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Anopheles gambiae
cluster # 4962 cluster # 4962       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4962#0 length = 1033 sequences # 3  
consensus_4962#1 length = 558 sequences # 1  

consensusID : consensus_4962#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1033
fasta sequence
                              [CCGGCCTTACTTTTACCAGGTTGTCAATTTGTTCGGGATAAGCCCACCTGTATAATAAACCCACTTTGGGCCGAACGAAGCTTCACCCTTCGCAGCCGGGGTAAATTTCGCGAGAAAAACAATGTTGTACACTGTCAAAGTGGTGGGAAACGGTTCAAAACAGAGCGAGCGAGCGAGCAAGAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAACAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACGGGTGGAAGAAAGTGACAAGATTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCCTCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAAAACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATCCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATAAAAAAGACTGAA--------GGAGATAGCAGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGTGTCACTGAAGACAGTGAAGCGTCTAGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAACGAGTTCTGCTCGGACGTGACGTTCATCGTCGGTGCGAGCAAGCAGCGCATCCACGCCCACAAGCTGCTGCTCGTGA]

[+] EMBL BM597127             [CCGGCCTTACTTTTACCAGGTTGTCAATTTGTTCGGGATAAGCCCACCTGTATAATAAACCCACTTTGGGCCGAACGAAGCTTCACCCTTCGCAGCCGGGGTAAATTTCGCGAGAAAAACAATGTTGTACACTGTCAAAGTGGTGGGAAACGGTTCAAAACAGAGCGAGCGAGCGAGCAAGAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAACAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACGGGTGGAAGAAAGTGACAAGATTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCCTCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAAAACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATCCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCAGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATAAAAAAGACTGAA        GGAGATAGCAGGAAGTTTTCCAACCAGGCGACGGCATCC                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AGA282084            [                                                                                                                 GAAAAACAATGTTGTACACTGTCAAAGTGGTGGGATACGGTTCAAAACAGAGCGAGCGAGCGAGCAAGAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAACAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACCGGTGGAAGAAAGTGACAAGATTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCCTCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAAAACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATCCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGGCAAGCGGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX603641             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATATAAAAGACTGAAGTATCGCCGGAGGTAGCGGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGTGTCACTGAAGACAGTGAAGCGTCTAGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAACGAGTTCTGCTCGGACGTGACGTTCATCGTCGGTGCGAGCAAGCAGCGCATCCACGCCCACAAGCTGCTGCTCGTGA]


>consensus_4962#0 CCGGCCTTACTTTTACCAGGTTGTCAATTTGTTCGGGATAAGCCCACCTGTATAATAAAC CCACTTTGGGCCGAACGAAGCTTCACCCTTCGCAGCCGGGGTAAATTTCGCGAGAAAAAC AATGTTGTACACTGTCAAAGTGGTGGGAAACGGTTCAAAACAGAGCGAGCGAGCGAGCAA GAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAA CAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACGGGTGGAAGAAAGTGACAAGA TTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCC TCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAA AACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATCCGCGACGTTCCG GACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACC GCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGC GGAATAAAAAAGACTGAAGGAGATAGCAGGAAGTTTTCCAACCAGGCGACGGCATCCCTC ACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACG AGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGTGT CACTGAAGACAGTGAAGCGTCTAGGCACAAATAGACTAAACACACACACACATACACATC GAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCG CTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAACGAG TTCTGCTCGGACGTGACGTTCATCGTCGGTGCGAGCAAGCAGCGCATCCACGCCCACAAG CTGCTGCTCGTGA



consensusID : consensus_4962#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence
                              [GCAGAATCGGCACGATGGCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATATAAAAGACTGAAGTATCGCCGGAGGTAGCGGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGGTGTCACTGAAGACAGTGAAGCGTCTAGTGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAAGCGAGTTCTGCTCGGACGTGACGTTCATCGTCGGGTGCGAG]

[+] EMBL BX469845             [GCAGAATCGGCACGATGGCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATATAAAAGACTGAAGTATCGCCGGAGGTAGCGGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGGTGTCACTGAAGACAGTGAAGCGTCTAGTGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAAGCGAGTTCTGCTCGGACGTGACGTTCATCGTCGGGTGCGAG]


>consensus_4962#1 GCAGAATCGGCACGATGGCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAG CAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGG CCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATATAAAAGACTGAAGTATCGCCGGAG GTAGCGGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAG CCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGA CCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGGTGTCACTGAAGACAGTGAAGCGTC TAGTGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGA GACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCG ACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAAGCGAGTTCTGCTCGGACGTGACG TTCATCGTCGGGTGCGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4962#0      CCGGCCTTACTTTTACCAGGTTGTCAATTTGTTCGGGATAAGCCCACCTGTATAATAAAC 60
consensus_4962#1      ------------------------------------------------------------
                                                                                  

consensus_4962#0      CCACTTTGGGCCGAACGAAGCTTCACCCTTCGCAGCCGGGGTAAATTTCGCGAGAAAAAC 120
consensus_4962#1      ------------------------------------------------------------
                                                                                  

consensus_4962#0      AATGTTGTACACTGTCAAAGTGGTGGGAAACGGTTCAAAACAGAGCGAGCGAGCGAGCAA 180
consensus_4962#1      ------------------------------------------------------------
                                                                                  

consensus_4962#0      GAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAA 240
consensus_4962#1      ------------------------------------------------------------
                                                                                  

consensus_4962#0      CAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACGGGTGGAAGAAAGTGACAAGA 300
consensus_4962#1      ------------------------------------------------------------
                                                                                  

consensus_4962#0      TTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCC 360
consensus_4962#1      ------------------------------------------------------------
                                                                                  

consensus_4962#0      TCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAA 420
consensus_4962#1      ------------------------------------------------------------
                                                                                  

consensus_4962#0      AACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATC-CGCGACGTTCC 479
consensus_4962#1      -----------------------------GCAGAATCGGC--ACGATGGCGCGACGTTCC 29
                                                   **    ***    ** **  ***********

consensus_4962#0      GGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCAC 539
consensus_4962#1      GGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCAC 89
                      ************************************************************

consensus_4962#0      CGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGG 599
consensus_4962#1      CGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGG 149
                      ************************************************************

consensus_4962#0      CGGAATAAAAAAGACTGAAG--------GAGATAGCAGGAAGTTTTCCAACCAGGCGACG 651
consensus_4962#1      CGGAATATAAAAGACTGAAGTATCGCCGGAGGTAGCGGGAAGTTTTCCAACCAGGCGACG 209
                      ******* ************        *** **** ***********************

consensus_4962#0      GCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGG 711
consensus_4962#1      GCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGG 269
                      ************************************************************

consensus_4962#0      GCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGA 771
consensus_4962#1      GCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGA 329
                      ************************************************************

consensus_4962#0      GCAGGG-TGTCACTGAAGACAGTGAAGCGTCTAG--GCACAAATAGACTAAACACACACA 828
consensus_4962#1      GCAGGGGTGTCACTGAAGACAGTGAAGCGTCTAGTGGCACAAATAGACTAAACACACACA 389
                      ****** ***************************  ************************

consensus_4962#0      CACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATC 888
consensus_4962#1      CACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATC 449
                      ************************************************************

consensus_4962#0      CTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATG 948
consensus_4962#1      CTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATG 509
                      ************************************************************

consensus_4962#0      GTCAACAA-CGAGTTCTGCTCGGACGTGACGTTCATCGTCGG-TGCGAGCAAGCAGCGCA 1006
consensus_4962#1      GTCAACAAGCGAGTTCTGCTCGGACGTGACGTTCATCGTCGGGTGCGAG----------- 558
                      ******** ********************************* ******           

consensus_4962#0      TCCACGCCCACAAGCTGCTGCTCGTGA 1033
consensus_4962#1      ---------------------------
                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)