCAGCCAGCTCGGTGCATCGGTTTGATGGTGGCAAACCG
AAAATAGCGGACAGAAAAAAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4879#0      CCGCCCACGCGTCCGAAAACAACCTCCTCATGTTCTCACAACCATACGCACACACATGCA 60
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      AAGAGGGACAAGCGATACGGGAAAATGAGGGAGGAGGTAAATAATGTTAAAAAATACCAC 120
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      ACATCATCTTCATTAGCGGCCGTCGAGAGGAGCAAGATTATCAGCGGCAGCAGTCGTTGG 180
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      TCGTAGTATCACTCCAGCACCCATTCCGAGGCGCGACGGGAACGGGTTGTGTGGGTAATG 240
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      AGCGGTGGTGGTGGTGGTGGTAGTGCGGCTGCGGTTTGGCTACATCTGTCCCTGCACGGT 300
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      CGCGTACGATCACAGTCGGCATCCGTCCTTCGAGCGGCCACGATCGCGATCATCATTCAG 360
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      CGCAAGAGTTCGGGGTTCGTTCCAATTACGCGGTTTAAGTGCTCCAGTAAGCAGTGTAGG 420
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      AAGAAACTAAAGTTTAATGCCGTTTGCGTGAACGTTACTGTAGTTTTCCGGGAGTGTTAT 480
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      ACCGGCAAACACTCAGCACGATCGATTGAGCGACGCACAAAATTCAGAGAGAGAGACACA 540
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      CGCACACAGTGAATGATTCTTTGTTTACCTTTTCTGTTCACCCCCTGGGGTCACCCCCTC 600
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      AGTGCAATCGGAACTGCAGTGCGTGCCGTACCGTGCCGTGCGTGCAATCGTCCTCCTCGG 660
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      CAAGCGGCTACGCACGTATGCGTTACGGCTTCTCGCCCACGGCTCGATCGTGAGTAAGCA 720
consensus_4879#1      ------------------------------------------------------------
                                                                                  

consensus_4879#0      GCACGCACGTCGGTTCGGTCGAGTCGGTCGGTTCGGTTTCGCTCTCACGACGCCCTCTCA 780
consensus_4879#1      -----------------------------------------------------CCGCGGA 7
                                                                           ** *  *

consensus_4879#0      CATA-ACACAGAAAAAGGCCGGCTCACGCGCGGTTTCAACGCGGTGAGCAAACGCAACAG 839
consensus_4879#1      CGCGTGGGCAGAAAAAGGCCGGCTCACGCGCGGTTTCAACGCGGTGAGCAAACGCAACAG 67
                      *       ****************************************************

consensus_4879#0      CAGTACGTCGCCTCCGTCTGATTTGGAACCGAGTCCGGTACCGTCGGCACCCTCAGTCTC 899
consensus_4879#1      CAGTACGTCGCCTCCGTCTGATTTCGAACCGAGTCCGGTACCGTCGGCACCCTCAGTCTC 127
                      ************************ ***********************************

consensus_4879#0      GTTTTCAAACTCGGAGACCAAAGGTGACGAACGCTCCCGAGTGTGTGTGTTGGCGCACTC 959
consensus_4879#1      GTTTTCAAACTCGGAGACCAAAGGTGACGAACGCTCCCGAGTGTGTGTGTTGGCGCACTC 187
                      ************************************************************

consensus_4879#0      GTCTCTGAAAAGTCGTCAAATACGCACGACGCACGCACAATTGTGCGACTGAAAGGGGGT 1019
consensus_4879#1      GTCTCTGAAAAGTCGTCAAATACGCACGACGCACGCACAATTGTGCGACTGAAAGGGGGT 247
                      ************************************************************

consensus_4879#0      TGGTTCACTGTTTGAAATTTAGAGAAACCGTCTATCACTGTTCAACCCAGCAAGCCCAAA 1079
consensus_4879#1      TGGTTCACTGTTTGAAATTTAGAGAAACCGTCTATCACTGTTCAACCCAGCAAGCCCAAA 307
                      ************************************************************

consensus_4879#0      AGTGAAAGTGAAAGTGAAATTTGGCCACCAAGAGGAAGCAGTTTTGGGGGTAGTGCTCGG 1139
consensus_4879#1      AGTGAAAGTGAAAGTGAAATTTGGCCACCAAGAGGAAGCAGTTTTGGGGGTAGTGCTCGG 367
                      ************************************************************

consensus_4879#0      ACGATAAGCAACTCCAAGAACCAACCCTGAAAAGTCGACCACCAGGCGTCACGTGCGTGA 1199
consensus_4879#1      ACGATAAGCAACTCCAAGAACCAACCCTGAAAAGTCGACCACCAGGCGTCACGTGCGTGA 427
                      ************************************************************

consensus_4879#0      GCGCAGCTGAAGAATCTTATATGTGCGTGCAACAACGGTTCGCGTTGCACCAGTGTGTTG 1259
consensus_4879#1      GCGCAGCTGAAGAATCTTATATGTGCGTGCAACAACGGTTCGCGTTGCACCAGTGTGTTG 487
                      ************************************************************

consensus_4879#0      TTGCATAATTTTGAACGCTTGCAACCAGTAACACACACTCA------------------- 1300
consensus_4879#1      TTGCATAATTTTGAACGCTTGCAACCAGTAACACACACTCATACGTGGCAACCTCGTCCT 547
                      *****************************************                   

consensus_4879#0      ------------------------------------------------------------
consensus_4879#1      CGTTTTCTACGAAACCGAAACCGCCAAAAGGGCACCGGCAGGGTAAGGTGATGTAGAAAA 607
                                                                                  

consensus_4879#0      ------------------------------------------------------------
consensus_4879#1      CGGCTGCCAGCCAGCCAGCCAGCTCGGTGCATCGGTTTGATGGTGGCAAACCGAAAATAG 667
                                                                                  

consensus_4879#0      ----------------
consensus_4879#1      CGGACAGAAAAAAGTT 683