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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 910 fasta sequence
[CGCGTCTGGCTCTCCTGACGGTCTAGGCACAGCTCCTGCTCTCTTCACGGTCCAGGCATAGCCGCCGGCGAACGAATTAGAGACATTGTAACCGATTAGATAAGCACTAGTACTATTTGTGTAACGTTCACTTTTTTGCCACTTGATTCCCAAAATGTTACAATATCTTTCCTTTCACAGTTTTCAATTTGAATCACGCGGTATGCAATTACGAGAGTAAATCTAGTTTACTGGAAGTAAGTTTTCGTGTGTCTAAGTTGGTAACATGCAAGTGCTCGAGCGTGTGCCTATTGACGTGTGCTCGCATTGGGTGCTCGAATTAGGGTGCTCGACGGATTTCAATTGGCGGTTGATGTCAGCTCCCAACTGTGGTAAGGCCATGACATGGTCGCCACACACTTTTTGTTCCGTGTGGGTTTTGTGTACCGGAATGGCGAAGCGTTTTTGTTGTTTGTACCAATACCCGGTCGGTTTTCTCTTGTATGAAGCACACATTGTTTAACACACGGCCTTTTTTCGTCCGGACCATGAATGACTTCTTGATTATCGCAGGTCTGCATCCTCTACCAAAGTTCTGCTCGAGACGCACTTTCACTTGTTACGTGTCGTCTCGTACATGAAGATTACATGCAATCTCTTTGGTTTATGATAAGTTATACCCTGCAAATCGGTTGTAGCACCCAAATCAGTAAGTAAGTGAGTTAGTAAGTAAGTAAGTAATTGAAATCAAAACTAAAGGAAAACACGCAAAACTGTAATACAACAAAACCGGTGTACACACGAACTCCATATGAAACATTGCTTCTTCTTCTTCTTCGCCGTGGCACATGCGCGCGTGCGGCTAGAATACTCCGCCTATACAACGCAATGAGCAATGTAACATGTAGTAGTTAATTGTACTAAGCGCATT]
[+] EMBL AGA282536 [CGCGTCTGGCTCTCCTGACGGTCTAGGCACAGCTCCTGCTCTCTTCACGGTCCAGGCATAGCCGCCGGCGAACGAATTAGAGACATTGTAACCGATTAGATAAGCACTAGTACTATTTGTGTAACGTTCACTTTTTTGCCACTTGATTCCCAAAATGTTACAATATCTTTCCTTTCACAGTTTTCAATTTGAATCACGCGGTATGCAATTACGAGAGTAAATCTAGTTTACTGGAAGTAAGTTTTCGTGTGTCTAAGTTGGTAACATGCAAGTGCTCGAGCGTGTGCCTATTGACGTGTGCTCGCATTGGGTGCTCGAATTAGGGTGCTCGACGGATTTCAATTGGCGGTTGATGTCAGCTCCCAACTGTGGTAAGGCCATGACATGGTCGCCACACACTTTTTGTTCCGTGTGGGTTTTGTGTACCGGAATGGCGAAGCGTTTTTG ]
[+] EMBL BX628160 [ gGTTTTCGTGTGTCTAAGTTGGTAACATGCAAGTGCTCGAGCGTGTGCCTATTGACGTGTGCTCGCATTGGGTGCTCGAATTAGGGTGCTCGACGGATTTCAATTGGCGGTTGATGTCAGCTCCCAACTGTGGTAAGGCCATGACATGGTCGCCACACACTTTTTGTTCCGTGTGGGTTTTGTGTACCGGAATGGCGAAGCGTTTTTGTTGTTTGTACCAATACCCGGTCGGTTTTCTCTTGTATGAAGCACACATTGTTTAACACACGGCCTTTTTTCGTCCGGACCATGAATGACTTCTTGATTATCGCAGGTCTGCATCCTCTACCAAAGTTCTGCTCGAGACGCACTTTCACTTGTTACGTGTCGTCTCGTACATGAAGATTACATGCAATCTCTTTGGTTTATGATAAGTTATACCCTGCAAATCGGTTGTAGCACCCAAATCAGTAAGTAAGTGAGTTAGTAAGTAAGTAAGTAATTGAAATCAAAACTAAAGGAAAACACGCAAAACTGTAATACAACAAAACCGGTGTACACACGAACTCCATATGAAACATTGCTTCTTCTTCTTCTTCGCCGTGGCACATGCGCGCGTGCGGCTAGAATACTCCGCCTATACAACGCAATGAGCAATGTAACATGTAGTAGTTAATTGTACTAAGCGCATT]
consensusID : consensus_4981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[TTCGCGTCTGGCTCTCCTGACGGTCTAGGCACAGCTCCTGCTCTCTTCACGGTCCAGGCATAGCCGCCGGCGAACGAACTAGAGACATTGTAACTGATTAAATAAGCACTAGTACTGTTTGTGTAACGTTGACTTTTTTGCCACTTGTTTGGCTACACTGGTGGACATAAAAATAGGAAAAAAATTTTGGATGTGGAATAAAGGATGTGCAAGTTCTACCGTGGCCTGCGTTGAGTCCTGACCTCAACCCGATTGAAAATCTGTGGTCAACTCGCAAGCATCAGCTAAAGAACCAGCCTGCACGTTCAGCCGATGATCTATGGACACGCTGCAAGGTTATGTGGAAACGCATACCCAGAAGCGAATGCCGTAAGCTCATCGGCGATATGGCCAAACGCTGTCAGGAAGTGATAGCGATTAACGGTCACCACATTGACCGTTAGAATGTGTTTTCGCTCTGTGGAACACCGCAACACCTCCTCCCAACAACCACTTAAACAGTCCTTTTCAGGGCTACCAAATATTTCTGACAAGAACTATGTCTTTCGGTCACAGAAAAAAGTTCCTATTTTTGTGTCCACCAGTGTACCTTGTGTGGGTGGACCATTTTTTTATTTGATTCCCAAAATGTTACAATGTCTTTCCTTTCACAGTTTTCAATTTGAATCACGCGGTATGCAATTACGAGAGTAAATCT]
[+] EMBL BX623530 [TTCGCGTCTGGCTCTCCTGACGGTCTAGGCACAGCTCCTGCTCTCTTCACGGTCCAGGCATAGCCGCCGGCGAACGAACTAGAGACATTGTAACTGATTAAATAAGCACTAGTACTGTTTGTGTAACGTTGACTTTTTTGCCACTTGTTTGGCTACACTGGTGGACATAAAAATAGGAAAAAAATTTTGGATGTGGAATAAAGGATGTGCAAGTTCTACCGTGGCCTGCGTTGAGTCCTGACCTCAACCCGATTGAAAATCTGTGGTCAACTCGCAAGCATCAGCTAAAGAACCAGCCTGCACGTTCAGCCGATGATCTATGGACACGCTGCAAGGTTATGTGGAAACGCATACCCAGAAGCGAATGCCGTAAGCTCATCGGCGATATGGCCAAACGCTGTCAGGAAGTGATAGCGATTAACGGTCACCACATTGACCGTTAGAATGTGTTTTCGCTCTGTGGAACACCGCAACACCTCCTCCCAACAACCACTTAAACAGTCCTTTTCAGGGCTACCAAATATTTCTGACAAGAACTATGTCTTTCGGTCACAGAAAAAAGTTCCTATTTTTGTGTCCACCAGTGTACCTTGTGTGGGTGGACCATTTTTTTATTTGATTCCCAAAATGTTACAATGTCTTTCCTTTCACAGTTTTCAATTTGAATCACGCGGTATGCAATTACGAGAGTAAATCT]
consensusID : consensus_4981#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[CCGATTATATACCTCAATGGACCATTTCTTGATTAGAGATACCAAGATAATAATTTTACAATCACTACAAGATTGTCACGCGGATTTTATCCATCTGGAAGATGAATTATATCGATGAATCTAGCAAAACGTAAAAATGACGCCAATTAATATGCTTAACATATCATAACTGCGAATTGTATCGATAATCGGCAAGCAAATGGGGTGCTTGAATTGCACAGCGCTGGCAAATCCTATGTATCAAAATCGTCTGCATTGTTGGTTGTATTGTACTGCGGATGAATGAAGATCTTTTCGAAAAAGTTCTTCAACTAGAAATTATTAAATCAATTTAATATCTATTACCTCTCCTACCTACACAATTCTATATCAACGCTTCAGTTGGCCCTGGAAGCATGCTGAACTGGTCTCAAATTCACTCGTTCATTTCATATCCTGCTGGAGTACGAAGAATGTCGTTCGAGTTGCCTCACATTTTTTACTATTCCACAATCAATTTCAGCACGCTGTTCATTGTCTACAGACAGAAGGGTTGCACGTACACCTGTGTGCATAAAAATAGTAACTGCTTAAGAATCGACCACAGATTTTCTATCGGGTTGAGGTCAGGACTCAACGCAG]
[+] EMBL BM648220 [CCGATTATATACCTCAATGGACCATTTCTTGATTAGAGATACCAAGATAATAATTTTACAATCACTACAAGATTGTCACGCGGATTTTATCCATCTGGAAGATGAATTATATCGATGAATCTAGCAAAACGTAAAAATGACGCCAATTAATATGCTTAACATATCATAACTGCGAATTGTATCGATAATCGGCAAGCAAATGGGGTGCTTGAATTGCACAGCGCTGGCAAATCCTATGTATCAAAATCGTCTGCATTGTTGGTTGTATTGTACTGCGGATGAATGAAGATCTTTTCGAAAAAGTTCTTCAACTAGAAATTATTAAATCAATTTAATATCTATTACCTCTCCTACCTACACAATTCTATATCAACGCTTCAGTTGGCCCTGGAAGCATGCTGAACTGGTCTCAAATTCACTCGTTCATTTCATATCCTGCTGGAGTACGAAGAATGTCGTTCGAGTTGCCTCACATTTTTTACTATTCCACAATCAATTTCAGCACGCTGTTCATTGTCTACAGACAGAAGGGTTGCACGTACACCTGTGTGCATAAAAATAGTAACTGCTTAAGAATCGACCACAGATTTTCTATCGGGTTGAGGTCAGGACTCAACGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4981#0 --CGCGTCTGGCTCTCCTGACGGTCTAGGCACAGCTCCTGCTCTCTTCACGGTCCAGGCA 58
consensus_4981#1 TTCGCGTCTGGCTCTCCTGACGGTCTAGGCACAGCTCCTGCTCTCTTCACGGTCCAGGCA 60
consensus_4981#2 ------------------------------------------------------------
consensus_4981#0 TAGCCGCCGGCGAACGAATTAGAGACATTGTAACCGATTAGATAAGCACTAGTACTATTT 118
consensus_4981#1 TAGCCGCCGGCGAACGAACTAGAGACATTGTAACTGATTAAATAAGCACTAGTACTGTTT 120
consensus_4981#2 --------------CCGATTATATACCTC--AATGGACCATTTCTTGATTAGAGATACCA 44
* * ** * ** * ** ** * * * *** *
consensus_4981#0 GTGTAACGTTCACTTTTTTGCCACTTGATTC-CCAAAATGTTACA-ATATCTTTCCTTTC 176
consensus_4981#1 GTGTAACGTTGACTTTTTTGCCACTTGTTTGGCTACACTGGTGGACATAAAAATAGGAAA 180
consensus_4981#2 AGATAATAATTTTACAATCACTACAAGATTG-TCACGCGGATTTT-ATCCATCTGGAAGA 102
*** * * * ** * ** * * * ** *
consensus_4981#0 ACAGTTTTCAATTTGAATCACGCGGTATGCAATTACGAGAGTAAATCTAGTTTA--CTGG 234
consensus_4981#1 AAAATTTTGGATGTGGAATAAAGGATGTGCAAGTTCTACCGTGGCCTGCGTTGAGTCCTG 240
consensus_4981#2 TGAATTATATCGATGAATCTAGCAAAACGTAAAAATGACGCCAATTAATATGCTTAACAT 162
* ** * ** * * ** * *
consensus_4981#0 AAGTAAGTTTTCGTGTGTCTAAGTTGGTAACATGCAAGTGCTCGAGCGTGTGCCTATTGA 294
consensus_4981#1 ACCTCAACCCGATTGAAAATCTGTGGTCAACTCGCAAGCATCAGCTAAAGAACC----AG 296
consensus_4981#2 ATCATAACTGCGAATTGTATCGATAATCGGCAAGCAAATGG-GGTGCTTGAATTGCACAG 221
* * * * * **** * *
consensus_4981#0 CGTGTGCTCGCATTGGGTGCTCGAATTAGGGTGCTCGACGGATTTCAATTGGCGGTTGAT 354
consensus_4981#1 CCTGCACGTTCAGCCGATGATCTAT---GGACACGCTGCAAGGTT-ATGTGGAAACGCAT 352
consensus_4981#2 CGCTGGCAAATCCTATGTA-TCAAAATCGTCTGCATTGTTGGTTGTATTGTACTGCGGAT 280
* * * ** * * * * * **
consensus_4981#0 GTCAGCTCCCAACTGTGGTAAGGCCAT-GACATGGTCGCCACACACTTTTTGTTCCGTGT 413
consensus_4981#1 ACCCAGAAGCGAATGCCGTAAGCTCATCGGCGATATGGCCAAACGCTGTCAG----GAAG 408
consensus_4981#2 GAATGAAGATCTTTTCGAAAAAGTTCT-------TCAACTAGAAATTATTAAATC-AATT 332
* ** * * * * * *
consensus_4981#0 GGGTTTTGTGTACCGGAATGGCGAAGCGTTTTTGTTGTTTGTACCAATACCCGGTC-GGT 472
consensus_4981#1 TGATAGCGATTAACGGTC------ACCACATTGACCGTTAGAATGTGTTTTCGCTC-TGT 461
consensus_4981#2 TAATATCTATTACCTCTCCTACCTACACAATTCTATATCAACGCTTCAGTTGGCCCTGGA 392
* ** * * ** * * * *
consensus_4981#0 TTTCTCTTGTATGAAGCACACATTGTTTAACACACGGCCTTTTTTCGTCCGGACCATGAA 532
consensus_4981#1 GGAACACCGCA-ACACCTCCTCCCAACAACCACTTAAACAGTCCTTTTCAGGGCTACCAA 520
consensus_4981#2 AGCATGCTGAACTGGTCTCAAATTCACT--CGTTCATTTCATATCCTGCTGGAGTACGAA 450
* * * * * * * ** * **
consensus_4981#0 TGACTTCT--TGATTATCGCAGGTCTGCATCCTCTACCAAAGTTCTGCTCGAGACGCACT 590
consensus_4981#1 ATATTTCTGACAAGAACTATGTCTTTCGGTCACAGAAAAAAGTTCCTATTTTTGTGTCCA 580
consensus_4981#2 GAATGTCGTTCGAGTTGCCTCACATTTTTTACTATTCCACAATCAATTTCAGCACGC--- 507
* ** * * * * * * * *
consensus_4981#0 TTCACTTGTTACGTGTCGTCTCGTACATGAAGATTACATGCAATCTCTTTGGT-TTATGA 649
consensus_4981#1 CCAGTGTACCTTGTGTGG----GTGGACCATTTTTTTATTTGATTCCCAAAATGTTACAA 636
consensus_4981#2 --TGTTCATTGTCTACAG------ACAGAAGGGTTGCACGTACACCTGTGTGCATAAAAA 559
* * * * ** * * * *
consensus_4981#0 TAAGTTATACCCTGCAAATCGGTTGTAGCACCCAAATCAGTAAGTAAGTGAGTTAGTAAG 709
consensus_4981#1 T--GTCTTTCCTTTCA---CAGTTTTCA-ATTTGAATCACGCGGTATGCAATTACGAGAG 690
consensus_4981#2 TA-GTAACTGCTTAAGAATCGACCACAGATTTTCTATCGGGTTGAGGTCAGGACTCAACG 618
* ** * * * *** * *
consensus_4981#0 TAAGTAAGTAATTGAAATCAAAACTAAAGGAAAACACGCAAAACTGTAATACAACAAAAC 769
consensus_4981#1 TAAATCT----------------------------------------------------- 697
consensus_4981#2 CAG--------------------------------------------------------- 621
*
consensus_4981#0 CGGTGTACACACGAACTCCATATGAAACATTGCTTCTTCTTCTTCTTCGCCGTGGCACAT 829
consensus_4981#1 ------------------------------------------------------------
consensus_4981#2 ------------------------------------------------------------
consensus_4981#0 GCGCGCGTGCGGCTAGAATACTCCGCCTATACAACGCAATGAGCAATGTAACATGTAGTA 889
consensus_4981#1 ------------------------------------------------------------
consensus_4981#2 ------------------------------------------------------------
consensus_4981#0 GTTAATTGTACTAAGCGCATT 910
consensus_4981#1 ---------------------
consensus_4981#2 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||