These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [ACACCCCAGTAGTCGTGTTTGTTAGTGGAAACCTTGATTATTGTTTTTTTTTTATGCGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAATTAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCTAATAGTAAACTGCACACGCACGCTTCCTTCAGCTCGAGCGCGCTGATTTTCGCCAGATTGCGCCGCTTCTCCTCCTGCAGTAACTGCACGCTCTGGAGCAGCTGCTCGATCTGCCTCTCCTGGCTGGTGTTTTCGGCGCGGGCCGTTACGAGCAGCTCGGACAGATTCTTCACCTTCCACTCGAGCGCCACACTTTTGGGCGTCACCGGGGACGGTTTCTTCATCTCGCGCTTGCCGTTCGGCGTGCTGGTGATCATTTGTACCGCGCTTTGGCAGAGGGTAGCGCTGGGACCAGGCAA] [+] EMBL CNS08DSG [ACACCCCAGTAGTCGTGTTTGTTAGTGGAAACCTTGATTATTGTTTTTTTTTTATGCGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAATTAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCTAATAGTAAACTGCACACGCACGCTTCCTTCAGCTCGAGCGCGCTGATTTTCGCCAGATTGCGCCGCTTCTCCTCCTGCAGTAACTGCACGCTCTGGAGCAGCTGCTCGATCTGCCTCTCCTGGCTGGTGTTTTCGGCGCGGGCCGTTACGAGCAGCTCGGACAGATTCTTCACCTTCCACTCGAGCGCCACACTTTTGGGCGTCACCGGGGACGGTTTCTTCATCTCGCGCTTGCCGTTCGGCGTGCTGGTGATCATTTGTACCGCGCTTTGGCAGAGGGTAGCGCTGGGACCAGGCAA] consensusID : consensus_4956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 497 fasta sequence [AAACACACCCAGTAGTCGTGTTTGTTAGTGGAAAACCTTGATTATTGTTTTTTTTTTATGCGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAATTAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCTAATAGTAAACTGCACACTGCCTACTAACTAACGTTAAATTAACTTGCCTAACAATTCCGGCCCTGTGGTATCGCTCCCGTGTGTCCTAAACGATTGACCGTGCAACAATACAACTGCTTTTTTTTAGTGAATCAACTAGCACAGCAGGACCGAAACAGCGACGGAAATTTGTTGAAATTGCACCCGTTGCGAATGGG] [+] EMBL AGA281714 [AAACACACCCAGTAGTCGTGTTTGTTAGTGGAAAACCTTGATTATTGTTTTTTTTTTATGCGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAATTAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCTAATAGTAAACTGCACACTGCCTACTAACTAACGTTAAATTAACTTGCCTAACAATTCCGGCCCTGTGGTATCGCTCCCGTGTGTCCTAAACGATTGACCGTGCAACAATACAACTGCTTTTTTTTAGTGAATCAACTAGCACAGCAGGACCGAAACAGCGACGGAAATTTGTTGAAATTGCACCCGTTGCGAATGGG] [+] EMBL CNS08GAM [ ctTCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAATTAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTATTAATGTTATGCCCTTTAAAAAGAAT ] [+] EMBL CNS08G8I [ AAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTATTAATGTTATGCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4956#0 --ACAC-CCCAGTAGTCGTGTTTGTTAGTGGAAA-CCTTGATTATTGTTTTTTTTTTATG 56 consensus_4956#1 AAACACACCCAGTAGTCGTGTTTGTTAGTGGAAAACCTTGATTATTGTTTTTTTTTTATG 60 **** *************************** ************************* consensus_4956#0 CGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAAT 116 consensus_4956#1 CGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAAT 120 ************************************************************ consensus_4956#0 TAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCG 176 consensus_4956#1 TAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCG 180 ************************************************************ consensus_4956#0 CTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAAT 236 consensus_4956#1 CTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAAT 240 ************************************************************ consensus_4956#0 TTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCT 296 consensus_4956#1 TTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCT 300 ************************************************************ consensus_4956#0 AATAGTAAACTGCACAC-GCACGCTTCCT----TCAGCTCGA---GCGCGCTGATTTTCG 348 consensus_4956#1 AATAGTAAACTGCACACTGCCTACTAACTAACGTTAAATTAACTTGCCTAACAATTCCGG 360 ***************** ** ** ** * * * * ** *** * consensus_4956#0 CCAGATTGCGCCGCTTCTCCTCCTGCAGTAACTGCACGCTCTGGAGCAGCTGCTCGATCT 408 consensus_4956#1 CCCTGTGGTATCGCTC--CCGTGTGTCCTAAACGATTGACC--GTGCAACAATACAA-CT 415 ** * * **** ** ** *** * * * * *** * * * ** consensus_4956#0 GCCTCTCCTGGCTGGTGTTTTCGGCGCGGGCCGTTACGAGCAGCTCGGACAGATTCTTCA 468 consensus_4956#1 GCTTTTTTTTAGTGAATCAACTAGCACAGCAGGACCGAAACAGCGACGGAAATTTGTTGA 475 ** * * * ** ** * * * * **** * * ** ** * consensus_4956#0 CCTTCCACTCGAGCGCCACACTTTTGGGCGTCACCGGGGACGGTTTCTTCATCTCGCGCT 528 consensus_4956#1 AATTGCACCCGT------TGCGAATGGG-------------------------------- 497 ** *** ** * **** consensus_4956#0 TGCCGTTCGGCGTGCTGGTGATCATTTGTACCGCGCTTTGGCAGAGGGTAGCGCTGGGAC 588 consensus_4956#1 ------------------------------------------------------------ consensus_4956#0 CAGGCAA 595 consensus_4956#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||