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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 591 fasta sequence
[TTTTTTTTCATGCTCATAAGACCTCTTATCATTCTCTTTATTAAACTATCAGCCGGATACCTTTTATCCCGCGAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAGCAAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTC------CTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCATTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAGGTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTATGCTGTGTCTCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTAGTGTGAGCATCAAACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATAA]
[+] EMBL AGA284463 [TTTTTTTTCATGCTCATAAGACCTCTTATCATTCTCTTTATTAAACTATCAGCCGGATACCTTTTATCCCGCGAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAGCAAACTGCTGCATTCTTTCGCTTTCCTCAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTATCCTGCTGCTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACGTCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCATTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGGAGTTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATA ]
[+] EMBL AGA282470 [ AGAGCGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTC CTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCATTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAGGTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTATGCTGTGTCTCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTAGTGTGAGCATCAAACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATA ]
[-] EMBL AGA280837 [ TCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTC CTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTAACTACGTTCCCAGCGTGTAATATCATTTTAACTGTGAGAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAGGTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTATGCTGTGTCTCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTAGTGTGAGCATCAAACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATAA]
consensusID : consensus_4921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence
[TAAGACCTCTTATCATTCTCTTTATTAAACTATCGGCCGGATACCTTGTTATCCCGCAAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAGCGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTTAACCTNACGTTCCCCAGCGTGNTAATATCCATTTTNAACCTGTTGAGAANTTACTTTAAAGGGAAANNAGTNGGCCGCNAAAACCCACGGTNNAGGNNNNGTTNGTTAANGAAAGCCATTATTTGCTACCGGTNANNNAACGAAACCCAATTACTCCTTTTNNCCTTCTCCCTTATGCCTGTTGTTCTTCCCAAATTGCCCAGTGGGNATTTCATTTTCCCTTTT]
[+] EMBL BX619934 [TAAGACCTCTTATCATTCTCTTTATTAAACTATCGGCCGGATACCTTGTTATCCCGCAAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCTAGCACGATAGGGAGAGCGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTATAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATATTTACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAGGACACGGGCGGGCACGTACATCGGTACGTCCTTTTTAACCTNACGTTCCCCAGCGTGNTAATATCCATTTTNAACCTGTTGAGAANTTACTTTAAAGGGAAANNAGTNGGCCGCNAAAACCCACGGTNNAGGNNNNGTTNGTTAANGAAAGCCATTATTTGCTACCGGTNANNNAACGAAACCCAATTACTCCTTTTNNCCTTCTCCCTTATGCCTGTTGTTCTTCCCAAATTGCCCAGTGGGNATTTCATTTTCCCTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4921#0 TTTTTTTTCATGCTCATAAGACCTCTTATCATTCTCTTTATTAAACTATCAGCCGGATAC 60
consensus_4921#1 ----------------TAAGACCTCTTATCATTCTCTTTATTAAACTATCGGCCGGATAC 44
********************************** *********
consensus_4921#0 CTT-TTATCCCGCGAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCT 119
consensus_4921#1 CTTGTTATCCCGCAAGAGTGTGTGTTTTTGTTTTCCTATCAAGTTCTAACCGACTGTTCT 104
*** ********* **********************************************
consensus_4921#0 AGCACGATAGGGAGAGCAAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTA 179
consensus_4921#1 AGCACGATAGGGAGAGCGAACTGCTGCATTCTTTCGCTTTCCTTAAAAACGCAAGCCTTA 164
***************** ******************************************
consensus_4921#0 TAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATAT 239
consensus_4921#1 TAATGCGTTCGTTTAGCCTTGTTTTGTTTTTGCCTAATCAAACTGTGTTTTGCACTATAT 224
************************************************************
consensus_4921#0 TTACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAG 299
consensus_4921#1 TTACAGTGGAAAAAGTGGCTAATAGTGTCCTGCTGCCTGTTGTTATTGAGGATAAGTAAG 284
************************************************************
consensus_4921#0 GACACGGGCGGGCACGTACATCGGTACGTCCTTTTAA---CTACGTTCCC-AGCGTGT-A 354
consensus_4921#1 GACACGGGCGGGCACGTACATCGGTACGTCCTTTTTAACCTNACGTTCCCCAGCGTGNTA 344
*********************************** * ******** ****** *
consensus_4921#0 ATATC-ATTTTAACTGTGA-GAATACTTAAGGAAAAAGTGGCGCAAAACCACGTGAGAAG 412
consensus_4921#1 ATATCCATTTTNAACCTGTTGAGAANTTACTTTAAAGGGAAANNAGTNGGCCGCNAAAAC 404
***** ***** * ** ** * *** *** * * ** * **
consensus_4921#0 GTTGTAAGGAAGCCATATTGCTACGGTAGAAACGAACCAATACTCTTTTACTTCTCCTAT 472
consensus_4921#1 CCACGGTNNAGGNNNNGTTN-----GTTAANGAAAGCCATTATT-TGCTACCGGTNANNN 458
* * ** ** * * *** ** * * *** *
consensus_4921#0 GCTGTGTCTCCAATTGCCAGTGGATTCATTTCCTTTTCATTTTAAATAATATTTCACCTA 532
consensus_4921#1 AACGAAAC-CCAATTACTCCT----TTTNNCCTTCTCCCTTATGCCTGTTGTTCTTCCCA 513
* * ****** * * * * * * * ** * * * ** ** *
consensus_4921#0 GTGTGAGCATCA--AACTACTGCTCCACTGCTAGTCTGGGACATAAGGGTACTTTAAATA 590
consensus_4921#1 AATTGCCCAGTGGGNATTTCATTTTCCCTTTT---------------------------- 545
** ** * * * * * ** *
consensus_4921#0 A 591
consensus_4921#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||