These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4939#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 892 fasta sequence [GCAGAATCGCCACGAGGCTATACTTTAACCTTGCCCTTCATCTGCTCCGCAAGTATGGCCACTCCTTTA-CAGGAAAGCTAGCCCTTGTGACCGGTGCCGGTTCTGGAATTGGCCGTGCGACAACCAAACTGTTGGCACGCGATGGAGCGATCGTTGTAGCGGTCGATCGTAACGTACAGGCGGCCCAGGAAACGATCGCATCGCTCACGGCGGGCGACAATGCGGCCTACGAGATGGACGTCTCGTCCGGCGACAGTGTTGATGCCGTGCTGAAGGAAGTGATTGGCCGGTACAAGCGCCCACCGACAGTGGTCGTTAATTCGGCCGGTATTACCCGCGATAACTTCCTGCTGAAGATGCCCGAGTCCGACTTTGATGCGGTGATCAACGTGAACCTGAAGGGTACGTGGTTGGTGCTGCAACGTTTCGGCCGGGCCATGATCGAGCACGAGCTGGCCGGTTCGATGGTGAACGTGTCGTCGATCGTTGCCCGCGACCGGCGAACATCGGACAGTCGGAAACTATTCTCCGAGCAAGGCCGGGGTGGAAGCGATGACCAAGGTGGGTGGCACGGCGAGTTCGGCCGGTACAACATCCGGGTGAATGCGATCGTGCCCGGGTTCATCCACACGACCGGATACGGGGACGGTGCCGCAGAAGGTGAAACGATATGATCATCATGCAATGTGCCTTGAAGGGCGCTTCGGAAATCCGGAAGGAACATTGCGGAGGTAGCAGCCTTTCTGGGCAATCCGGGAAAAAAGAGCAAGGNTAACGTAAACGGTACCNTCGAATCGAAAGGTCACAATTGGAGCAGGATTAAGACGAATTTGGANCAATGGTCCATCGTTCGCCGCACCAATATTACCGGGTCCAACAGGCATGATACCGG] [+] EMBL BX467680 [GCAGAATCGCCACGAGGCTATACTTTAACCTTGCCCTTCATCTGCTCCGCAAGTATGGCCACTCCTTTA CAGGAAAGCTAGCCCTTGTGACCGGTGCCGGTTCTGGAATTGGCCGTGCGACAACCAAACTGTTGGCACGCGATGGAGCGATCGTTGTAGCGGTCGATCGTAACGTACAGGCGGCCCAGGAAACGATCGCATCGCTCACGGCGGGCGACAATGCGGCCTACGAGATGGACGTCTCGTCCGGCGACAGTGTTGATGCCGTGCTGAAGGAAGTGATTGGCCGGTACAAGCGCCCACCGACAGTGGTCGTTAATTCGGCCGGTATTACCCGCGATAACTTCCTGCTGAAGATGCCCGAGTCCGACTTTGATGCGGTGATCAACGTGAACCTGAAGGGTACGTGGTTGGTGCTGCAACGTTTCGGCCGGGCCATGATCGAGCACGAGCTGGCCGGTTCGATGGTGAACGTGTCGTCGATCGTTGCCCGCGACCGGCGAACATCGGACAGTCGGAAACTATTCTCCGAGCAAGGCCGGGGTGGAAGCGATGACCAAGGTGGGTGGCACGGCGAGTTCGGCCGGTACAACATCCGGGTGAATGCGATCGTGCCCGGGTTCATCCACACGACCGGATACGGGGACGGTGCCGCAGAAGGTGAAACGATATGATCATCATGCAATGTGCCTTGAAGGGCGCTTCGGAAATCCGGAAGGAACATTGCGGAGGTAGCAGCCTTTCTGGGCAATCCGGGAAAAAAGAGCAAGGNTAACGTAAACGGTACCNTCGAATCGAAAGGTCACAATTGGAGCAGGATTAAGACGAATTTGGANCAATGGTCCATCGTTCGCCGCACCAATATTACCGGGTCCAACAGGCATGATACCGG] [+] EMBL BX623247 [ CAAGTATGGCCACTCCTTTAGCAGGAAAGCTAGCCCTTGTGACCGGTGCCGGTTCTGGAATTGGCCGTGCGACAACCAAACTGTTGGCACGCGATGGAGCGATCGTTGTAGCGGTCGATCGTAACGTACAGGCGGCCCAGGAAACGATCGCATCGCTCACGGCGGGCGACAATGCGGCCTACGAGATGGACGTCTCGTCCGGCGACAGTGTTGATGCCGTGCTGAAGGAAGTGATTGGCCGGTACAAGCGCCCACCGACAGTGGTCGTTAATTCGGCCGGTATTACCCGCGATAACTTCCTGCTGAAGATGCCCGAGTCCGACTTTGATGCGGTGATCAACGTGAACCTGAAGGGTACGTGGTTGGTGCTGCAACGTTTCGGCCGGGCCATGATCGAGCACGAGCTGGCCGGTTCGATGGTGAACGTGTCGTCGATCGTTGCCCGC ACCGGC AACATCGGACAGTCG AACTATTCTCCGAGCAAGGCCGGGGTGGAAGCGATGACCAAGGT GGTGGCAC GCGAGTTCGGCCGGTACAACATCCGGGTGAATG ] consensusID : consensus_4939#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 404 fasta sequence [CCCGAGCAAGGCCGGGGTGGAAGCGATGACCAAGGTGGTGGCACGCGAGTTCGGCCGGTACAACATCCGGGTGAATGCGATCGTGCCCGGGTTCATCCACACGCCGATGACGGGGAC-GTGCCGCAGAAGGTGAAAGATATGATCATCATGCAATGTGCCTTGCGGCGCTTTGGAAATCCGGAAGAAATTGCGGAGGTAGCAGCCTTTCTGGCATCGGAAAAGAGCAGCTACGTAAACGGTACCTCGATCGAAGTCACTGGCGGATAGACGAATTGAAATGGTCCATCTTCCGCCCAATATTACGGCTCAAAAGGATGATACAGGTGTTACAGCTCAAAGCTACCTCGTACAAAACCATACTACCTCCCTTAATTGTGCATTTAATATTGAGAATGATTGAAGTG] [-] EMBL AGA281298 [CCCGAGCAAGGCCGGGGTGGAAGCGATGACCAAGGTGGTGGCACGCGAGTTCGGCCGGTACAACATCCGGGTGAATGCGATCGTGCCCGGGTTCATCCACACGCCGATGACGGGGAC GTGCCGCAGAAGGTGAAAGATATGATCATCATGCAATGTGCCTTGCGGCGCTTTGGAAATCCGGAAGAAATTGCGGAGGTAGCAGCCTTTCTGGCATCGGAAAAGAGCAGCTACGTAAACGGTACCTCGATCGAAGTCACTGGCGGATAGACGAATTGAAATGGTCCATCTTCCGCCCAATATTACGGCTCAAAAGGATGATACAGGTGTTACAGCTCAAAGCTACCTCGTACAAAACCATACTACCTCCCTTAATTGTGCATTTAATATTGAGAATGATTGAAGTG] [-] EMBL AGA281305 [ GGCACGCGAGTTCGGCCGGTACAACATCCGGGTGAATGCGATCGTGCCCGGGTTCATCCACACGCCGATGACGGGGACGGTGCCGCAGAAGGTGAAAGATATGATCATCATGCAATGTGCCTTGCGGCGCTTTGGAAATCCGGAAGAAATTGCGGAGGTAGCAGCCTTTCTGGCATCGGAAAAGAGCAGCTACGTAAACGGTACCTCGATCGAAGTCACTGGCGGATAGACGAATTGAAATGGTCCATCTTCCGCCCAATATTACGGCTCAAAAGGATGATACAGGTGTTACAGCTCAAAGCTACCTCGTACAAAACCATACTACCTCCCTTAATTGTGCATTTAATATTGAGAATGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4939#0 GCAGAATCGCCACGAGGCTATACTTTAACCTTGCCCTTCATCTGCTCCGCAAGTATGGCC 60 consensus_4939#1 ------------------------------------------------------------ consensus_4939#0 ACTCCTTTACAGGAAAGCTAGCCCTTGTGACCGGTGCCGGTTCTGGAATTGGCCGTGCGA 120 consensus_4939#1 ------------------------------------------------------------ consensus_4939#0 CAACCAAACTGTTGGCACGCGATGGAGCGATCGTTGTAGCGGTCGATCGTAACGTACAGG 180 consensus_4939#1 ------------------------------------------------------------ consensus_4939#0 CGGCCCAGGAAACGATCGCATCGCTCACGGCGGGCGACAATGCGGCCTACGAGATGGACG 240 consensus_4939#1 ------------------------------------------------------------ consensus_4939#0 TCTCGTCCGGCGACAGTGTTGATGCCGTGCTGAAGGAAGTGATTGGCCGGTACAAGCGCC 300 consensus_4939#1 ------------------------------------------------------------ consensus_4939#0 CACCGACAGTGGTCGTTAATTCGGCCGGTATTACCCGCGATAACTTCCTGCTGAAGATGC 360 consensus_4939#1 ------------------------------------------------------------ consensus_4939#0 CCGAGTCCGACTTTGATGCGGTGATCAACGTGAACCTGAAGGGTACGTGGTTGGTGCTGC 420 consensus_4939#1 ------------------------------------------------------------ consensus_4939#0 AACGTTTCGGCCGGGCCATGATCGAGCACGAGCTGGCCGGTTCGATGGTGAACGTGTCGT 480 consensus_4939#1 ------------------------------------------------------------ consensus_4939#0 CGATCGTTGCCCGCGACCGGCGAACATCGGACAGTCGGAAACTATTCTCCGAGCAAGGCC 540 consensus_4939#1 -----------------------------------------------CCCGAGCAAGGCC 13 ************ consensus_4939#0 GGGGTGGAAGCGATGACCAAGGTGGGTGGCACGGCGAGTTCGGCCGGTACAACATCCGGG 600 consensus_4939#1 GGGGTGGAAGCGATGACCAAGGTGG-TGGCACG-CGAGTTCGGCCGGTACAACATCCGGG 71 ************************* ******* ************************** consensus_4939#0 TGAATGCGATCGTGCCCGGGTTCATCCACACGACCGGATACGGGGACGGTGCCGCAGAAG 660 consensus_4939#1 TGAATGCGATCGTGCCCGGGTTCATCCACACG-CCGATGACGGGGACG-TGCCGCAGAAG 129 ******************************** *** ********* *********** consensus_4939#0 GTGAAACGATATGATCATCATGCAATGTGCCTTGAAGGGCGCTTCGGAAATCCGGAAGGA 720 consensus_4939#1 GTGAAA-GATATGATCATCATGCAATGTGCCTTG--CGGCGCTTTGGAAATCCGGAAGAA 186 ****** *************************** ******* ************* * consensus_4939#0 ACATTGCGGAGGTAGCAGCCTTTCTGGGCAATCCGGGAAAAAAGAGCAAGGNTAACGTAA 780 consensus_4939#1 --ATTGCGGAGGTAGCAGCCTTTCTGG------CATCGGAAAAGAGCA---GCTACGTAA 235 ************************* * ********* ****** consensus_4939#0 ACGGTACCNTCGAATCGAAAGGTCACAATTGGAGCAGGATTAAGACGAATTTGGANCAAT 840 consensus_4939#1 ACGGTACCTC--GATCGAA--GTCACTGGCGGAT--------AGACGAATT----GAAAT 279 ******** ****** ***** *** ********* *** consensus_4939#0 GGTCCATCGTTCGCCGCACCAATATTACCGGGTCCAACAGGCATGATACCGG-------- 892 consensus_4939#1 GGTCCATCTTCCGCC----CAATATTAC--GGCTCAAAAGG-ATGATACAGGTGTTACAG 332 ******** * **** ********* ** *** *** ******* ** consensus_4939#0 ------------------------------------------------------------ consensus_4939#1 CTCAAAGCTACCTCGTACAAAACCATACTACCTCCCTTAATTGTGCATTTAATATTGAGA 392 consensus_4939#0 ------------ consensus_4939#1 ATGATTGAAGTG 404 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||