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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 706 fasta sequence
[CCGGGGCTTTCCGCTAGTTCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTTCTCCAACTGATCTGTGTGGCTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGG]
[+] EMBL BM606167 [CCGGGGCTTTCCGCTAGTTCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTTCTCCAACTGATCTGTGTGGCTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGG]
[+] EMBL AGA282128 [ GCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTCCACCAACTGATCTGTGTGGCTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTG CTGCTGCCGTTGGTCAGACCGAGCCCGAAATTTGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAACCCCCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCGCGCTCGCTTTTCGCCCGTGAACAAAAGGATG ]
consensusID : consensus_4971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[CCGCATTTGCTCACGATTTTGATTGCGGCAGATTGCGTTGTGAATGGTCATTTAACGACGGCAGGCAAAAGCATTAAAACGAGCCTGGGTGGGAGTCAATGATTCGTTGAGTTTTTTCCGCAAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCGACACTGGTGCTGCTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGGTACGCGAGCTGGCACGGCGCAGTGAGTGGAAGGTGCTCGGGGACCGGTTGCTGCAGCGGCTCACCTTCGGCACGGCCGGGCTGCGCGGCGTGATGCAGGCCGGGTTTAATGCGATGAACGATCTGGTGGTCATACAGTCGGCGCAAGG]
[+] EMBL BM624217 [CCGCATTTGCTCACGATTTTGATTGCGGCAGATTGCGTTGTGAATGGTCATTTAACGACGGCAGGCAAAAGCATTAAAACGAGCCTGGGTGGGAGTCAATGATTCGTTGAGTTTTTTCCGCAAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCGACACTGGTGCTGCTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGGTACGCGAGCTGGCACGGCGCAGTGAGTGGAAGGTGCTCGGGGACCGGTTGCTGCAGCGGCTCACCTTCGGCACGGCCGGGCTGCGCGGCGTGATGCAGGCCGGGTTTAATGCGATGAACGATCTGGTGGTCATACAGTCGGCGCAAGG]
consensusID : consensus_4971#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[CCGCCCACGCGTCCGCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGT]
[+] EMBL BM617735 [CCGCCCACGCGTCCGCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4971#0 CCGGGGCTTTCCGCTAGTTCG--TGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTC 58
consensus_4971#2 ------CCGCCCACGCGTCCGCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTC 54
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 TAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACG 118
consensus_4971#2 TAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACG 114
consensus_4971#1 ------------------------------------------------------------
consensus_4971#0 AACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATC 178
consensus_4971#2 AACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATC 174
consensus_4971#1 ------------------------------------------CCGCATTTGCTCACGATT 18
* ** * * *** **
consensus_4971#0 CAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCT 238
consensus_4971#2 CAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCT 234
consensus_4971#1 T------TGATTGCGGCAGATTGCGTTGTG--AATGGT-CATTTAACGACGGCAGGCAAA 69
***** *** * * * * * ** * * * * **
consensus_4971#0 TGCAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTTCTCCAACTGATCTGTGTGG 298
consensus_4971#2 TGCAGCAACACAAAGGAAAAGGAACTTCACAG---------------------------- 266
consensus_4971#1 AGCATTAAAACGAGCCTGGGTGGGAGTCAATGATTCG---------------TTGAGTTT 114
*** ** ** * * *** *
consensus_4971#0 CTTCCGCAAAA-CACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAA 357
consensus_4971#2 -TTCCGCAAAA-CACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAA 324
consensus_4971#1 TTTCCGCAAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAA 174
********** ************************************************
consensus_4971#0 GCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTG 417
consensus_4971#2 GCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTG 384
consensus_4971#1 GCACAGGCACACATACACCATACCCGAGCGACACTGGTGCTGCT------GCTGCCGTTG 228
***************************** *** ********** **********
consensus_4971#0 GTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCC 477
consensus_4971#2 GTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCC 444
consensus_4971#1 GTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCC 288
************************************************************
consensus_4971#0 ATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGG 537
consensus_4971#2 ATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGG 504
consensus_4971#1 ATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGG 348
************************************************************
consensus_4971#0 CATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGC 597
consensus_4971#2 CATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGT--------------------- 543
consensus_4971#1 CATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGC 408
***************************************
consensus_4971#0 TTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGA 657
consensus_4971#2 ------------------------------------------------------------
consensus_4971#1 TTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGA 468
consensus_4971#0 ATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGG----------- 706
consensus_4971#2 ------------------------------------------------------------
consensus_4971#1 ATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGGTACGCGAGCTG 528
consensus_4971#0 ------------------------------------------------------------
consensus_4971#2 ------------------------------------------------------------
consensus_4971#1 GCACGGCGCAGTGAGTGGAAGGTGCTCGGGGACCGGTTGCTGCAGCGGCTCACCTTCGGC 588
consensus_4971#0 ------------------------------------------------------------
consensus_4971#2 ------------------------------------------------------------
consensus_4971#1 ACGGCCGGGCTGCGCGGCGTGATGCAGGCCGGGTTTAATGCGATGAACGATCTGGTGGTC 648
consensus_4971#0 -----------------
consensus_4971#2 -----------------
consensus_4971#1 ATACAGTCGGCGCAAGG 665
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||