These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence [CGAGCAGAACCGGCTCGAGTTTGCGGTGTAGATACTCGAGCAGGGCTTCTACACGGTGCCGGTGTACAAGCAGCGCGAACCGACGCCCCCGCCCGACTACCTCGCCGCGGAGCGGGCGATGATGCCGGGCCCGATGGACATCGGGGACGACGCGCTCCGGCCGATCACGAGCAGCGAGTGCCGGTTTCTGGTGCGCTTCCTCTACCAGCTCAGCAGCAAGCTGAACGTGATGTTCGGCGACGACCTGCAGCGGCTGTGGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCTCGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAAAACGCTCGTTCGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACACCTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAGCTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGGCAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGAGTGAGGCGGGGGGTCTGGGCGATTTCCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGGAATTGGCATAGATTATATTTAGACCATATGCTAAGCGAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTGTGTGCAGTTCTTCTGCACC] [+] EMBL BX606162 [CGAGCAGAACCGGCTCGAGTTTGCGGTGTAGATACTCGAGCAGGGCTTCTACACGGTGCCGGTGTACAAGCAGCGCGAACCGACGCCCCCGCCCGACTACCTCGCCGCGGAGCGGGCGATGATGCCGGGCCCGATGGACATCGGGGACGACGCGCTCCGGCCGATCACGAGCAGCGAGTGCCGGTTTCTGGTGCGCTTCCTCTACCAGCTCAGCAGCAAGCTGAACGTGATGTTCGGCGACGACCTGCAGCGGCTGTGGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCTCGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAAAACGCTCGTTCGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACACCTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAGCTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGGCAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGAGTGAGGCGGGGGGTCTGGGCGATTTCCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGGAATTGGCATAGATTATATTTAGACCATATGCTAAGCGAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTGTGTGCAGTTCTTCTGCACC] consensusID : consensus_4903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 762 fasta sequence [GGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCTCGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAAAACGCTCGTACGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACACCTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAGCTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGGCAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGGGTGAGGCGGGGGGTTTGGGCGATTTCCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGGAATTGGCATAGATTATATTTAGACCATATGCTAAGCTAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTAACGCCGCGCCACAAAGCAAATCACAAGCTGTGTGCAGTTCTTCTGCACCTTAGGATAGAAAGGGAAAATTATAGTATATTTACTTCGTTAGTAAAATATTCAAACAAAACCTTTGAGCCTGTTTACGTTGAATTTAATTTTCACGAACTGAATTATTCACCATTGTACAATAGTTCACTGAGCAATAGTTTCTTCAGGTTAAATAAAAATAAACCCTGAAAAAAAA] [+] EMBL BX614657 [GGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCTCGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAAAACGCTCGTACGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACACCTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAGCTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGGCAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGGGTGAGGCGGGGGGTTTGGGCGATTTCCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGGAATTGGCATAGATTATATTTAGACCATATGCTAAGCTAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTAACGCCGCGCCACAAAGCAAATCACAAGCTGTGT ] [+] EMBL BX614352 [ GACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCTCGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAAAACGCTCGTACGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACACCTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAGCTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGGCAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGGGTGAGGCGGGGGGTTTGGGCGATTTCCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGGAATTGGCATAGATTATATTTAGACCATATGCTAAGCTAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTAACGCCGCGCCA ] [-] EMBL AGA280274 [ AGGAATTGGCATAGATTATATTTGGCCCATATGCTAAGCGAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTAACGCCGCGCCACAAAGCAAATCACAAGCTGTGTGCAGTTCTTCTGCACCTTAGGATAGAAAGGGAAAATTATAGTATATTTACTTCGTTAGTAAAATATTCAAACAAAACCTTTGAGCCTGTTTACGTTGAATTTAATTTTCACGAACTGAATTATTCACCATTGTACAATAGTTCACTGAGCAATAGTTTCTTCAGGTTAAATAAAAATAAACCCTGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4903#0 CGAGCAGAACCGGCTCGAGTTTGCGGTGTAGATACTCGAGCAGGGCTTCTACACGGTGCC 60 consensus_4903#1 ------------------------------------------------------------ consensus_4903#0 GGTGTACAAGCAGCGCGAACCGACGCCCCCGCCCGACTACCTCGCCGCGGAGCGGGCGAT 120 consensus_4903#1 ------------------------------------------------------------ consensus_4903#0 GATGCCGGGCCCGATGGACATCGGGGACGACGCGCTCCGGCCGATCACGAGCAGCGAGTG 180 consensus_4903#1 ------------------------------------------------------------ consensus_4903#0 CCGGTTTCTGGTGCGCTTCCTCTACCAGCTCAGCAGCAAGCTGAACGTGATGTTCGGCGA 240 consensus_4903#1 ------------------------------------------------------------ consensus_4903#0 CGACCTGCAGCGGCTGTGGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCT 300 consensus_4903#1 -----------------GGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCT 43 ******************************************* consensus_4903#0 CGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAA 360 consensus_4903#1 CGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAA 103 ************************************************************ consensus_4903#0 AACGCTCGTTCGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACAC 420 consensus_4903#1 AACGCTCGTACGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACAC 163 ********* ************************************************** consensus_4903#0 CTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAG 480 consensus_4903#1 CTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAG 223 ************************************************************ consensus_4903#0 CTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGG 540 consensus_4903#1 CTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGG 283 ************************************************************ consensus_4903#0 CAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGAGTGAGGCGGGGGGTCTGGGCGATTT 600 consensus_4903#1 CAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGGGTGAGGCGGGGGGTTTGGGCGATTT 343 ********************************** ************** ********** consensus_4903#0 CCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGG 660 consensus_4903#1 CCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGG 403 ************************************************************ consensus_4903#0 AATTGGCATAGATTATATTTAGACCATATGCTAAGCGAGGTAGAACGAGCGCAGTAAACC 720 consensus_4903#1 AATTGGCATAGATTATATTTAGACCATATGCTAAGCTAGGTAGAACGAGCGCAGTAAACC 463 ************************************ *********************** consensus_4903#0 AATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGT 780 consensus_4903#1 AATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGT 523 ************************************************************ consensus_4903#0 GGAAGCTCACCT------------------------------GTGTGCAGTTCTTCTGCA 810 consensus_4903#1 GGAAGCTCACCTAACGCCGCGCCACAAAGCAAATCACAAGCTGTGTGCAGTTCTTCTGCA 583 ************ ****************** consensus_4903#0 CC---------------------------------------------------------- 812 consensus_4903#1 CCTTAGGATAGAAAGGGAAAATTATAGTATATTTACTTCGTTAGTAAAATATTCAAACAA 643 ** consensus_4903#0 ------------------------------------------------------------ consensus_4903#1 AACCTTTGAGCCTGTTTACGTTGAATTTAATTTTCACGAACTGAATTATTCACCATTGTA 703 consensus_4903#0 ----------------------------------------------------------- consensus_4903#1 CAATAGTTCACTGAGCAATAGTTTCTTCAGGTTAAATAAAAATAAACCCTGAAAAAAAA 762 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||