These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [AAGCAAGAGGCTGCGAAGAACGATGGCAACACATAGAATTAAGCGAAGTCCGCAAAAAAAAACCCCCCTTTCCCGAATTTCTTCCTCTTTTGGATAGCGTACAGGAGCGGCCGGCCGGTTTTGCCTACCCGTGTGCAAAAAGGGGCCGGTAGTGTGTGTGTGGCGCGTGTGTGAAGCGAACATGAGTGTTGTAGTTAAATGAAGAAAGAGAGGGAGAGAGAGAGAGAAACTCACACACATACGCTAACCAGATAGCGAAAGCAGAACTACAAGGGGGAAAAAATCGCAGAAGAAATAATAATAATAATGAAAATAATAATATTAATAATAATAATAAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGATACAAATAATAATAATGAAAATAGTAATAATAATAACAGTGAAATGTTGAGAGACATAGTAGCGGCAGAGGGAAGCAGCAGTGCAACAGCGCGAAAGGAAAAGATAGAGAGTGGGTAAAAAGATAGCCATAGAAAAAGAAAGAAAGAGAAAGAAGAAAGAGAGAAGAGGGAAAATACACACAC] [+] EMBL BX615813 [AAGCAAGAGGCTGCGAAGAACGATGGCAACACATAGAATTAAGCGAAGTCCGCAAAAAAAAACCCCCCTTTCCCGAATTTCTTCCTCTTTTGGATAGCGTACAGGAGCGGCCGGCCGGTTTTGCCTACCCGTGTGCAAAAAGGGGCCGGTAGTGTGTGTGTGGCGCGTGTGTGAAGCGAACATGAGTGTTGTAGTTAAATGAAGAAAGAGAGGGAGAGAGAGAGAGAAACTCACACACATACGCTAACCAGATAGCGAAAGCAGAACTACAAGGGGGAAAAAATCGCAGAAGAAATAATAATAATAATGAAAATAATAATATTAATAATAATAATAAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGATACAAATAATAATAATGAAAATAGTAATAATAATAACAGTGAAATGTTGAGAGACATAGTAGCGGCAGAGGGAAGCAGCAGTGCAACAGCGCGAAAGGAAAAGATAGAGAGTGGGTAAAAAGATAGCCATAGAAAAAGAAAGAAAGAGAAAGAAGAAAGAGAGAAGAGGGAAAATACACACAC] consensusID : consensus_496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [CCGCCCACGCGTCCGGAAAAAAATCGCAGAAGAAATAATAATAATAATGAAAATAATAATATTAATAATAATAGTAAAAATAATAATAATAATAATAATAATAATAAAAATAATAATAATAATAATAATGATACAAATAATAATAATGAAAATAGTAATAATAATAACATTGAAATGTTGAGAGACACAGTAGCGGCAGAGGGAAGCAGCAGTGCAGCAGCGCGAAAGGAAGAGATAGAGAGTGGGTATAAAGATAGGCATAGAAAAAGAAAGAAAGAGAAAGAAGAAAGAGAGAAGAGCGAAAATACACACACAAGCAGCGAACCAAAATTCTTATGATTAAAACAAACTAAAAAGTAAGCTTAACTAAAACCCATTTTATATAAGCAGATATCTCTTTAAAGGAAAAAAAAACAAAACAAACAACGAAACAAACAAGCAAGCGTAGCAAAATGGACAAGGCAGGCTCGTATATTAAACGCTAGTAATTAGACAAACACACTCCCACACACACACACACACACACCCACACACACACACACAC] [+] EMBL BM622714 [CCGCCCACGCGTCCGGAAAAAAATCGCAGAAGAAATAATAATAATAATGAAAATAATAATATTAATAATAATAGTAAAAATAATAATAATAATAATAATAATAATAAAAATAATAATAATAATAATAATGATACAAATAATAATAATGAAAATAGTAATAATAATAACATTGAAATGTTGAGAGACACAGTAGCGGCAGAGGGAAGCAGCAGTGCAGCAGCGCGAAAGGAAGAGATAGAGAGTGGGTATAAAGATAGGCATAGAAAAAGAAAGAAAGAGAAAGAAGAAAGAGAGAAGAGCGAAAATACACACACAAGCAGCGAACCAAAATTCTTATGATTAAAACAAACTAAAAAGTAAGCTTAACTAAAACCCATTTTATATAAGCAGATATCTCTTTAAAGGAAAAAAAAACAAAACAAACAACGAAACAAACAAGCAAGCGTAGCAAAATGGACAAGGCAGGCTCGTATATTAAACGCTAGTAATTAGACAAACACACTCCCACACACACACACACACACACCCACACACACACACACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_496#0 AAGCAAGAGGCTGCGAAGAACGATGGCAACACATAGAATTAAGCGAAGTCCGCAAAAAAA 60 consensus_496#1 ------------------------------------------------------------ consensus_496#0 AACCCCCCTTTCCCGAATTTCTTCCTCTTTTGGATAGCGTACAGGAGCGGCCGGCCGGTT 120 consensus_496#1 ------------------------------------------------------------ consensus_496#0 TTGCCTACCCGTGTGCAAAAAGGGGCCGGTAGTGTGTGTGTGGCGCGTGTGTGAAGCGAA 180 consensus_496#1 ------------------------------------------------------------ consensus_496#0 CATGAGTGTTGTAGTTAAATGAAGAAAGAGAGGGAGAGAGAGAGAGAAACTCACACACAT 240 consensus_496#1 ------------------------------------------------------------ consensus_496#0 ACGCTAACCAGATAGCGAAAGCAGAACTACAAGGGGGAAAAAATCGCAGAAGAAATAATA 300 consensus_496#1 --------------------CCGCCCACGCGTCCGGAAAAAAATCGCAGAAGAAATAATA 40 * * ** *********************** consensus_496#0 ATAATAATGAAAATAATAATATTAATAATAATAATAAAAATAATAATAATAATAATAATA 360 consensus_496#1 ATAATAATGAAAATAATAATATTAATAATAATAGTAAAAATAATAATAATAATAATAATA 100 ********************************* ************************** consensus_496#0 ATAATAATAATAATAATAATAATAATAATAATAATGATACAAATAATAATAATGAAAATA 420 consensus_496#1 ATAATAAAAATAATAATAATAATAATAAT------GATACAAATAATAATAATGAAAATA 154 ******* ********************* ************************* consensus_496#0 GTAATAATAATAACAGTGAAATGTTGAGAGACATAGTAGCGGCAGAGGGAAGCAGCAGTG 480 consensus_496#1 GTAATAATAATAACATTGAAATGTTGAGAGACACAGTAGCGGCAGAGGGAAGCAGCAGTG 214 *************** ***************** ************************** consensus_496#0 CAACAGCGCGAAAGGAAAAGATAGAGAGTGGGTAAAAAGATAGCCATAGAAAAAGAAAGA 540 consensus_496#1 CAGCAGCGCGAAAGGAAGAGATAGAGAGTGGGTATAAAGATAGGCATAGAAAAAGAAAGA 274 ** ************** **************** ******** **************** consensus_496#0 AAGAGAAAGAAGAAAGAGAGAAGAGGGAAAATACACACAC-------------------- 580 consensus_496#1 AAGAGAAAGAAGAAAGAGAGAAGAGCGAAAATACACACACAAGCAGCGAACCAAAATTCT 334 ************************* ************** consensus_496#0 ------------------------------------------------------------ consensus_496#1 TATGATTAAAACAAACTAAAAAGTAAGCTTAACTAAAACCCATTTTATATAAGCAGATAT 394 consensus_496#0 ------------------------------------------------------------ consensus_496#1 CTCTTTAAAGGAAAAAAAAACAAAACAAACAACGAAACAAACAAGCAAGCGTAGCAAAAT 454 consensus_496#0 ------------------------------------------------------------ consensus_496#1 GGACAAGGCAGGCTCGTATATTAAACGCTAGTAATTAGACAAACACACTCCCACACACAC 514 consensus_496#0 ------------------------------ consensus_496#1 ACACACACACACCCACACACACACACACAC 544 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||