Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4933 cluster # 4933       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4933#0 length = 543 sequences # 2  
consensus_4933#1 length = 497 sequences # 1  
consensus_4933#2 length = 344 sequences # 1  

consensusID : consensus_4933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 543
fasta sequence
                              [CCGCGGAATCTGTTTGTTTGTTTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGCGC----AAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAAG-GCACACACACACAGCGACTAGGGCCCTAAACGAACTGATATTCCGATAACGTAAAAGTGGGTAGGGGGGGGGGGGGCAAACAATTTTGGGTGATTGAAATCAATGTGGCGATGTGTGCAGTAGTGAGCAAAGTTAGTGAGCCGCATGGCATGGCAGCAAACTTTGAAACCCTTCCGCAAGAAAAAAGAAACAATTAATTAACGAATGGCAGACATAGAAATTACCGCAAAAAAAAACAAGACTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGAGATGATAAAACTTATGGCAAAATTCATTACTATCATTACG]

[+] EMBL BM635210             [CCGCGGAATCTGTTTGTTTGTTTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGCGC    AAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAAG GCACACACACACAGCGACTAGGGCCCTAAACGAACTGATATTCCGATAACGTAAAAGTGGGTAGGGGGGGGGGGGGCAAACAATTTTGGGTGATTGAAATCAATGTGGCGATGTGTGCAGTAGTGAGCAAAGTTAGTGAGCCGCATGGCATGGCAGCAAACTTTGAAACCCTTCCGCAAGAAAAAAGAAACAATTAATTAACGAATGGCAGACATAGAAATTACCGCAAAAAAAAACAAGACTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGAGATGATAAAACTTATGGCAAAATTCATTACTATCATTACG]
[+] EMBL AGA281082            [                     TTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGCGCAAAAAAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACAGCGACTAGGGCCCT AACGAACTGATATTCCGATAACGATAAAGTGGGTA      GGGGGGGCAAACAATTTTGGGTGATTGAAATCCATGTGGCGATGCGTGCAGTAATGAGCAGAGTTAGTGAGCC                                                                                                                                                                                                                                                ]


>consensus_4933#0 CCGCGGAATCTGTTTGTTTGTTTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGC GCAAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTT CATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAAGGCACACACACACAGCGACT AGGGCCCTAAACGAACTGATATTCCGATAACGTAAAAGTGGGTAGGGGGGGGGGGGGCAA ACAATTTTGGGTGATTGAAATCAATGTGGCGATGTGTGCAGTAGTGAGCAAAGTTAGTGA GCCGCATGGCATGGCAGCAAACTTTGAAACCCTTCCGCAAGAAAAAAGAAACAATTAATT AACGAATGGCAGACATAGAAATTACCGCAAAAAAAAACAAGACTTCACTTACAGCAAATA AAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACA CAGTAAAGTCACATAAATGCAGAGATGATAAAACTTATGGCAAAATTCATTACTATCATT ACG



consensusID : consensus_4933#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGTTGATAAAACTTATGGCAAAATTCATTACTATCATTACGATAAAAAGAAATGAAGAAAACAACATTAAACTACGGCCGCCACTATACTCTCACCAAAATCAAACTAATCGTATGACAAAGTAACACACATTAGCAGCAGGCGGGCGCACGACAACTTGTACCGAGAAGAGGAGGTGTACCGGTGCAAAGGGCAGCAACGGTCAT]

[+] EMBL BM585345             [CCGCCCACGCGTCCGCCCACGCGTCCGAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGTTGATAAAACTTATGGCAAAATTCATTACTATCATTACGATAAAAAGAAATGAAGAAAACAACATTAAACTACGGCCGCCACTATACTCTCACCAAAATCAAACTAATCGTATGACAAAGTAACACACATTAGCAGCAGGCGGGCGCACGACAACTTGTACCGAGAAGAGGAGGTGTACCGGTGCAAAGGGCAGCAACGGTCAT]


>consensus_4933#1 CCGCCCACGCGTCCGCCCACGCGTCCGAATTTTGGGTGATTGAAATCGATGTGGCGATGC GTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTG AACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCG CAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAG CTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGTTGATAA AACTTATGGCAAAATTCATTACTATCATTACGATAAAAAGAAATGAAGAAAACAACATTA AACTACGGCCGCCACTATACTCTCACCAAAATCAAACTAATCGTATGACAAAGTAACACA CATTAGCAGCAGGCGGGCGCACGACAACTTGTACCGAGAAGAGGAGGTGTACCGGTGCAA AGGGCAGCAACGGTCAT



consensusID : consensus_4933#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence
                              [AGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACAGCGACTAGGGCCCTAACGAACTGATATTCCGATAACGATAAAGTGGGTAGGGGGGGCAAACAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCAT]

[-] EMBL AGA282710            [AGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACAGCGACTAGGGCCCTAACGAACTGATATTCCGATAACGATAAAGTGGGTAGGGGGGGCAAACAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCAT]


>consensus_4933#2 AGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACA GCGACTAGGGCCCTAACGAACTGATATTCCGATAACGATAAAGTGGGTAGGGGGGGCAAA CAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAG CCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACA AGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGC AAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4933#0      CCGCGGAATCTGTTTGTTTGTTTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGC 60
consensus_4933#2      ------------------------------------------------------------
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      GCAAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTT 120
consensus_4933#2      -------------------------------------------------------AGCTT 5
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      CATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAAG-GCACACACACACAGCGAC 179
consensus_4933#2      CATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACAGCGAC 65
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      TAGGGCCCTAAACGAACTGATATTCCGATAACGTAAAAGTGGGTAGGGGGGGGGGGGGCA 239
consensus_4933#2      TAGGGCCCTAA-CGAACTGATATTCCGATAACGATAAAGTGGGTAGGGGGGG------CA 118
consensus_4933#1      ------------------------CCGCCCACGCGTCCGCCCACGCGTCCG--------- 27
                                              ***   ***     *       *   *         

consensus_4933#0      AACAATTTTGGGTGATTGAAATCAATGTGGCGATGTGTGCAGTAGTGAGCAAAGTTAGTG 299
consensus_4933#2      AACAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTG 178
consensus_4933#1      ---AATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTG 84
                         ******************** *********** *************** ********

consensus_4933#0      AGCCGC-ATGG--------CATGGCAGCAAACTTTGAAACCCTTCCGCAAGAAAAAAGAA 350
consensus_4933#2      AGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAA-GAA 237
consensus_4933#1      AGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAA-GAA 143
                      ****** **          ******************* ******** ******** ***

consensus_4933#0      ACAATTAATTAACGAATGGCAGACATAGAAATTACCGCAAAAAAAAACAAGACTTCACTT 410
consensus_4933#2      ACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAA--ACAAGAGTTCACTT 295
consensus_4933#1      ACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAA--ACAAGAGTTCACTT 201
                      **** ********************** ****************  ****** *******

consensus_4933#0      ACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCA 470
consensus_4933#2      ACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCAT----------- 344
consensus_4933#1      ACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCA 261
                      *************************************************           

consensus_4933#0      AGGAGCTACACAGTAAAGTCACATAAATGCAGAGATGATAAAACTTATGGCAAAATTCAT 530
consensus_4933#2      ------------------------------------------------------------
consensus_4933#1      AGGAGCTACACAGTAAAGTCACATAAATGCAGT--TGATAAAACTTATGGCAAAATTCAT 319
                                                                                  

consensus_4933#0      TACTATCATTACG----------------------------------------------- 543
consensus_4933#2      ------------------------------------------------------------
consensus_4933#1      TACTATCATTACGATAAAAAGAAATGAAGAAAACAACATTAAACTACGGCCGCCACTATA 379
                                                                                  

consensus_4933#0      ------------------------------------------------------------
consensus_4933#2      ------------------------------------------------------------
consensus_4933#1      CTCTCACCAAAATCAAACTAATCGTATGACAAAGTAACACACATTAGCAGCAGGCGGGCG 439
                                                                                  

consensus_4933#0      ----------------------------------------------------------
consensus_4933#2      ----------------------------------------------------------
consensus_4933#1      CACGACAACTTGTACCGAGAAGAGGAGGTGTACCGGTGCAAAGGGCAGCAACGGTCAT 497
                                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)