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Anopheles gambiae
cluster # 4921 cluster # 4921       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4921#0 length = 591 sequences # 3  
consensus_4921#1 length = 545 sequences # 1  

consensusID : consensus_4921#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 591
fasta sequence
                              [TTTTTTTTCATGCTCATAAGACCTCTTATCATTCTCTTTATTAAACTATCAGCCGGATACCTTTTATCCCGCGAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAGCAAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTC------CTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCATTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAGGTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTATGCTGTGTCTCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTAGTGTGAGCATCAAACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATAA]

[+] EMBL AGA284463            [TTTTTTTTCATGCTCATAAGACCTCTTATCATTCTCTTTATTAAACTATCAGCCGGATACCTTTTATCCCGCGAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAGCAAACTGCTGCATTCTTTCGCTTTCCTCAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTATCCTGCTGCTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACGTCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCATTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGGAGTTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATA                                                                                                                                         ]
[+] EMBL AGA282470            [                                                                                                                                   AGAGCGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTC      CTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCATTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAGGTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTATGCTGTGTCTCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTAGTGTGAGCATCAAACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATA ]
[-] EMBL AGA280837            [                                                                                                                                                    TCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTC      CTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCATTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAGGTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTATGCTGTGTCTCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTAGTGTGAGCATCAAACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATAA]


>consensus_4921#0 TTTTTTTTCATGCTCATAAGACCTCTTATCATTCTCTTTATTAAACTATCAGCCGGATAC CTTTTATCCCGCGAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTA GCACGATAGGGAGAGCAAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTAT AATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATT TACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAGG ACACGGGCGGGCACGTACATCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCA TTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAGGTTGTAAG GAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTATGCTGTGTC TCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTAGTGTGAGC ATCAAACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATAA



consensusID : consensus_4921#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence
                              [TAAGACCTCTTATCATTCTCTTTATTAAACTATCGGCCGGATACCTTGTTATCCCGCAAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAGCGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTTAACCTNACGTTCCCCAGCGTGNTAATATCCATTTTNAACCTGTTGAGAANTTACTTTAAAGGGAAANNAGTNGGCCGCNAAAACCCACGGTNNAGGNNNNGTTNGTTAANGAAAGCCATTATTTGCTACCGGTNANNNAACGAAACCCAATTACTCCTTTTNNCCTTCTCCCTTATGCCTGTTGTTCTTCCCAAATTGCCCAGTGGGNATTTCATTTTCCCTTTT]

[+] EMBL BX619934             [TAAGACCTCTTATCATTCTCTTTATTAAACTATCGGCCGGATACCTTGTTATCCCGCAAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAGCGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTTAACCTNACGTTCCCCAGCGTGNTAATATCCATTTTNAACCTGTTGAGAANTTACTTTAAAGGGAAANNAGTNGGCCGCNAAAACCCACGGTNNAGGNNNNGTTNGTTAANGAAAGCCATTATTTGCTACCGGTNANNNAACGAAACCCAATTACTCCTTTTNNCCTTCTCCCTTATGCCTGTTGTTCTTCCCAAATTGCCCAGTGGGNATTTCATTTTCCCTTTT]


>consensus_4921#1 TAAGACCTCTTATCATTCTCTTTATTAAACTATCGGCCGGATACCTTGTTATCCCGCAAG AGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAG CGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAG CCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGT GGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACG TACATCGGTACGTCCTTTTTAACCTNACGTTCCCCAGCGTGNTAATATCCATTTTNAACC TGTTGAGAANTTACTTTAAAGGGAAANNAGTNGGCCGCNAAAACCCACGGTNNAGGNNNN GTTNGTTAANGAAAGCCATTATTTGCTACCGGTNANNNAACGAAACCCAATTACTCCTTT TNNCCTTCTCCCTTATGCCTGTTGTTCTTCCCAAATTGCCCAGTGGGNATTTCATTTTCC CTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4921#0      TTTTTTTTCATGCTCATAAGACCTCTTATCATTCTCTTTATTAAACTATCAGCCGGATAC 60
consensus_4921#1      ----------------TAAGACCTCTTATCATTCTCTTTATTAAACTATCGGCCGGATAC 44
                                      ********************************** *********

consensus_4921#0      CTT-TTATCCCGCGAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCT 119
consensus_4921#1      CTTGTTATCCCGCAAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCT 104
                      *** ********* **********************************************

consensus_4921#0      AGCACGATAGGGAGAGCAAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTA 179
consensus_4921#1      AGCACGATAGGGAGAGCGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTA 164
                      ***************** ******************************************

consensus_4921#0      TAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATAT 239
consensus_4921#1      TAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATAT 224
                      ************************************************************

consensus_4921#0      TTACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAG 299
consensus_4921#1      TTACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAG 284
                      ************************************************************

consensus_4921#0      GACACGGGCGGGCACGTACATCGGTACGTCCTTTTAA---CTACGTTCCC-AGCGTGT-A 354
consensus_4921#1      GACACGGGCGGGCACGTACATCGGTACGTCCTTTTTAACCTNACGTTCCCCAGCGTGNTA 344
                      *********************************** *     ******** ******  *

consensus_4921#0      ATATC-ATTTTAACTGTGA-GAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAG 412
consensus_4921#1      ATATCCATTTTNAACCTGTTGAGAANTTACTTTAAAGGGAAANNAGTNGGCCGCNAAAAC 404
                      ***** ***** *   **  **  * ***    *** *      *      **  * ** 

consensus_4921#0      GTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTAT 472
consensus_4921#1      CCACGGTNNAGGNNNNGTTN-----GTTAANGAAAGCCATTATT-TGCTACCGGTNANNN 458
                               * *     **      **  *    * *** ** * *  ***   *     

consensus_4921#0      GCTGTGTCTCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTA 532
consensus_4921#1      AACGAAAC-CCAATTACTCCT----TTTNNCCTTCTCCCTTATGCCTGTTGTTCTTCCCA 513
                         *   * ****** *   *    *     * * * * ** *   *  * **   ** *

consensus_4921#0      GTGTGAGCATCA--AACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATA 590
consensus_4921#1      AATTGCCCAGTGGGNATTTCATTTTCCCTTTT---------------------------- 545
                         **  **      * * *   * * **  *                            

consensus_4921#0      A 591
consensus_4921#1      -
                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)