These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4892#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [CTTGAGCTGTGACCGGCAGCAGTTAATCTCAGTACTCGCTATTCGCTGGTGCTACCTCTGCAATCTACCCCAAATACGGCTAATCAATAGCAGGCCCCTTATCACAACGGGTTGATACAATATCTGTACCCTGGCCGTGTATACTTAGCACGTAGATTAGTCAAGGTAAATCCCAAATACCTAGCTACCTTTGTGTTATCTAGTCCGCATACTTCACCGTCAACTATAATTGCCTCGAACAATCAATTCAGAGGGTTGTTTCGGTGTGTTTGGTATGTGTGGCTGTGTGTCTCCCGGACGTAGTTGAATGGTGCTATNNGATGAGGCAATGCTTCGATGTACGGGCATGACTTCATGGCTGGAGC] [+] EMBL CF542070 [CTTGAGCTGTGACCGGCAGCAGTTAATCTCAGTACTCGCTATTCGCTGGTGCTACCTCTGCAATCTACCCCAAATACGGCTAATCAATAGCAGGCCCCTTATCACAACGGGTTGATACAATATCTGTACCCTGGCCGTGTATACTTAGCACGTAGATTAGTCAAGGTAAATCCCAAATACCTAGCTACCTTTGTGTTATCTAGTCCGCATACTTCACCGTCAACTATAATTGCCTCGAACAATCAATTCAGAGGGTTGTTTCGGTGTGTTTGGTATGTGTGGCTGTGTGTCTCCCGGACGTAGTTGAATGGTGCTATNNGATGAGGCAATGCTTCGATGTACGGGCATGACTTCATGGCTGGAGC] consensusID : consensus_4892#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 295 fasta sequence [AGCCCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAAAAGCAAACACATGTCCTTCACAGATAGTGATGTGAAAGTTTCGTTCCATTTTTTTATTGTAGTTTTTTGCGAGCAGAACCAAACACGCCACAACACAATGCCCTATTCTTAAACGAATAATTGTCATAAGCTCCAGCCACGAGTCATGCCCGTTCGTGGAAGCATTGCCTCATCAATAGCACCATTCAACAACGTCCGGGAGACACACAGCCACACATACCAAACACACTGAAACAACCGTCTG] [-] EMBL CNS08WJX [AGCCCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAAAAGCAAACACATGTCCTTCACAGATAGTGATGTGAAAGTTTCGTTCCATTTTTTTATTGTAGTTTTTTGCGAGCAGAACCAAACACGCCACAACACAATGCCCTATTCTTAAACGAATAATTGTCATAAGCTCCAGCCACGAGTCATGCCCGTTCGTGGAAGCATTGCCTCATCAATAGCACCATTCAACAACGTCCGGGAGACACACAGCCACACATACCAAACACACTGAAACAACCGTCTG] [+] EMBL CNS08WJY [ GATAGTGATGTGAAAGTTTCGTTCCATTTTTTTATTGTAGTTTTTTGCGAGCAGAACCAAACACGCCACAACACAATGCCCTATTCTTAAACGAATAATTGTCATAAGCCCCAGCCACGAGTAAT ] consensusID : consensus_4892#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence [GCAATGCTTCGATGTACGGGNCATGACTCGNTGGCTGGAGNCTTATGACAATTATTCGTTTAAGAATAGGGCATTGTGTTGTGTCGTGTTTGGTTCTGCTCGCAAAAAACTACAATAAAAAAATGGAACGAAACNTTTCACATNCACTNATNCTNGCAAAAAAAAAA] [+] EMBL CF541824 [GCAATGCTTCGATGTACGGGNCATGACTCGNTGGCTGGAGNCTTATGACAATTATTCGTTTAAGAATAGGGCATTGTGTTGTGTCGTGTTTGGTTCTGCTCGCAAAAAACTACAATAAAAAAATGGAACGAAACNTTTCACATNCACTNATNCTNGCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4892#0 CTTGAGCTGTGACCGGCAGCAGTTAATCTCAGTACTCGCTATTCGCTGGTGCTACCTCTG 60 consensus_4892#2 ------------------------------------------------------------ consensus_4892#1 ------------------------------------------------------------ consensus_4892#0 CAATCTACCCCAAATACGGCTAATCAATAGCAGGCCCCTTATCACAACGGGTTGATACAA 120 consensus_4892#2 ------------------------------------------------------------ consensus_4892#1 -----------------AGCCCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTTT 43 consensus_4892#0 TATCTGTACCCTGGCCGTGTATACTTAGCACGTAGATTAGTCAAGGTAAATCCCAAATAC 180 consensus_4892#2 ------------------------------------------------------------ consensus_4892#1 TTTGTTAAAAGCAAACACATGTCCTTCACAGATAGTGATGTGAAAGTTTCGTTCCATTTT 103 consensus_4892#0 CTAGCTACCTTTGTGTTAT----CTAGTCCGCATACTTCACCGTCAACTATAATTGC--C 234 consensus_4892#2 ------GCAATGCTTCGAT----GTACGGGNCATGACTCGNTGGCTGG-AGNCTTAT--G 47 consensus_4892#1 TTTATTGTAGTTTTTTGCGAGCAGAACCAAACACGCCACAACACAATGCCCTATTCTTAA 163 * * * ** * ** consensus_4892#0 TCGAACAATCAATTCAGAGGGTTGTTTCGGTGTGTTTGGTATGTGTGGCTGTGTGTCTCC 294 consensus_4892#2 ACAATTATTCGTTTAAGAATAGGGCATTG-TGT-TGTGTCGTGTTTGGTTCTG---CTCG 102 consensus_4892#1 ACGAATAATTGTCATAAGCTCCAGCCACG-AGTCATGCCCGTTCGTGGAAGCAT-TGCCT 221 * * * * * * * ** * *** * consensus_4892#0 CGGACGTAGTTGAATGGTGCTATNNGATGAGGCAATGCTTCGATGTACGGGCATGACTTC 354 consensus_4892#2 CAAA-AAACTACAATAAAAAAATGGAACGAAACN----TTTCACATNCACTNATNCTNGC 157 consensus_4892#1 CATCAATAGCACCATTCAACAACGTCCGGGAGACACACAGCCACACATACCAAACACACT 281 * * ** * * * * consensus_4892#0 ATGGCTGGAGC--- 365 consensus_4892#2 AAAAAAAAAA---- 167 consensus_4892#1 GAAACAACCGTCTG 295 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||