These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence [CCGCCGAAGAAATACACTTTATACGGTTGTAAAACCGATTTTATTGAACCGGGCAGAGTGTCTGCGTGTAGAGGAAAAGTTTAAGTACAGGTCGGTACAGAAATTCTCCACGCACAGGATGGGTATGAACGTGAGCCGCCAGGTGGACCTTACGGAGAATGAGTATCTGCAGCGATTCGTCGGCAAAACGCACGTCCCTGCTTACGATGACGATTTCTGGAACAATTTCCTGCAGTATCACATAAATCTACCCACAAACAGCGAAGAACAGCTAAGCCTCGATTCGCGGCTAGAAACGCTCTGCCAGAGCTTTATCAGCCACAATCTACACACCGGCAACTTTGGCTCGTTGATAAACGTCTTTCTGCTGAAGGTGTCTGAGCTGCTGACGCTATCCGACACCGAAAGCAACGTTCACATATGGCACGCGTTCAATGCACTGTTCATTATTCGCTGCCTGGTCAAGTACATGATCGAGACTGGGTCTGAGTATCAACTGCTGCAGCACTTTGAAGCGTTGCCGGTTCAAGCGGCCGATAGCGATGAGACACCGAGCGACGGAACGGCAGCAGGTACCAGCACGGCCATTCCGACCGACATGCGAACGGTGGAGGAAACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGCTCAAAGTTTGAAAC] [+] EMBL BM620400 [ CCGAAGAAATACACTTTATACGGTTGTAAAACCGATTTTATTGAACCGGGCAGAGTGTCTGCGTGTAGAGGAAAAGTTTAAGTACAGGTCGGTACAGAAATTCTCCACGCACAGGATGGGTATGAACGTGAGCCGCCAGGTGGACCTTACGGAGAATGAGTATCTGCAGCGATTCGTCGGCAAAACGCACGTCCCTGCTTACGATGACGATTTCTGGAACAATTTCCTGCAGTATCACATAAATCTACCCACAAACAGCGAAGAACAGCTAAGCCTCGATTCGCGGCTAGAAACGCTCTGCCAGAGCTTTATCAGCCACAATCTACACACCGGCAACTTTGGCTCGTTGATAAACGTCTTTCTGCTGAAGGTGTCTGAGCTGCTGACGCTATCCGACACCGAAAGCAACGTTCACATATGGCACGCGTTCAATGCACTGTTCATTATTCGCTGCCTGGTCAAGTACATGATCGAGACTGGGTCTGAGTATCAACTGCTGCAGCACTTTGAAGCGTTGCCGGTTCAAGCGGCCGATAGCGATGAGACACCGAGCGACGGAACGGCAGCAGGTACCAGCACGGCCATTCCGACCGACATGCGAACGGTGGAGGAAACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGCTCAAAGTTTGAAAC] [+] EMBL BM604815 [ccggaaAAGAAATACACTTTATACGGTTGTAAAACCGATTTTATTGAACCGGGCCGAGTGTCTGTGTGTAGAGGAAAAGTTTAAGTATAGGTCGGTACAGAAAATCTCTACGCACAGGATGGGTATGAACGTGAGCCGCCAGGTGGACCTCACGGAGAATGAGTATCTGCAGCGATTCGTCGGCAAAACGCACGTCCCTGCTTACGATGACGATTTCTGGAACAATTTCCTGCAGTATCACATAAATCTACCCACAAACAGCGAAGAACAGCTAAGCCTCGATTCGCGGCTGGAAACGCTCTGCCAGAGCTTTATCAGCCACAATCTACACACCGGCAACTTTGGCTCGTTGATAAACGTCTTTCTGCTGAAGGTGTCTGAGCTGCTGACGCTATCCGACACCGAAAGCAACGTTCACATATGGCACGCGTTCAATGCACTGTTCATTATTCGCTGCCTGGTCAAGTACATGATCGAGACTGGGTCTGAGTATCAACTGCTGCAGCACTTTGAAGCGTTGCCGGT ] consensusID : consensus_4904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 576 fasta sequence [TTTTTTTTAGTTTCCATACCAATCGGTTGCGGACTAACGTCGGAAGATATGTTGCAGCACGGCCATTCCGATCGACATGCGAGCGGTGGAGGAAACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGCTCAAAGTTTGAAACGTTTCTAGAGGCACTGGTTAACATTATCGTCGTGATACCGGTGAAAGAATTCACATATCACCTGCACCTGGAGGCGGTAAACTGCATGATTATACTGCTCTCGGTGAGCCTATTTTCCCAGCAAACGATGGAAAAGTCCACCATCTACCGGACGATCTATCGCTGCCAGCACGCAAACACGCTGATGAGTGCGCTGCTACATTTCCTCAGCCGCATGAGCCAAGCGCCGCAAACAATGTTTGGCTTCGGTACCGGCGGTTCGTTTGTGTTCGGCATTGCCGAATCGCTTTGGTCGATACTGACGTTCGCCCGCAAGCAGCCGGATATACTTACGGCACACGATCTTCCGACGGCCTTCAGGGAGCACTATCCGCTGGCGAACCAAAGCTTGCTGCTGATACTGATCCTTACCAACCGGCACGCAACCAAGGATAA] [+] EMBL AGA280310 [TTTTTTTTAGTTTCCATACCAATCGGTTGCGGACTAACGTCGGAAGATATGTTGCAGCACGGCCATTCCGATCGACATGCGAGCGGTGGAGGAAACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGCTCAAAGTTTGAAACGTTTCTAGAGGCACTGGTTAACATTATCGTCGTGATACCGGTGAAAGAATTCACATATCACCTGCACCTGGAGGCGGTAAACTGCATGATTATACTGCTCTCGGTGAGCCTATTTTCCCAGCAAACGATGGAAAAGTCCACCATCTACCGGACGATCTATCGCTGCCAGCACGCAAACACGCTGATGAGTGCGCTGCTACATTTCCTCAGCCGCATGAGCCAAGCGCCGCAAACAA ] [-] EMBL AGA282007 [ CTCTCGGTGAGCCTATTTTCCCAGCAAACGATGGAAAAGTCCACCATCTACCGGACGATCTATCGCTGCCAGCACGCAAACACGCTGATGAGTGCGCTGCTACATTTCCTCAGCCGCATGAGCCAAGCGCCGCAAACAATGTTTGGCTTCGGTACCGGCGGTTCGTTTGTGTTCGGCATTGCCGAATCGCTTTGGTCGATACTGACGTTCGCCCGCAAGCAGCCGGATATACTTACGGCACACGATCTTCCGACGGCCTTCAGGGAGCACTATCCGCTGGCGAACCAAAGCTTGCTGCTGATACTGATCCTTACCAACCGGCACGCAACCAAGGATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4904#0 CCGCCGAAGAAATACACTTTATACGGTTGTAAAACCGATT--TTATTGAACCGGGCAGAG 58 consensus_4904#1 ----------------TTTTTTTTAGTTTCCATACCAATCGGTTGCGGACTAACGTCGGA 44 *** * *** * *** ** ** ** * * consensus_4904#0 TGTCTGCGTGTAGAGGAAAAGTTTAAGTACAGGTCGGTACAGAAATTCTCCACGCACAGG 118 consensus_4904#1 AG---ATATGTTGCAGCACGGCC---ATTCCGATCGACATGCGAG----CGGTGGAGGAA 94 * *** * * * * * * * *** * * * * * consensus_4904#0 ATGGGTATGAACGTGAGCCGCCAGGTGGACCTTACGGAGAATGAG-TATCTGCAGCGATT 177 consensus_4904#1 ACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGCTCAAAGTTTGAAACGTTTCTAGAGG-- 152 * * * *** * *** *** * ** *** * * ** * consensus_4904#0 CGTCGGCAAAACGCACGTCCCTGCTTACGATGAC-GATTTCTGGAACAATTTCCTGCAGT 236 consensus_4904#1 CACTGGTTAACATTATCGTCGTGATACCGGTGAAAGAATTCACATATCACCTGCACCTGG 212 * ** ** * * ** * ** *** ** *** * * * * * * consensus_4904#0 ATCACATAAATCTACCCACAAACAGCGAAGAACAGCTAAGCCTCGATTCGCGGCTAGAAA 296 consensus_4904#1 AGGCGGTAAACTG---CATGATTATACTGCTCTCGGTGAGCCTATTTTCCCAGC---AAA 266 * **** ** * * * * ***** *** * ** *** consensus_4904#0 CGCTCTGCCAGAGCTTTATCAGCC--ACAATCTACACACCGGCA--ACTTTGGCTCGTTG 352 consensus_4904#1 CGATGGAAAAGTCCACCATCTACCGGACGATCTAT-CGCTGCCAGCACGCAAACACGCTG 325 ** * ** * *** ** ** ***** * * * ** ** * ** ** consensus_4904#0 ATAAACGTCTTTCTGCTGAAGGTGTCTGAGCTGCTGACGCTATCCGACACCGAAAGCAAC 412 consensus_4904#1 ATGAGTGCGCTGCTAC----ATTTCCTCAGCCGCATGAGCCA---AGCGCCGCAAACAAT 378 ** * * * ** * * ** *** ** ** * * *** ** *** consensus_4904#0 GTTCACATATGGCACGCGTTCAATGCACTGTTCATTATTCGCTGCCTGGTCAAGTACATG 472 consensus_4904#1 GTTTGGCTTCGGTACCGG--CGGTTCGTT-TGTGTTCGGCATTGCCGAATCGCTT---TG 432 *** * ** ** * * * * * * ** * **** ** * ** consensus_4904#0 ATCGAGACTGG-GTCTGAGTATCAACTGCTGCAGCACTTTGAAGCGTTGCCGGTTCAAGC 531 consensus_4904#1 GTCGATACTGACGTTCGCCCGCAAGCAGCCGGATATACTTACGGCACACGATCTTCCGAC 492 **** **** ** * * * ** * * ** ** *** * consensus_4904#0 GGCCGATAGCGATGAGACACCGAGCGACGGAACGGCAGCAGGTACCAGCACGG--CCATT 589 consensus_4904#1 GGCCTTCAGGGA-GCACTATCCGCTGGCGAACCAAAGCTTGCTGCTGATACTGATCCTTA 551 **** ** ** * * * * ** * * * * * ** * ** * consensus_4904#0 CCGACCGACATGCGAACGGTGGAGGAAACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGC 649 consensus_4904#1 CCAACCGGCACGC-AACCAAGGATAA---------------------------------- 576 ** **** ** ** *** *** * consensus_4904#0 TCAAAGTTTGAAAC 663 consensus_4904#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||