cluster # 4933

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Anopheles gambiae
cluster # 4933 cluster # 4933 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4933#0 length = 543 sequences # 2

consensus_4933#1 length = 497 sequences # 1
consensus_4933#2 length = 344 sequences # 1

consensusID : consensus_4933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 543
fasta sequence

                              [CCGCGGAATCTGTTTGTTTGTTTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGCGC----AAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAAG-GCACACACACACAGCGACTAGGGCCCTAAACGAACTGATATTCCGATAACGTAAAAGTGGGTAGGGGGGGGGGGGGCAAACAATTTTGGGTGATTGAAATCAATGTGGCGATGTGTGCAGTAGTGAGCAAAGTTAGTGAGCCGCATGGCATGGCAGCAAACTTTGAAACCCTTCCGCAAGAAAAAAGAAACAATTAATTAACGAATGGCAGACATAGAAATTACCGCAAAAAAAAACAAGACTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGAGATGATAAAACTTATGGCAAAATTCATTACTATCATTACG]

[+] EMBL BM635210             [CCGCGGAATCTGTTTGTTTGTTTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGCGC    AAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAAG GCACACACACACAGCGACTAGGGCCCTAAACGAACTGATATTCCGATAACGTAAAAGTGGGTAGGGGGGGGGGGGGCAAACAATTTTGGGTGATTGAAATCAATGTGGCGATGTGTGCAGTAGTGAGCAAAGTTAGTGAGCCGCATGGCATGGCAGCAAACTTTGAAACCCTTCCGCAAGAAAAAAGAAACAATTAATTAACGAATGGCAGACATAGAAATTACCGCAAAAAAAAACAAGACTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGAGATGATAAAACTTATGGCAAAATTCATTACTATCATTACG]
[+] EMBL AGA281082            [                     TTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGCGCAAAAAAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACAGCGACTAGGGCCCT AACGAACTGATATTCCGATAACGATAAAGTGGGTA      GGGGGGGCAAACAATTTTGGGTGATTGAAATCCATGTGGCGATGCGTGCAGTAATGAGCAGAGTTAGTGAGCC                                                                                                                                                                                                                                                ]




>consensus_4933#0
CCGCGGAATCTGTTTGTTTGTTTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGC
GCAAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTT
CATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAAGGCACACACACACAGCGACT
AGGGCCCTAAACGAACTGATATTCCGATAACGTAAAAGTGGGTAGGGGGGGGGGGGGCAA
ACAATTTTGGGTGATTGAAATCAATGTGGCGATGTGTGCAGTAGTGAGCAAAGTTAGTGA
GCCGCATGGCATGGCAGCAAACTTTGAAACCCTTCCGCAAGAAAAAAGAAACAATTAATT
AACGAATGGCAGACATAGAAATTACCGCAAAAAAAAACAAGACTTCACTTACAGCAAATA
AAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACA
CAGTAAAGTCACATAAATGCAGAGATGATAAAACTTATGGCAAAATTCATTACTATCATT
ACG

consensusID : consensus_4933#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGTTGATAAAACTTATGGCAAAATTCATTACTATCATTACGATAAAAAGAAATGAAGAAAACAACATTAAACTACGGCCGCCACTATACTCTCACCAAAATCAAACTAATCGTATGACAAAGTAACACACATTAGCAGCAGGCGGGCGCACGACAACTTGTACCGAGAAGAGGAGGTGTACCGGTGCAAAGGGCAGCAACGGTCAT]

[+] EMBL BM585345             [CCGCCCACGCGTCCGCCCACGCGTCCGAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGTTGATAAAACTTATGGCAAAATTCATTACTATCATTACGATAAAAAGAAATGAAGAAAACAACATTAAACTACGGCCGCCACTATACTCTCACCAAAATCAAACTAATCGTATGACAAAGTAACACACATTAGCAGCAGGCGGGCGCACGACAACTTGTACCGAGAAGAGGAGGTGTACCGGTGCAAAGGGCAGCAACGGTCAT]




>consensus_4933#1
CCGCCCACGCGTCCGCCCACGCGTCCGAATTTTGGGTGATTGAAATCGATGTGGCGATGC
GTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTG
AACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCG
CAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAG
CTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGTTGATAA
AACTTATGGCAAAATTCATTACTATCATTACGATAAAAAGAAATGAAGAAAACAACATTA
AACTACGGCCGCCACTATACTCTCACCAAAATCAAACTAATCGTATGACAAAGTAACACA
CATTAGCAGCAGGCGGGCGCACGACAACTTGTACCGAGAAGAGGAGGTGTACCGGTGCAA
AGGGCAGCAACGGTCAT

consensusID : consensus_4933#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [AGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACAGCGACTAGGGCCCTAACGAACTGATATTCCGATAACGATAAAGTGGGTAGGGGGGGCAAACAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCAT]

[-] EMBL AGA282710            [AGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACAGCGACTAGGGCCCTAACGAACTGATATTCCGATAACGATAAAGTGGGTAGGGGGGGCAAACAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCAT]




>consensus_4933#2
AGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACA
GCGACTAGGGCCCTAACGAACTGATATTCCGATAACGATAAAGTGGGTAGGGGGGGCAAA
CAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAG
CCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACA
AGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGC
AAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4933#0      CCGCGGAATCTGTTTGTTTGTTTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGC 60
consensus_4933#2      ------------------------------------------------------------
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      GCAAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTT 120
consensus_4933#2      -------------------------------------------------------AGCTT 5
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      CATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAAG-GCACACACACACAGCGAC 179
consensus_4933#2      CATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACAGCGAC 65
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      TAGGGCCCTAAACGAACTGATATTCCGATAACGTAAAAGTGGGTAGGGGGGGGGGGGGCA 239
consensus_4933#2      TAGGGCCCTAA-CGAACTGATATTCCGATAACGATAAAGTGGGTAGGGGGGG------CA 118
consensus_4933#1      ------------------------CCGCCCACGCGTCCGCCCACGCGTCCG--------- 27
                                              ***   ***     *       *   *         

consensus_4933#0      AACAATTTTGGGTGATTGAAATCAATGTGGCGATGTGTGCAGTAGTGAGCAAAGTTAGTG 299
consensus_4933#2      AACAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTG 178
consensus_4933#1      ---AATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTG 84
                         ******************** *********** *************** ********

consensus_4933#0      AGCCGC-ATGG--------CATGGCAGCAAACTTTGAAACCCTTCCGCAAGAAAAAAGAA 350
consensus_4933#2      AGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAA-GAA 237
consensus_4933#1      AGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAA-GAA 143
                      ****** **          ******************* ******** ******** ***

consensus_4933#0      ACAATTAATTAACGAATGGCAGACATAGAAATTACCGCAAAAAAAAACAAGACTTCACTT 410
consensus_4933#2      ACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAA--ACAAGAGTTCACTT 295
consensus_4933#1      ACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAA--ACAAGAGTTCACTT 201
                      **** ********************** ****************  ****** *******

consensus_4933#0      ACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCA 470
consensus_4933#2      ACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCAT----------- 344
consensus_4933#1      ACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCA 261
                      *************************************************           

consensus_4933#0      AGGAGCTACACAGTAAAGTCACATAAATGCAGAGATGATAAAACTTATGGCAAAATTCAT 530
consensus_4933#2      ------------------------------------------------------------
consensus_4933#1      AGGAGCTACACAGTAAAGTCACATAAATGCAGT--TGATAAAACTTATGGCAAAATTCAT 319
                                                                                  

consensus_4933#0      TACTATCATTACG----------------------------------------------- 543
consensus_4933#2      ------------------------------------------------------------
consensus_4933#1      TACTATCATTACGATAAAAAGAAATGAAGAAAACAACATTAAACTACGGCCGCCACTATA 379
                                                                                  

consensus_4933#0      ------------------------------------------------------------
consensus_4933#2      ------------------------------------------------------------
consensus_4933#1      CTCTCACCAAAATCAAACTAATCGTATGACAAAGTAACACACATTAGCAGCAGGCGGGCG 439
                                                                                  

consensus_4933#0      ----------------------------------------------------------
consensus_4933#2      ----------------------------------------------------------
consensus_4933#1      CACGACAACTTGTACCGAGAAGAGGAGGTGTACCGGTGCAAAGGGCAGCAACGGTCAT 497