These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 856 fasta sequence [CCGGGAAACGAATTGCTGGGCGAAGAATCGATAGCATAAATAGGTTCTGTACCGTAAAAAGTGTTGTAATCATAAGAACAGACAATTAAACCCTATTGTAAGGCGAAAAACATAAGGCACGAACTAATGGGAAACGATCAACATCATACAAAGAGCAGGAAAGCATCAAGGGAGTGGAAGTGACCGAACCAACGGACAGAAAGAACCGTTGACTGGCTGTTAAATGTTCATTTCAATCTGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATACGCAGCAGCAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGTTAAGAATGAGCGATAGAGAGAGACAGAGAGAGAGAGAGAGAAAAAGTAACAATGAACAACAATGATCACCGCTTTGTAGGGATTTAGTAAAGCTATCAAATATAACAAATTTGACAAAATTGTGGTCATGCTAAGAAAGGGGGAAAAAGGAAGCACACAATTTACGCTATAAAGACACACCAGAACACACGAATTCCCCCACACCGGCAAACAATTCTAAACAAAAATCCTAGCCTTCATTTTCCGGTCTTCTTGGCGTGACAACAGTGTGCAGGTTAAAACAAAAAGTTCAATAGGAAATTTCGTTTATGTAGTTGGAAAGTACATAAGAGTGTGCATAGTGAAAAGCGCTTTAATACACCGGTTCAAATGAAGCGGAGTAATAAAAAAAGAAGCAAAACACGAACGATAGCAAGTAAAAGCGAATGCAAGAAACTATCAAAATACACTCACGCAAACACACACAGAAACACGCAGAAAGAGAAGGTGAAAGGAGAAGTAGAGGTTAGA] [+] EMBL BM591279 [CCGGGAAACGAATTGCTGGGCGAAGAATCGATAGCATAAATAGGTTCTGTACCGTAAAAAGTGTTGTAATCATAAGAACAGACAATTAAACCCTATTGTAAGGCGAAAAACATAAGGCACGAACTAATGGGAAACGATCAACATCATACAAAGAGCAGGAAAGCATCAAGGGAGTGGAAGTGACCGAACCAACGGACAGAAAGAACCGTTGACTGGCTGTTAAATGTTCATTTCAATCTGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATACGCAGCAGCAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGTTAAGAATGAGCGATAGAGAGAGACAGAGAGAGAGAGAGAGAAAAAGTAACAATGAACAACAATGATCACCGCTTTGTAGGGATTTAGTAAAGCTATCAAATATAACAAATTTGACAAAATTGTGGTCATGCTAAGAAAGGGGGAAAAAGGAAGCACACAATTTACGCTATAAAGACACACCAGAACACACGAATTCCCCCACACCGGCAAACAATTCTAAACAAAAATCCTAGCCTTCATTTTCCGGTCTTCTTGGCGTGACAACAGTGTGCAGGTTAAAACAAAAAGTTCAATAGGAAATTTCGTTTATGTAGTTGGAAAGTACATAAGAGTGTGC ] [+] EMBL BM620395 [ ccgGTTAAATGTTCATTTCAATCTGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATACGCAGCAGCAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGTTAAGAATGAGCGATAGAGAGAGACAGAGAGAGAGAGAGAGAAAAAGTAACAATGAACAACAATGATCACCGCTTTGTAGGGATTTAGTAAAGCTATCAAATATAACAAATTTGACAAAATTGTGGTCATGCTAAGAAAGGGGGAAAAAGGAAGCACACAATTTACGCTATAAAGACACACCAGAACACACGAATTCCCCCACACCGGCAAACAATTCTAAACAAAAATCCTAGCCTTCATTTTCCGGTCTTCTTGGCGTGACAACAGTGTGCAGGTTAAAACAAAAAGTTCAATAGGAAATTTCGTTTATGTAGTTGGAAAGTACATAAGAGTGTGCATAGTGAAAAGCGCTTTAATACACCGGTTCAAATGAAGCGGAGTAATAAAAAAAGAAGCAAAACACGAACGATAGCAAGTAAAAGCGAATGCAAGAAACTATCAAAATACACTCACGCAAACACACACAGAAACACGCAGAAAGAGAAGGTGAAAGGAGAAGTAGAGGTTAGA] consensusID : consensus_4984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [CCGGCGAAGAATCGATAGCATAAATAAGTTCTGTCCCGTAAAAAGTGTCGTAATCACAAGAACAGACAATTAAACCCTATCGTAAGGCGAAAAACATAAGGCACGAACTAATGGGAAACGATCAACATCATAGAAAGAGTAGGAAAGCATCAAAGGGTTGGAGGTGACCGAACCAACGGGCAGAAAAAAAACGTTGACTGGCTGTTAAATGTTCATTTAAATCTGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATACGCAGCAGCACCAGGAGCAACAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGTTAAGAATGAGCGATAGAGAGAGAGAG] [+] EMBL BM624618 [CCGGCGAAGAATCGATAGCATAAATAAGTTCTGTCCCGTAAAAAGTGTCGTAATCACAAGAACAGACAATTAAACCCTATCGTAAGGCGAAAAACATAAGGCACGAACTAATGGGAAACGATCAACATCATAGAAAGAGTAGGAAAGCATCAAAGGGTTGGAGGTGACCGAACCAACGGGCAGAAAAAAAACGTTGACTGGCTGTTAAATGTTCATTTAAATCTGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATACGCAGCAGCACCAGGAGCAACAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGTTAAGAATGAGCGATAGAGAGAGAGAG] consensusID : consensus_4984#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [TTCAATAGGAAATTCCGTTTATGTAGGGGAAAGTACATAAGAGTGTGCATAGTGAAAAGCGCTTTAATACAAAGAAGCAAAACACGAACGATAGCAAGTAAAAGCGAATGCAAGAAACTATCAAAATACACTCACGCAAACACACACAGAAACACGCAAAAAGAGAAGGTGAAAGGAGAAGGAGAGGTTAGATTTAGAAGCGCAGAATTAGAATTGGGTAAAAATCGGTCAGAAATTATGATTTTTTATTATTTCTGTCTGTGTGACACAGAGAGAGAGAAGAAATAACGTTTTGTAAATATTATTGTACGGTAAAAGAAAGAAAACAAG] [-] EMBL AGA282705 [TTCAATAGGAAATTCCGTTTATGTAGGGGAAAGTACATAAGAGTGTGCATAGTGAAAAGCGCTTTAATACAAAGAAGCAAAACACGAACGATAGCAAGTAAAAGCGAATGCAAGAAACTATCAAAATACACTCACGCAAACACACACAGAAACACGCAAAAAGAGAAGGTGAAAGGAGAAGGAGAGGTTAGATTTAGAAGCGCAGAATTAGAATTGGGTAAAAATCGGTCAGAAATTATGATTTTTTATTATTTCTGTCTGTGTGACACAGAGAGAGAGAAGAAATAACGTTTTGTAAATATTATTGTACGGTAAAAGAAAGAAAACAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4984#0 CCGGGAAACGAATTGCTGGGCGAAGAATCGATAGCATAAATAGGTTCTGTACCGTAAAAA 60 consensus_4984#1 ----------------CCGGCGAAGAATCGATAGCATAAATAAGTTCTGTCCCGTAAAAA 44 consensus_4984#2 --------------------------------TTCAATAGGAAATTCCGT-TTATGTAGG 27 ** * * *** ** * * consensus_4984#0 GTGTTGTAATCATAAGAACAGACAATTAAACCCTATTGTAAGGCGAAAAACATAAGGCAC 120 consensus_4984#1 GTGTCGTAATCACAAGAACAGACAATTAAACCCTATCGTAAGGCGAAAAACATAAGGCAC 104 consensus_4984#2 GGAAAGTACATAAGAGTGTGCATAGTGAAAAGC-GCTTTAATACAAAGAA-GCAAAACAC 85 * *** * ** * * * *** * *** * ** ** ** *** consensus_4984#0 GAACTAATGGGAAACGATCAACATCATACAAAGAGCAGGAAAGCATCAAGGGAGTGGAAG 180 consensus_4984#1 GAACTAATGGGAAACGATCAACATCATAGAAAGAGTAGGAAAGCATCAAAGGGTTGGAGG 164 consensus_4984#2 GAACGATAGCAAGTAAAAGCGAATGCAAGAAACTATCAAAATACACTCA-----CGCAAA 140 **** * * * * ** * *** ** ** * * * consensus_4984#0 TGACCGAACCAACGGACAGAAAGAAC-CGTTGACTGGCTGTTAAATGTTC-ATTTCAATC 238 consensus_4984#1 TGACCGAACCAACGGGCAGAAAAAAAACGTTGACTGGCTGTTAAATGTTC-ATTTAAATC 223 consensus_4984#2 CACACACAGAAACACGCAAAAAGAGAAGGTGAAAGGAGAAGGAGAGGTTAGATTTAGAAG 200 * * *** ** *** * ** * * * * *** **** * consensus_4984#0 TGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATAC 298 consensus_4984#1 TGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATAC 283 consensus_4984#2 CGCAGAATTAGAATTGGGTAAAAATCGGTCAGAAATTATGATTTTTTATTATTTCTGTCT 260 * * * * * ** ***** *** * **** **** * consensus_4984#0 GCAGCAGCA------------GTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGT 346 consensus_4984#1 GCAGCAGCACCAGGAGCAACAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGT 343 consensus_4984#2 GT-GTGACAC--AGAGAGAGAGAAGAAATAAC-GTTTTGTAAATATTATTGTACGGTAAA 316 * * ** * * * * * * * ** * * ** * * consensus_4984#0 TAAGAATGAGCGATAGAGAGAGACAGAGAGAGAGAGAGAGAAAAAGTAACAATGAACAAC 406 consensus_4984#1 TAAGAATGAGCGATAGAGAGAGAGAG---------------------------------- 369 consensus_4984#2 AGAAAGAAAACAAG---------------------------------------------- 330 * * * * * consensus_4984#0 AATGATCACCGCTTTGTAGGGATTTAGTAAAGCTATCAAATATAACAAATTTGACAAAAT 466 consensus_4984#1 ------------------------------------------------------------ consensus_4984#2 ------------------------------------------------------------ consensus_4984#0 TGTGGTCATGCTAAGAAAGGGGGAAAAAGGAAGCACACAATTTACGCTATAAAGACACAC 526 consensus_4984#1 ------------------------------------------------------------ consensus_4984#2 ------------------------------------------------------------ consensus_4984#0 CAGAACACACGAATTCCCCCACACCGGCAAACAATTCTAAACAAAAATCCTAGCCTTCAT 586 consensus_4984#1 ------------------------------------------------------------ consensus_4984#2 ------------------------------------------------------------ consensus_4984#0 TTTCCGGTCTTCTTGGCGTGACAACAGTGTGCAGGTTAAAACAAAAAGTTCAATAGGAAA 646 consensus_4984#1 ------------------------------------------------------------ consensus_4984#2 ------------------------------------------------------------ consensus_4984#0 TTTCGTTTATGTAGTTGGAAAGTACATAAGAGTGTGCATAGTGAAAAGCGCTTTAATACA 706 consensus_4984#1 ------------------------------------------------------------ consensus_4984#2 ------------------------------------------------------------ consensus_4984#0 CCGGTTCAAATGAAGCGGAGTAATAAAAAAAGAAGCAAAACACGAACGATAGCAAGTAAA 766 consensus_4984#1 ------------------------------------------------------------ consensus_4984#2 ------------------------------------------------------------ consensus_4984#0 AGCGAATGCAAGAAACTATCAAAATACACTCACGCAAACACACACAGAAACACGCAGAAA 826 consensus_4984#1 ------------------------------------------------------------ consensus_4984#2 ------------------------------------------------------------ consensus_4984#0 GAGAAGGTGAAAGGAGAAGTAGAGGTTAGA 856 consensus_4984#1 ------------------------------ consensus_4984#2 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||