These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1052 fasta sequence [AGGCAGAATCGCNCACGAGGTTGCTCATTGTCTGTTCCGTTTAGTGCAGCGTAACATAAATATATAGATTGAATTATTGCACTCACACACACAAAAAAAAACACAGTATGTTAACGAATTGTGCCGACGCATTAGGGCGAAACAGAGAGAAACGCTTGGCATAATATAAATGTATACATAAATACACAACAAAACAGCGTAACAGCATAGCAGCACACAGCATATAGAGCAGCGAATCCCTCTTTCCCCCCACACACGCCACAGCTACAATGCACTACGAACCACAATTATAGGAGAAAGAGCAGAAGAAGAAGGTATTAGAATGTGTTTGCAAAACAAAAAAGAACCCTTAAAATAGTAACGGTAGACCTCAGCAACCAGATAACTGATGATGTATGGCAAAAAGCGTATTAGAGAAGATGAGGGAGAAATGTATTGTCATTTATGAAAAAACAAANAGATTTAACAGAATTGCCCCCCTCCTTTCTTATCCTTCGACAAAACGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTGATAGTGATAGACGACATCCTTTAGATCATATTGCAAGAGAATTTAATCACCCTTTAACAACAACAAAAAAAGCGTTAGTACAGATTGCGAACTACAAAAGCGAAAACGAAAGGAGAAACAGAGCAGAGTAGCATGGCNTTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATAGNAGGTAAGAACCAAGAAGATTGAGANACACNCATNGTTTTTGGAAAAAAAAACGACCAAAAAGGTTCCCATGGGTTTGAATTNAAGGGNGTCTNANACCAAAAGACCNCAGGAGAAAGGCAACAGAGCAGGGGGCAAANTCACTTTACCAGGGAACNGNCAAACACAAAAGGGCCCCGGGTTGTGAAGCNCATTTTTAACCACCACAGANGNNACAGAACCTCCNGTTTGAGTCCCACCGTGTCATCCGCAGTTTGAGAGCGANCCNTGTCACAAGCCAGAGTGGTAAGCCACAGANACACAGAGANTTCGCAAGCGGGACAACCACAGCCG] [+] EMBL BX467476 [AGGCAGAATCGCNCACGAGGTTGCTCATTGTCTGTTCCGTTTAGTGCAGCGTAACATAAATATATAGATTGAATTATTGCACTCACACACACAAAAAAAAACACAGTATGTTAACGAATTGTGCCGACGCATTAGGGCGAAACAGAGAGAAACGCTTGGCATAATATAAATGTATACATAAATACACAACAAAACAGCGTAACAGCATAGCAGCACACAGCATATAGAGCAGCGAATCCCTCTTTCCCCCCACACACGCCACAGCTACAATGCACTACGAACCACAATTATAGGAGAAAGAGCAGAAGAAGAAGGTATTAGAATGTGTTTGCAAAACAAAAAAGAACCCTTAAAATAGTAACGGTAGACCTCAGCAACCAGATAACTGATGATGTATGGCAAAAAGCGTATTAGAGAAGATGAGGGAGAAATGTATTGTCATTTATGAAAAAACAAANAGATTTAACAGAATTGCCCCCCTCCTTTCTTATCCTTCGACAAAACGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTGATAGTGATAGACGACATCCTTTAGATCATATTGCAAGAGAATTTAATCACCCTTTAACAACAACAAAAAAAGCGTTAGTACAGATTGCGAACTACAAAAGCGAAAACGAAAGGAGAAACAGAGCAGAGTAGCATGGCNTTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATAGNAGGTAAGAACCAAGAAGATTGAGANACACNCATNGTTTTTGGAAAAAAAAACGACCAAAAAGGTTCCCATGGGTTTGAATTNAAGGGNGTCTNANACCAAAAGACCNCAGGAGAAAGGCAACAGAGCAGGGGGCAAANTCACTTTACCAGGGAACNGNCAAACACAAAAGGGCCCCGGGTTGTGAAGCNCATTTTTAACCACCACAGANGNNACAGAACCTCCNGTTTGAGTCCCACCGTGTCATCCGCAGTTTGAGAGCGANCCNTGTCACAAGCCAGAGTGGTAAGCCACAGANACACAGAGANTTCGCAAGCGGGACAACCACAGCCG] consensusID : consensus_4894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 868 fasta sequence [GTATTAGAGAAGATGAGGGAGAAATGTATTGTCATTTATGAAAAAAAAAAGATTTAACAGAATTGCCCCCCTCCTTTCTTATCCTTCGACAAAACGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTGATAGTGATAGACGACTCCTTTAGATAATATTGCAGAGAATTTAATCACCCTTTAACAACAACAAAAAAAACGTTTAGTACAGATTGCGAACTACAAAAGCGAAAACAAAAGAGAAACAGAGAGAGTAGCATTGCATTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATAGAGTAGAACAAGAGATGAGAACACATGTTGAAAACAACTCTGTTATAGGTTACAAAACAGAGCAACAGGAATATAAAGAAGAAAAAGGCCGCTAAGCATTACACAAAAAAAAACTCGTTATTCACTTCTCTTTAGTACTTCAAACAGTACACAAAAAAAACTACAAAAAGCAAACAACATTGAAAGGAAAAGCCCCCACACACAAACACACACTAACATTAGAAGAAGAGAATTAGAGCGATAGAGTATAATAATAGCTTAACAAACAAACAAAAAAAAACATTTCACAACCCCTTTTCGCCCGCGTCCGTTGTTTGTGAAATTGGCAAATATGAAAGCAAAATTGGATTGGACTGGAACAAAAAAACATTAGAAAATTTAACAACTTTCGCTGAATCTCTCCCACTCTCTCTCTCTCTTTTTACGACTAACTCGCAATTTTTGGCGACACGAGTGGGGATGGGGGAAAAGAAGAATGAAGAAATGATAAAATGAGGTTGGTGCGCAGTAAAACAAAACCAAGAATACAATATACGAAATGATACGATGAAGCAAAAAAAA] [+] EMBL AGA281728 [GTATTAGAGAAGATGAGGGAGAAATGTATTGTCATTTATGAAAAAAAAAAGATTTAACAGAATTGCCCCCCTCCTTTCTTATCCTTCGACAAAACGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTGATAGTGATAGACGACTCCTTTAGATAATATTGCAGAGAATTTAATCACCCTTTAACAACAACAAAAAAAACGTTTAGTACAGATTGCGAACTACAAAAGCGAAAACAAAAGAGAAACAGAGAGAGTAGCATTGCATTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATAGAGTAGAACAAGAGATGAGAACACATGTTGAAAACAACTCTGTTATAGGTTACAAAACAGAGCAACAGGAATATAAAGAAGAAAAAGGCCGCTAAGCATTACACAAAAAAAAACTCGTTATTCACTTCTCTTTAGTACTTCAAACAGTACACAA ] [+] EMBL BX623223 [ TTTCTTATCCTTCGACTAANCGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTGATAGTGATAGACGACTCCTTTAGATAATATTGCAGAGAATTTAATCACCCTTTAACAACAACAAAAAAAACGTTTAGTACAGATTGCGAACTACAAAAGCGAAAACAAAAGAGAAACAGAGAGAGTAGCATTGCATTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATAGAGTAGAACAAGAGATGAGAACACATGTTGAAAACAACTCTGTTATAGGTTACAAAAGAGAGCAACAGGAATATAAAGAAGAAAAAGCCCGCTAAGCATTACACAAAAAAAAACTCGTTATTCACTTCTCTTTAGTACTTCAAACAGTAAACAAAAAAAACTACAAAAAGCAAACAACATTGAAAGGAAAAGCCCCCACACACAAACACACACTAACATTAGAAGAAGAGAATTAGAGCGATAGAGTATAATAATAGCTTAACAAACAAACAAAAAAAAACATTTCACAACCCCTTTTCGCCCGCGTCCGTTGTTTGTGAAATTGGCAAATATGAAAGCAAAATTGGATTGGACTGGAA ] [-] EMBL AGA280032 [ TAATAGCTTAACAAACAAACAAAAAAAAACATTTCACAACCCCTTTTCGCCCGCGTCCGTTGTTTGTGAAATTGGCAAATATGAAAGCAAAATTGGATTGGACTGGAACAAAAAAACATTAGAAAATTTAACAACTTTCGCTGAATCTCTCCCACTCTCTCTCTCTCTTTTTACGACTAACTCGCAATTTTTGGCGACACGAGTGGGGATGGGGGAAAAGAAGAATGAAGAAATGATAAAATGAGGTTGGTGCGCAGTAAAACAAAACCAAGAATACAATATACGAAATGATACGATGAAGCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4894#0 AGGCAGAATCGCNCACGAGGTTGCTCATTGTCTGTTCCGTTTAGTGCAGCGTAACATAAA 60 consensus_4894#1 ------------------------------------------------------------ consensus_4894#0 TATATAGATTGAATTATTGCACTCACACACACAAAAAAAAACACAGTATGTTAACGAATT 120 consensus_4894#1 ------------------------------------------------------------ consensus_4894#0 GTGCCGACGCATTAGGGCGAAACAGAGAGAAACGCTTGGCATAATATAAATGTATACATA 180 consensus_4894#1 ------------------------------------------------------------ consensus_4894#0 AATACACAACAAAACAGCGTAACAGCATAGCAGCACACAGCATATAGAGCAGCGAATCCC 240 consensus_4894#1 ------------------------------------------------------------ consensus_4894#0 TCTTTCCCCCCACACACGCCACAGCTACAATGCACTACGAACCACAATTATAGGAGAAAG 300 consensus_4894#1 ------------------------------------------------------------ consensus_4894#0 AGCAGAAGAAGAAGGTATTAGAATGTGTTTGCAAAACAAAAAAGAACCCTTAAAATAGTA 360 consensus_4894#1 ------------------------------------------------------------ consensus_4894#0 ACGGTAGACCTCAGCAACCAGATAACTGATGATGTATGGCAAAAAGCGTATTAGAGAAGA 420 consensus_4894#1 -----------------------------------------------GTATTAGAGAAGA 13 ************* consensus_4894#0 TGAGGGAGAAATGTATTGTCATTTATGAAAAAACAAANAGATTTAACAGAATTGCCCCCC 480 consensus_4894#1 TGAGGGAGAAATGTATTGTCATTTATGAAAAAA--AAAAGATTTAACAGAATTGCCCCCC 71 ********************************* ** ********************** consensus_4894#0 TCCTTTCTTATCCTTCGACAAAACGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTG 540 consensus_4894#1 TCCTTTCTTATCCTTCGACAAAACGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTG 131 ************************************************************ consensus_4894#0 ATAGTGATAGACGACATCCTTTAGATCATATTGCAAGAGAATTTAATCACCCTTTAACAA 600 consensus_4894#1 ATAGTGATAGACGAC-TCCTTTAGATAATATTGCA-GAGAATTTAATCACCCTTTAACAA 189 *************** ********** ******** ************************ consensus_4894#0 CAACAAAAAAAGCGTT-AGTACAGATTGCGAACTACAAAAGCGAAAACGAAAGGAGAAAC 659 consensus_4894#1 CAACAAAAAAAACGTTTAGTACAGATTGCGAACTACAAAAGCGAAAAC-AAAAGAGAAAC 248 *********** **** ******************************* *** ******* consensus_4894#0 AGAGCAGAGTAGCATGGCNTTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATA 719 consensus_4894#1 AGAG-AGAGTAGCATTGCATTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATA 307 **** ********** ** ***************************************** consensus_4894#0 GNA---GGTAAGAACCAAGAAGA----TTGAGANACACNC----ATNGTTTTTGGAAAAA 768 consensus_4894#1 GAGTAGAACAAGAGATGAGAACACATGTTGAAAACAACTCTGTTATAGGTTACAAAACAG 367 * **** **** * **** * ** * ** * ** ** * consensus_4894#0 AA------------AACGACCAAAAAGGTTCCCATGGGTTTGAATTNAAGGGNGTCTNAN 816 consensus_4894#1 AGCAACAGGAATATAAAGAAGAAAAAGGCCGCTAAGCATTACACAAAAAAAAACTCGTTA 427 * ** ** ******* * * * ** * ** ** consensus_4894#0 ACCA-----------------AAAGACCNCAGGAGAAAGGCAACAGAG------------ 847 consensus_4894#1 TTCACTTCTCTTTAGTACTTCAAACAGTACACAAAAAAAACTACAAAAAGCAAACAACAT 487 ** *** * ** * *** * *** * consensus_4894#0 CAGGGGGCAAANTCACTTTACCAGGGAACNGNCAAACAC-----AAAAGGGCCCCGGGTT 902 consensus_4894#1 TGAAAGGAAAAGCCCCCACACACAAACACACACTAACATTAGAAGAAGAGAATTAGAGCG 547 ** *** * * ** ** * **** ** * * * consensus_4894#0 GTGAAGCNCATT-----TTTAACCACCACAGANGNNACAGAACCTCCNGTTTGAGTCCCA 957 consensus_4894#1 ATAGAGTATAATAATAGCTTAACAAACAAACAAAAAAAAACATTTCACAACCCCTTTTCG 607 * ** * * ***** * ** * * * * * ** * * consensus_4894#0 CCGTGTCATCCGCAGTTTGAGAGCGANCCNTGTCACAAGCCAGAGTGGTAAGCCACAGAN 1017 consensus_4894#1 CCCG--CGTCCGTTGTTTGTGAAATTGGCAAATATGAAAGCAAAATTGGATTGGACTGGA 665 ** * **** ***** ** * * ** ** * * * * ** * consensus_4894#0 ACACAGAGAN-TTCGCAAGCGGGACAACCACAGCCG------------------------ 1052 consensus_4894#1 ACAAAAAAACATTAGAAAATTTAACAACTTTCGCTGAATCTCTCCCACTCTCTCTCTCTC 725 *** * * * ** * ** ***** ** * consensus_4894#0 ------------------------------------------------------------ consensus_4894#1 TTTTTACGACTAACTCGCAATTTTTGGCGACACGAGTGGGGATGGGGGAAAAGAAGAATG 785 consensus_4894#0 ------------------------------------------------------------ consensus_4894#1 AAGAAATGATAAAATGAGGTTGGTGCGCAGTAAAACAAAACCAAGAATACAATATACGAA 845 consensus_4894#0 ----------------------- consensus_4894#1 ATGATACGATGAAGCAAAAAAAA 868 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||