cluster # 4917

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Anopheles gambiae
cluster # 4917 cluster # 4917 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4917#0 length = 759 sequences # 3

consensus_4917#1 length = 337 sequences # 1

consensusID : consensus_4917#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 759
fasta sequence

                              [AATTTGGATGATGGCGCGACCATCTCGAACAAAGGAAAGGCCGTTGCGGCCGCTGGTCGTGTGGCGACGACCGGTGCTTCCCTTGCCGCACCGGACAAGAAGACGAAGGCTCGGGTGGAAGATGAGAATGGTCCGTGGAAAATGCTAATCACCGAAAACGTTGCCCTAACCCGGGCCGCCACTGCCGAGATCGGTGTGCCGCGCAAACAGCCGCCGGCAAGTGTCGAGGACTACGATCTTTGCTACTGGAACGATATCTACCAGGTGTCGGAGTACGCACAGGACATATTTGACTACCTGCAGGAGCGGGAGCCCGCGTACGACATTCCGGACTACATGGTGCGCCAGAAGCACTTGACGAAGCGGATGCGTGCCCTGCTGGTCGACTGGATGATTGAGATACAGGAGACGTTCGAGCTGAACCATGAAACGCTCTATCTGGCCGTTAAAATACTCGACACCTACCTGTCCCGTGTGACGATCGGCCACGAAGTCTTGCAGCTCGTGGGAATCGCGGGCATGCTGATCGCCTCGAAGTACGACGAACGTTTGCCCCCGACGGTCGATGACTTTGTTTACTTCTGCGACGGTGCGTACGATCGTAACGATTTGCTCAAGATGGAGCGCACCGTGTTCCGNACCATCGAATTTGATCTCGGCTTTCCACTGTCCTACCGTTTCCTGCGCCGGTACGCTCGCGTCAACCGCATTTCCGATGATGACGCTCACGCTGGCCCGCTACATTCTCGAGACGGGGCT]

[+] EMBL BX604201             [AATTTGGATGATGGCGCGACCATCTCGAACAAAGGAAAGGCCGTTGCGGCCGCTGGTCGTGTGGCGACGACCGGTGCTTCCCTTGCCGCACCGGACAAGAAGACGAAGGCTCGGGTGGAAGATGAGAATGGTCCGTGGAAAATGCTAATCACCGAAAACGTTGCCCTAACCCGGGCCGCCACTGCCGAGATCGGTGTGCCGCGCAAACAGCCGCCGGCAAGTGTCGAGGACTACGATCTTTGCTACTGGAACGATATCTACCAGGTGTCGGAGTACGCACAGGACATATTTGACTACCTGCAGGAGCGGGAGCCCGCGTACGACATTCCGGACTACATGGTGCGCCAGAAGCACTTGACGAAGCGGATGCGTGCCCTGCTGGTCGACTGGATGATTGAGATACAGGAGACGTTCGAGCTGAACCATGAAACGCTCTATCTGGCCGTTAAAATACTCGACACCTACCTGTCCCGTGTGACGATCGGCCACGAAGTCTTGCAGCTCGTGGGAATCGCGGGCATGCTGATCGCCTCGAAGTACGACGAACGTTTGCCCCCGACGGTCGATGACTTTGTTTACTTCTGCG                                                                                                                                                                             ]
[+] EMBL AGA280780            [                                                              GGCGACGACCGGTGCTTCCCTTGCCGCACCGGACAAGAAGACGAAGGCTCGGGTGGAAGATGAGAATGGTCCGTGGAAAATGCTAATCACCGAAAACGTTGCCCTAACCCGGGCCGCCACTGCCGAGATCGGTGTGCCGCGCAAACAGCCGCCGGCAAGTGTCGAGGACTACGATCTTTGCTACTGGAACGATATCTACCAGGTGTCGGAGTACGCACAGGACATATTTGACTACCTGCAGGAGCGGGAGCCCGCGTACGACATTCCGGACTACATGGTGCGCCAGAAGCACTTGACGAAGCGGATGCGTGCCCTGCTGGTCGACTGGATGATTGAGATACAGGAGACGTTCGAGCTGAACCATGAAACGCTCTATCTGGCCGTTAAAATACTCGACACCTACCTGTCC                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX624620             [                                                                                                                                                                                 GCCACTGCCGAGATCGGTGTGCCGCGCAAACAGCCGCCGGCAAGTGTCGAGGACTACGATCTTTGCTACTGGAACGATATCTACCAGGTGTCGGAGTACGCACAGGACATATTTGACTACCTGCAGGAGCGGGAGCCCGCGTACGACATTCCGGACTACATGGTGCGCCAGAAGCACTTGACGAAGCGGATGCGTGCCCTGCTGGTCGACTGGATGATTGAGATACAGGAGACGTTCGAGCTGAACCATGAAACGCTCTATCTGGCCGTTAAAATACTCGACACCTACCTGTCCCGTGTGACGATCGGCCACGAAGTCTTGCAGCTCGTGGGAATCGCGGGCATGCTGATCGCCTCGAAGTACGACGAACGTTTGCCCCCGACGGTCGATGACTTTGTTTACTTCTGCGACGGTGCGTACGATCGTAACGATTTGCTCAAGATGGAGCGCACCGTGTTCCGNACCATCGAATTTGATCTCGGCTTTCCACTGTCCTACCGTTTCCTGCGCCGGTACGCTCGCGTCAACCGCATTTCCGATGATGACGCTCACGCTGGCCCGCTACATTCTCGAGACGGGGCT]




>consensus_4917#0
AATTTGGATGATGGCGCGACCATCTCGAACAAAGGAAAGGCCGTTGCGGCCGCTGGTCGT
GTGGCGACGACCGGTGCTTCCCTTGCCGCACCGGACAAGAAGACGAAGGCTCGGGTGGAA
GATGAGAATGGTCCGTGGAAAATGCTAATCACCGAAAACGTTGCCCTAACCCGGGCCGCC
ACTGCCGAGATCGGTGTGCCGCGCAAACAGCCGCCGGCAAGTGTCGAGGACTACGATCTT
TGCTACTGGAACGATATCTACCAGGTGTCGGAGTACGCACAGGACATATTTGACTACCTG
CAGGAGCGGGAGCCCGCGTACGACATTCCGGACTACATGGTGCGCCAGAAGCACTTGACG
AAGCGGATGCGTGCCCTGCTGGTCGACTGGATGATTGAGATACAGGAGACGTTCGAGCTG
AACCATGAAACGCTCTATCTGGCCGTTAAAATACTCGACACCTACCTGTCCCGTGTGACG
ATCGGCCACGAAGTCTTGCAGCTCGTGGGAATCGCGGGCATGCTGATCGCCTCGAAGTAC
GACGAACGTTTGCCCCCGACGGTCGATGACTTTGTTTACTTCTGCGACGGTGCGTACGAT
CGTAACGATTTGCTCAAGATGGAGCGCACCGTGTTCCGNACCATCGAATTTGATCTCGGC
TTTCCACTGTCCTACCGTTTCCTGCGCCGGTACGCTCGCGTCAACCGCATTTCCGATGAT
GACGCTCACGCTGGCCCGCTACATTCTCGAGACGGGGCT

consensusID : consensus_4917#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [TCGAGGCAGAATCCCGCACGAGTGNAAATCGTAACGATTTGCTCAAGCATGGAGCGCACCGTGTTCCGTACCATCGAATTTGATCTCGGCTTTCCACTGATCCTACCGTTTCCTGCGCCNGTACGCTCGCGTTCAACCGCATTCCGACTCNATGACGCTCAGCGCGTGGCCCGGCTAGCAGTTCTCGGAGACGGGGCTGATGGATTACAAGCACGGTGCTGGTGCGCGATTCCAAGCTTGCCTGCGGTGCGCTCTTCATCGCTCGCCGTATGCTGGACCAGCCGGGATGGAACGAAACACTGGAATACTACTCAAGTTACAAGGTGGAGCAATTTAC]

[+] EMBL BX469089             [TCGAGGCAGAATCCCGCACGAGTGNAAATCGTAACGATTTGCTCAAGCATGGAGCGCACCGTGTTCCGTACCATCGAATTTGATCTCGGCTTTCCACTGATCCTACCGTTTCCTGCGCCNGTACGCTCGCGTTCAACCGCATTCCGACTCNATGACGCTCAGCGCGTGGCCCGGCTAGCAGTTCTCGGAGACGGGGCTGATGGATTACAAGCACGGTGCTGGTGCGCGATTCCAAGCTTGCCTGCGGTGCGCTCTTCATCGCTCGCCGTATGCTGGACCAGCCGGGATGGAACGAAACACTGGAATACTACTCAAGTTACAAGGTGGAGCAATTTAC]




>consensus_4917#1
TCGAGGCAGAATCCCGCACGAGTGNAAATCGTAACGATTTGCTCAAGCATGGAGCGCACC
GTGTTCCGTACCATCGAATTTGATCTCGGCTTTCCACTGATCCTACCGTTTCCTGCGCCN
GTACGCTCGCGTTCAACCGCATTCCGACTCNATGACGCTCAGCGCGTGGCCCGGCTAGCA
GTTCTCGGAGACGGGGCTGATGGATTACAAGCACGGTGCTGGTGCGCGATTCCAAGCTTG
CCTGCGGTGCGCTCTTCATCGCTCGCCGTATGCTGGACCAGCCGGGATGGAACGAAACAC
TGGAATACTACTCAAGTTACAAGGTGGAGCAATTTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4917#0      AATTTGGATGATGGCGCGACCATCTCGAACAAAGGAAAGGCCGTTGCGGCCGCTGGTCGT 60
consensus_4917#1      ------------------------------------------------------------
                                                                                  

consensus_4917#0      GTGGCGACGACCGGTGCTTCCCTTGCCGCACCGGACAAGAAGACGAAGGCTCGGGTGGAA 120
consensus_4917#1      ----------TCGAGGCAGA--ATCCCGCAC-GAGTGNAAATCGTAACGATTTGCTCAAG 47
                                 **  **      * ****** *      **    ** * *  * *  * 

consensus_4917#0      GATGAGAATGGTCCGTGGAAAATGCTAATCACCGAAAACGTTGCCCTAACCCGGGCC-GC 179
consensus_4917#1      CATG-GAGCGCACCGTGTTCCGTACCATCGAATTTGATCTCGGCTTTCCACTGATCCTAC 106
                       *** **  *  *****     * * *   *     * *   **  *   * *  **  *

consensus_4917#0      CACTGCCGAGATCGGTGTGCCGCGCAAACAGCCGCCGGCAAGTGTCGAGGACTACGATCT 239
consensus_4917#1      CGTTTCCTGCGCCNGTACGCT-CGCGTTCAACCGCATTCCGAC-TCNATGAC-----GCT 159
                      *  * **     * **  **  ***   ** ****   *     ** * ***      **

consensus_4917#0      TTGCTACTGGAACGATATCTACCAGGTGTCGGAGTACGCACAGGACATATTTGACTACCT 299
consensus_4917#1      CAGCGCGTGGCCCGG---CTAGCAGTTCTCGGAG-----ACGGGGC-TGATGGATTACAA 210
                        **   ***  **    *** *** * ******     ** ** * *  * ** ***  

consensus_4917#0      GCA-GGAGCGGGAGCCCGCGTACGACATTCCGGACTACATGGTGCGCCAGAAGCACTTGA 358
consensus_4917#1      GCACGGTGCTGGTGCGCGATTCCAAGCTT---GCCTGC--GGTGCGCTC----TTCATCG 261
                      *** ** ** ** ** **  * * *  **   * ** *  *******        * *  

consensus_4917#0      CGAAGCGGATGCGTGCCCTGCTGG--TCGACTGGATGATTGAGATACAGGAGACGTTCGA 416
consensus_4917#1      CTCGCCGTATGCTGGACCAGCCGGGATGGAACGAAACACTGGAATAC------TACTCAA 315
                      *    ** ****  * ** ** **  * **  * *  * **  ****         ** *

consensus_4917#0      GCTGAACCATGAAACGCTCTATCTGGCCGTTAAAATACTCGACACCTACCTGTCCCGTGT 476
consensus_4917#1      GTTACAAGGTGGAGCAATTTAC-------------------------------------- 337
                      * *  *   ** * *  * **                                       

consensus_4917#0      GACGATCGGCCACGAAGTCTTGCAGCTCGTGGGAATCGCGGGCATGCTGATCGCCTCGAA 536
consensus_4917#1      ------------------------------------------------------------
                                                                                  

consensus_4917#0      GTACGACGAACGTTTGCCCCCGACGGTCGATGACTTTGTTTACTTCTGCGACGGTGCGTA 596
consensus_4917#1      ------------------------------------------------------------
                                                                                  

consensus_4917#0      CGATCGTAACGATTTGCTCAAGATGGAGCGCACCGTGTTCCGNACCATCGAATTTGATCT 656
consensus_4917#1      ------------------------------------------------------------
                                                                                  

consensus_4917#0      CGGCTTTCCACTGTCCTACCGTTTCCTGCGCCGGTACGCTCGCGTCAACCGCATTTCCGA 716
consensus_4917#1      ------------------------------------------------------------
                                                                                  

consensus_4917#0      TGATGACGCTCACGCTGGCCCGCTACATTCTCGAGACGGGGCT 759
consensus_4917#1      -------------------------------------------