These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 591 fasta sequence [TTTTTTTTCATGCTCATAAGACCTCTTATCATTCTCTTTATTAAACTATCAGCCGGATACCTTTTATCCCGCGAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAGCAAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTC------CTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCATTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAGGTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTATGCTGTGTCTCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTAGTGTGAGCATCAAACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATAA] [+] EMBL AGA284463 [TTTTTTTTCATGCTCATAAGACCTCTTATCATTCTCTTTATTAAACTATCAGCCGGATACCTTTTATCCCGCGAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAGCAAACTGCTGCATTCTTTCGCTTTCCTCAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTATCCTGCTGCTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACGTCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCATTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGGAGTTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATA ] [+] EMBL AGA282470 [ AGAGCGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTC CTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCATTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAGGTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTATGCTGTGTCTCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTAGTGTGAGCATCAAACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATA ] [-] EMBL AGA280837 [ TCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTC CTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCATTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAGGTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTATGCTGTGTCTCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTAGTGTGAGCATCAAACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATAA] consensusID : consensus_4921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [TAAGACCTCTTATCATTCTCTTTATTAAACTATCGGCCGGATACCTTGTTATCCCGCAAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAGCGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTTAACCTNACGTTCCCCAGCGTGNTAATATCCATTTTNAACCTGTTGAGAANTTACTTTAAAGGGAAANNAGTNGGCCGCNAAAACCCACGGTNNAGGNNNNGTTNGTTAANGAAAGCCATTATTTGCTACCGGTNANNNAACGAAACCCAATTACTCCTTTTNNCCTTCTCCCTTATGCCTGTTGTTCTTCCCAAATTGCCCAGTGGGNATTTCATTTTCCCTTTT] [+] EMBL BX619934 [TAAGACCTCTTATCATTCTCTTTATTAAACTATCGGCCGGATACCTTGTTATCCCGCAAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAGCGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTTAACCTNACGTTCCCCAGCGTGNTAATATCCATTTTNAACCTGTTGAGAANTTACTTTAAAGGGAAANNAGTNGGCCGCNAAAACCCACGGTNNAGGNNNNGTTNGTTAANGAAAGCCATTATTTGCTACCGGTNANNNAACGAAACCCAATTACTCCTTTTNNCCTTCTCCCTTATGCCTGTTGTTCTTCCCAAATTGCCCAGTGGGNATTTCATTTTCCCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4921#0 TTTTTTTTCATGCTCATAAGACCTCTTATCATTCTCTTTATTAAACTATCAGCCGGATAC 60 consensus_4921#1 ----------------TAAGACCTCTTATCATTCTCTTTATTAAACTATCGGCCGGATAC 44 ********************************** ********* consensus_4921#0 CTT-TTATCCCGCGAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCT 119 consensus_4921#1 CTTGTTATCCCGCAAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCT 104 *** ********* ********************************************** consensus_4921#0 AGCACGATAGGGAGAGCAAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTA 179 consensus_4921#1 AGCACGATAGGGAGAGCGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTA 164 ***************** ****************************************** consensus_4921#0 TAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATAT 239 consensus_4921#1 TAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATAT 224 ************************************************************ consensus_4921#0 TTACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAG 299 consensus_4921#1 TTACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAG 284 ************************************************************ consensus_4921#0 GACACGGGCGGGCACGTACATCGGTACGTCCTTTTAA---CTACGTTCCC-AGCGTGT-A 354 consensus_4921#1 GACACGGGCGGGCACGTACATCGGTACGTCCTTTTTAACCTNACGTTCCCCAGCGTGNTA 344 *********************************** * ******** ****** * consensus_4921#0 ATATC-ATTTTAACTGTGA-GAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAG 412 consensus_4921#1 ATATCCATTTTNAACCTGTTGAGAANTTACTTTAAAGGGAAANNAGTNGGCCGCNAAAAC 404 ***** ***** * ** ** * *** *** * * ** * ** consensus_4921#0 GTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTAT 472 consensus_4921#1 CCACGGTNNAGGNNNNGTTN-----GTTAANGAAAGCCATTATT-TGCTACCGGTNANNN 458 * * ** ** * * *** ** * * *** * consensus_4921#0 GCTGTGTCTCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTA 532 consensus_4921#1 AACGAAAC-CCAATTACTCCT----TTTNNCCTTCTCCCTTATGCCTGTTGTTCTTCCCA 513 * * ****** * * * * * * * ** * * * ** ** * consensus_4921#0 GTGTGAGCATCA--AACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATA 590 consensus_4921#1 AATTGCCCAGTGGGNATTTCATTTTCCCTTTT---------------------------- 545 ** ** * * * * * ** * consensus_4921#0 A 591 consensus_4921#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||