These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 675 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCG-----GTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTG-CGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATG-GAGTCGGGCGCCAAGGGCTGCG-AGGT-GGTGGTGTCGGGC-AAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGTGCTGCTGGCGCCAGGGTGTGCTGGGCATCAAGGTCAAAATCATGTTGCCGTGGGATCCGAATGGCAAGATCGGCCCGAAGAAGCCCCTGCCCGACAACGTGTCCGTGGTTAGTTTTTTTTTTTGTA] [+] EMBL BM651888 [CCGCCCACGCGTCCGCCCACGCGTCCG GTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTG CGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATG GAGTCGGGCGCCAAGGGCTGCG AGGT GGTGGTGTCTGGC AAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGT ] [+] EMBL BM608966 [ CCGCGGACGCGTGGGAAAATGTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTG CGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATG GAGTCGGGCGCCAAGGGCTGCGAAGGTGGGTGGTGTCGGGCAAAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGTGCTGCTGGCGCCAGGGTGTGCTGGGCATCAAGGTCAAAATCATGTTGCCGTGGGATCCGAA ] [+] EMBL CNS09A3W [ CGTGAGCTGGCCGAGGATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTGACGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATGAGAGTCGGGCGCCAAGGGCTGCG AGGT GGTGGTCTCGGGC AAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAAAAAGTCGACACCGCCACCCGGCACGTGCTGCT GCGCCAGGGTGTGCTGGGCATCAAGGTCAAGATCATGTTGCCGTGGGATCCGAATGGCAAGATCGGCCCGAAGAAGCCCCTGCCCGACAACGTGTCCGTGGTTAGTTTTTTTTTTTGTA] consensusID : consensus_4966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [CCGTGACCGACCTGCTGGGCAAATGCTGTGCAGTCTTTGATTTACCGTCCAGGGTGTTGAAAGGTGTTATTGAACACAACAACAAAAATTATTCACAGAAGCAGCAGCATCAATCCCAAAAAAATCCAAATCTAACGGAAGAAAAAAAAAACGAAAACGTTGCACAAAACGGCACGTGTGGAGATTTTTTGTGTTGTATAGTACTCGTTCTACGTTCGTTTGTTTCCGATTTGAATAGTTTTGAGTTTGCTGTTTTGGTTGTCTGTAAAAAAAAACAAATAAAACAATATCTCCAATCCGTATCACGCCCATGCGCCCGAGTTTTGCCTTTAAAACAGGGTTTAAGGGTACTTAAAAACGGCTAGTGGAACAAGTAGAACGAAAAAACAACCCATCCCGCCTCCCAATTCTACCACCACCCACTATCCGGTTTTATTCCCCGTAAGACATATTTTCGGCCACGGCCCGGGGGTAACCTTCCCACAAGGGGGAGAAAAAAAAACACACACACCCCGTCACAGTCTCTCGGCGTCCAAGCAGTGTTGTCGTAAAACAACAACATCAACACACCCCTAAAACGCAAAGCAAGTTCTCTAAAGATGCTTCTCAGCCGAAATAAACT] [+] EMBL BM590931 [CCGTGACCGACCTGCTGGGCAAATGCTGTGCAGTCTTTGATTTACCGTCCAGGGTGTTGAAAGGTGTTATTGAACACAACAACAAAAATTATTCACAGAAGCAGCAGCATCAATCCCAAAAAAATCCAAATCTAACGGAAGAAAAAAAAAACGAAAACGTTGCACAAAACGGCACGTGTGGAGATTTTTTGTGTTGTATAGTACTCGTTCTACGTTCGTTTGTTTCCGATTTGAATAGTTTTGAGTTTGCTGTTTTGGTTGTCTGTAAAAAAAAACAAATAAAACAATATCTCCAATCCGTATCACGCCCATGCGCCCGAGTTTTGCCTTTAAAACAGGGTTTAAGGGTACTTAAAAACGGCTAGTGGAACAAGTAGAACGAAAAAACAACCCATCCCGCCTCCCAATTCTACCACCACCCACTATCCGGTTTTATTCCCCGTAAGACATATTTTCGGCCACGGCCCGGGGGTAACCTTCCCACAAGGGGGAGAAAAAAAAACACACACACCCCGTCACAGTCTCTCGGCGTCCAAGCAGTGTTGTCGTAAAACAACAACATCAACACACCCCTAAAACGCAAAGCAAGTTCTCTAAAGATGCTTCTCAGCCGAAATAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4966#0 CCGCCCACGCGTCCG-CCCACGCGTCCGGTACAACACCGTGTCGAAAAAACGCCGGTTTG 59 consensus_4966#1 ------CCGTGACCGACCTGCTGGGCAAATGCTGTGCAGTCTTTGATTTACCGTCCAGGG 54 ** * *** ** * * * * * * ** * * ** * consensus_4966#0 TGGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGG 119 consensus_4966#1 TGTTGAAAGGTGT------TATTGAACACAACAA---CAAAAATTATTCACAGAAGCAGC 105 ** ** ** * * **** **** * * * * * * * ** consensus_4966#0 ATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGG 179 consensus_4966#1 AGCATCAATCC--CAAAAAAATCCAAATCTAACGGAAGAAAAAAAAAACGAAAACGTTGC 163 * * *** * * *** * * ** * * *** * * ** consensus_4966#0 CCAC--CCGCACCCA---GAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGAC 234 consensus_4966#1 ACAAAACGGCACGTGTGGAGATTTTTTGTGTTGTATAGTACTCGTTCTACGTTCGTTTGT 223 ** * **** * * ** ** * * ** * * *** * * consensus_4966#0 CGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGT-TGAGCTGTACGCCGAGA 293 consensus_4966#1 TTCCG--ATTTG-AATAGTTTTGAGTTTGCTGTTTTGGTTGTCTGTAAAAAAAAACAAAT 280 *** * * ** **** * ** *** ** ** * * * consensus_4966#0 AGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTGCGCTACAAGCTGA 353 consensus_4966#1 AAAACAATATCTCCAATCCGTATCACGCCCATGCGCCCGAGTT-TTGCCTTTAAAACAG- 338 * * * * ** ** * * * * ** * *** * ** * * consensus_4966#0 TCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATGGAGTCGG 413 consensus_4966#1 -----GGTTTAAGGGTACTTAAAAACGGCTA--GTGGAACAAGTAGAACGAAAAAACAAC 391 ** * ** * * **** *** * * * * consensus_4966#0 GCGCCAAGGGCTGCGAGGTGGTGGTGTCGGGCAAGCTGCGCGGTCAGCGTGCCAAGTCGA 473 consensus_4966#1 CCATCCCG--CCTCCCAATTCTACCACCACCCA--CTATCCGGTTTTATTCCCCGTAAGA 447 * * * * * * * * ** ** **** * ** ** consensus_4966#0 TGAAGTT-CGTCGACGGACTGATGAT--CCATTCCGGCGATCCGTGCAACGAGTACGTCG 530 consensus_4966#1 CATATTTTCGGCCACGGCCCGGGGGTAACCTTCCCACAAGGGGGAGAAAAAAAAACACAC 507 * ** ** * **** * * * * ** * ** * * ** * ** consensus_4966#0 ACACCGCCACCCGGCACGTGCTGCTGGCG-CCAGGGTGTGCTGGGCATCAAGGTCAAAAT 589 consensus_4966#1 ACACC-----CCGTCACAGTCTCTCGGCGTCCAAGCAGTGTTGTCGTAAAACAACAACAT 562 ***** *** *** ** **** *** * *** ** ** *** ** consensus_4966#0 CATGTTGCCGTGGGATCCGAATGGCAAGATCGGCCCGAAGAAGCCCCTGCCCGACAACGT 649 consensus_4966#1 CAACACACCCCTAAAAC-GCAAAGCAAGTTC--TCTAAAGATGCTTCTCAGCCGAAATAA 619 ** ** * * * * ***** ** * **** ** ** * ** consensus_4966#0 GTCCGTGGTTAGTTTTTTTTTTTGTA 675 consensus_4966#1 ACT----------------------- 622 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||