These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1033 fasta sequence [CCGGCCTTACTTTTACCAGGTTGTCAATTTGTTCGGGATAAGCCCACCTGTATAATAAACCCACTTTGGGCCGAACGAAGCTTCACCCTTCGCAGCCGGGGTAAATTTCGCGAGAAAAACAATGTTGTACACTGTCAAAGTGGTGGGAAACGGTTCAAAACAGAGCGAGCGAGCGAGCAAGAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAACAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACGGGTGGAAGAAAGTGACAAGATTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCCTCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAAAACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATCCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATAAAAAAGACTGAA--------GGAGATAGCAGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGTGTCACTGAAGACAGTGAAGCGTCTAGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAACGAGTTCTGCTCGGACGTGACGTTCATCGTCGGTGCGAGCAAGCAGCGCATCCACGCCCACAAGCTGCTGCTCGTGA] [+] EMBL BM597127 [CCGGCCTTACTTTTACCAGGTTGTCAATTTGTTCGGGATAAGCCCACCTGTATAATAAACCCACTTTGGGCCGAACGAAGCTTCACCCTTCGCAGCCGGGGTAAATTTCGCGAGAAAAACAATGTTGTACACTGTCAAAGTGGTGGGAAACGGTTCAAAACAGAGCGAGCGAGCGAGCAAGAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAACAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACGGGTGGAAGAAAGTGACAAGATTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCCTCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAAAACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATCCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCAGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATAAAAAAGACTGAA GGAGATAGCAGGAAGTTTTCCAACCAGGCGACGGCATCC ] [+] EMBL AGA282084 [ GAAAAACAATGTTGTACACTGTCAAAGTGGTGGGATACGGTTCAAAACAGAGCGAGCGAGCGAGCAAGAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAACAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACCGGTGGAAGAAAGTGACAAGATTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCCTCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAAAACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATCCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGGCAAGCGGg ] [+] EMBL BX603641 [ CCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATATAAAAGACTGAAGTATCGCCGGAGGTAGCGGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGTGTCACTGAAGACAGTGAAGCGTCTAGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAACGAGTTCTGCTCGGACGTGACGTTCATCGTCGGTGCGAGCAAGCAGCGCATCCACGCCCACAAGCTGCTGCTCGTGA] consensusID : consensus_4962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [GCAGAATCGGCACGATGGCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATATAAAAGACTGAAGTATCGCCGGAGGTAGCGGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGGTGTCACTGAAGACAGTGAAGCGTCTAGTGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAAGCGAGTTCTGCTCGGACGTGACGTTCATCGTCGGGTGCGAG] [+] EMBL BX469845 [GCAGAATCGGCACGATGGCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATATAAAAGACTGAAGTATCGCCGGAGGTAGCGGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGGTGTCACTGAAGACAGTGAAGCGTCTAGTGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAAGCGAGTTCTGCTCGGACGTGACGTTCATCGTCGGGTGCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4962#0 CCGGCCTTACTTTTACCAGGTTGTCAATTTGTTCGGGATAAGCCCACCTGTATAATAAAC 60 consensus_4962#1 ------------------------------------------------------------ consensus_4962#0 CCACTTTGGGCCGAACGAAGCTTCACCCTTCGCAGCCGGGGTAAATTTCGCGAGAAAAAC 120 consensus_4962#1 ------------------------------------------------------------ consensus_4962#0 AATGTTGTACACTGTCAAAGTGGTGGGAAACGGTTCAAAACAGAGCGAGCGAGCGAGCAA 180 consensus_4962#1 ------------------------------------------------------------ consensus_4962#0 GAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAA 240 consensus_4962#1 ------------------------------------------------------------ consensus_4962#0 CAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACGGGTGGAAGAAAGTGACAAGA 300 consensus_4962#1 ------------------------------------------------------------ consensus_4962#0 TTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCC 360 consensus_4962#1 ------------------------------------------------------------ consensus_4962#0 TCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAA 420 consensus_4962#1 ------------------------------------------------------------ consensus_4962#0 AACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATC-CGCGACGTTCC 479 consensus_4962#1 -----------------------------GCAGAATCGGC--ACGATGGCGCGACGTTCC 29 ** *** ** ** *********** consensus_4962#0 GGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCAC 539 consensus_4962#1 GGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCAC 89 ************************************************************ consensus_4962#0 CGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGG 599 consensus_4962#1 CGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGG 149 ************************************************************ consensus_4962#0 CGGAATAAAAAAGACTGAAG--------GAGATAGCAGGAAGTTTTCCAACCAGGCGACG 651 consensus_4962#1 CGGAATATAAAAGACTGAAGTATCGCCGGAGGTAGCGGGAAGTTTTCCAACCAGGCGACG 209 ******* ************ *** **** *********************** consensus_4962#0 GCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGG 711 consensus_4962#1 GCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGG 269 ************************************************************ consensus_4962#0 GCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGA 771 consensus_4962#1 GCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGA 329 ************************************************************ consensus_4962#0 GCAGGG-TGTCACTGAAGACAGTGAAGCGTCTAG--GCACAAATAGACTAAACACACACA 828 consensus_4962#1 GCAGGGGTGTCACTGAAGACAGTGAAGCGTCTAGTGGCACAAATAGACTAAACACACACA 389 ****** *************************** ************************ consensus_4962#0 CACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATC 888 consensus_4962#1 CACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATC 449 ************************************************************ consensus_4962#0 CTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATG 948 consensus_4962#1 CTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATG 509 ************************************************************ consensus_4962#0 GTCAACAA-CGAGTTCTGCTCGGACGTGACGTTCATCGTCGG-TGCGAGCAAGCAGCGCA 1006 consensus_4962#1 GTCAACAAGCGAGTTCTGCTCGGACGTGACGTTCATCGTCGGGTGCGAG----------- 558 ******** ********************************* ****** consensus_4962#0 TCCACGCCCACAAGCTGCTGCTCGTGA 1033 consensus_4962#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||