These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 886 fasta sequence [GGCAGAATCGGCACGNNTGATCCGATGGAGTGATTTGACGCAGCAATACGAAGCCCGAAGCGCACCTGAACACACCACCCGCGCCAGTTAATGTCGATGGCTGGCATTTTAGGGGGCGAAGTAAAGGAACCTTCCCGCGACGACATGTTCGACAGAGTAAGCATTNAAAGCAACTTACAGGTNGCTTGAAAGGTTGGGAGCTTTGGCNAAAATTGCTTTCCGGGGAAATCCTTGTGGGAACCGGGGTGGTTTTTCTTGGGGCAACAGGGAACCTGGCCNAACACACCGGGGGCAGGCGAACGGTTTCGCCACGGTTGAAAAGAAAAGTTTNNCCTGGGGTTCGGACAGGGATTCTTGAAAGAAACCGGAAGCACGTTCAGGGGTTAACGGTTGGATTGGGAACGGAAGGGCGAACAAGCGCCGATTCTTGCGCCGCCGAAAGGTTTCCCCNGNAACAGCCAGATTTCCCGGGGAAGAAACGCAATTTCCTTACCTTTGGGTTAAAATGCCAAACCAAGCAACCCGGACGGGGTNTACACNGNGTTGGGGCAGACCCCAGAGNTCCNTCCCGAGGATACCTTTGGTGTNAACAGCTCTCTCTAGGTGTTGGNGNTCTTTGTGCCCACCAGGGTTNTTCAAACATTTTGGTGTTTTGGCGCGNCTTAACAACGCGGGGGTGTTCTCCCTTCTTTGTGCCCACGAGGTGTGAGNCAGCACACCGGGNAACTNNATNTGGGGNGGCCCCCACNGAGAACGTTTAAGACCGGTCTTTTCTCCGGAAGAGNAACCACCGAGCTGGTGTGGCGTTTTTTATTCTACCCCGGGGGGGGAAGAAAAACCCCGGACAGTGTGANACNTNCTTCAGGGGTNAGGTTTATGTGCGCGC] [+] EMBL BX467875 [GGCAGAATCGGCACGNNTGATCCGATGGAGTGATTTGACGCAGCAATACGAAGCCCGAAGCGCACCTGAACACACCACCCGCGCCAGTTAATGTCGATGGCTGGCATTTTAGGGGGCGAAGTAAAGGAACCTTCCCGCGACGACATGTTCGACAGAGTAAGCATTNAAAGCAACTTACAGGTNGCTTGAAAGGTTGGGAGCTTTGGCNAAAATTGCTTTCCGGGGAAATCCTTGTGGGAACCGGGGTGGTTTTTCTTGGGGCAACAGGGAACCTGGCCNAACACACCGGGGGCAGGCGAACGGTTTCGCCACGGTTGAAAAGAAAAGTTTNNCCTGGGGTTCGGACAGGGATTCTTGAAAGAAACCGGAAGCACGTTCAGGGGTTAACGGTTGGATTGGGAACGGAAGGGCGAACAAGCGCCGATTCTTGCGCCGCCGAAAGGTTTCCCCNGNAACAGCCAGATTTCCCGGGGAAGAAACGCAATTTCCTTACCTTTGGGTTAAAATGCCAAACCAAGCAACCCGGACGGGGTNTACACNGNGTTGGGGCAGACCCCAGAGNTCCNTCCCGAGGATACCTTTGGTGTNAACAGCTCTCTCTAGGTGTTGGNGNTCTTTGTGCCCACCAGGGTTNTTCAAACATTTTGGTGTTTTGGCGCGNCTTAACAACGCGGGGGTGTTCTCCCTTCTTTGTGCCCACGAGGTGTGAGNCAGCACACCGGGNAACTNNATNTGGGGNGGCCCCCACNGAGAACGTTTAAGACCGGTCTTTTCTCCGGAAGAGNAACCACCGAGCTGGTGTGGCGTTTTTTATTCTACCCCGGGGGGGGAAGAAAAACCCCGGACAGTGTGANACNTNCTTCAGGGGTNAGGTTTATGTGCGCGC] consensusID : consensus_4995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 308 fasta sequence [CCACCCGCGCCAGTTAATGTCGATGCTGCCATTTTAGGGGGCGAGTAAAGGACCCTTCCGCGACGACATGTTCGACAATAACATCAACCACTACGTGCTGAAGGTGGAGCTGGCCAAATGCTTCGGCAATCTGGGGACGGTGTTTCTGGCACAGCACCTGCCCACCCGGCAGCACGTCGCGGTGAAGAAGTTCCTGGTCGAGGATCTGAAGAACGACATCAGCTACGTGATGGACGAGGCGAAGCATCTGCGCGAGTTCGACCATCCGAACATCCTCTGCTACCACACCGCGTTCGTGCACCATCTCC] [+] EMBL AGA285513 [CCACCCGCGCCAGTTAATGTCGATGCTGCCATTTTAGGGGGCGAGTAAAGGACCCTTCCGCGACGACATGTTCGACAATAACATCAACCACTACGTGCTGAAGGTGGAGCTGGCCAAATGCTTCGGCAATCTGGGGACGGTGTTTCTGGCACAGCACCTGCCCACCCGGCAGCACGTCGCGGTGAAGAAGTTCCTGGTCGAGGATCTGAAGAACGACATCAGCTACGTGATGGACGAGGCGAAGCATCTGCGCGAGTTCGACCATCCGAACATCCTCTGCTACCACACCGCGTTCGTGCACCATCTCC] [+] EMBL AGA284890 [CCACCCGCGCCAGTTAATGTCGATGCTGCCATTTTAGGGGGCGAGTAAAGGACCCTTCCGCGACGACATGTTCGACAATAACATCAACCACTACGTGCTGAAGGTGGAGCTGGCCAAATGCTTCGGCAATCTGGGGACGGTGTTTCTGGCACAGCACCTGCCCACCCGGCAGCACGTCGCGGTGAAGAAGTTCCTGGTCGAGGATCTGAAGAACGACATCAGCTACGTGATGGAC ] consensusID : consensus_4995#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence [GGCACNHNBCGAAGCCCGAAGCGCACCGAACACACCACCCGCGCCAGTTWAATGTCGATGCTGCCATTTTGGGGGCGTAGTAAAGGACCCTCGCCGACGAACGAACATTGTTVCGAACAATAAWCATACACACMCATCTGAGCGTGGCTAGAAGGG] [+] EMBL AGA282932 [GGCACNHNBCGAAGCCCGAAGCGCACCGAACACACCACCCGCGCCAGTTWAATGTCGATGCTGCCATTTTGGGGGCGTAGTAAAGGACCCTCGCCGACGAACGAACATTGTTVCGAACAATAAWCATACACACMCATCTGAGCGTGGCTAGAAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4995#0 GGCAGAATCGGCACGNNTGATCCGATGGAGTGATTTGACGCAGCAATACGAAGCCCGAAG 60 consensus_4995#2 ---------------------------------------GGCACNHNBCGAAGCCCGAAG 21 consensus_4995#1 ------------------------------------------------------------ consensus_4995#0 CGCACCTGAACACACCACCCGCGCCAGTTAA-TGTCGATGGCTGGCATTTTAGGGGGCGA 119 consensus_4995#2 CGCACC-GAACACACCACCCGCGCCAGTTWAATGTCGATG-CTGCCATTTT-GGGGGCGT 78 consensus_4995#1 --------------CCACCCGCGCCAGTTAA-TGTCGATG-CTGCCATTTTAGGGGGCG- 43 *************** * ******** *** ****** ******* consensus_4995#0 AGTAAAGGAACCTTCCCG-CGAC--GACAT-GTTCGACAGAGTAAGCATTNAAAGCAACT 175 consensus_4995#2 AGTAAAGGACCCTCGCCGACGAACGAACATTGTTVCGAACAATAAWCATACACACMCATC 138 consensus_4995#1 AGTAAAGGACCCTTCCG--CGAC--GACAT-GTTCGACAATAACATCAACCACTACGTGC 98 ********* *** * *** **** *** * * ** * consensus_4995#0 TACAGGTNG--CTTG---AAAGGTTGGGAGCTTTGGCNAAAATTGCTTTCCGGGGAAATC 230 consensus_4995#2 TGAGCGTGG--CTAG---AAGGG------------------------------------- 156 consensus_4995#1 TGAAGGTGGAGCTGGCCAAATGCTTCGGCAATCTGGGGACGGT--GTTTCTGGCACAGCA 156 * ** * ** * ** * consensus_4995#0 CTTGTGGGAACCGGGGTGGTTTTTCTTGGGGCAACAGGGAACCTGGCCNAACACACCGGG 290 consensus_4995#2 ------------------------------------------------------------ consensus_4995#1 CCTGCCCACCCGGCAGCA-----CGTCGCGGTGAAGAAGTTCCTGGTCGAGGAT--CTGA 209 consensus_4995#0 GGCAGGCGAACGGTTTCGCCACGGTTGAAAAGAAAAGTTTNNCCTGGGGTTCGGACAGGG 350 consensus_4995#2 ------------------------------------------------------------ consensus_4995#1 AGAACGACATCAGCTACGTGATGGACGAGGCGAAGCATCTGCGC--GAGTTCGACCATCC 267 consensus_4995#0 ATTCTTGAAAGAAACCGGAAGCACGTTCAGGGGTTAACGGTTGGATTGGGAACGGAAGGG 410 consensus_4995#2 ------------------------------------------------------------ consensus_4995#1 GAACATCCTCTGCTACCACACCGCGTTCGTGCACCATCTCC------------------- 308 consensus_4995#0 CGAACAAGCGCCGATTCTTGCGCCGCCGAAAGGTTTCCCCNGNAACAGCCAGATTTCCCG 470 consensus_4995#2 ------------------------------------------------------------ consensus_4995#1 ------------------------------------------------------------ consensus_4995#0 GGGAAGAAACGCAATTTCCTTACCTTTGGGTTAAAATGCCAAACCAAGCAACCCGGACGG 530 consensus_4995#2 ------------------------------------------------------------ consensus_4995#1 ------------------------------------------------------------ consensus_4995#0 GGTNTACACNGNGTTGGGGCAGACCCCAGAGNTCCNTCCCGAGGATACCTTTGGTGTNAA 590 consensus_4995#2 ------------------------------------------------------------ consensus_4995#1 ------------------------------------------------------------ consensus_4995#0 CAGCTCTCTCTAGGTGTTGGNGNTCTTTGTGCCCACCAGGGTTNTTCAAACATTTTGGTG 650 consensus_4995#2 ------------------------------------------------------------ consensus_4995#1 ------------------------------------------------------------ consensus_4995#0 TTTTGGCGCGNCTTAACAACGCGGGGGTGTTCTCCCTTCTTTGTGCCCACGAGGTGTGAG 710 consensus_4995#2 ------------------------------------------------------------ consensus_4995#1 ------------------------------------------------------------ consensus_4995#0 NCAGCACACCGGGNAACTNNATNTGGGGNGGCCCCCACNGAGAACGTTTAAGACCGGTCT 770 consensus_4995#2 ------------------------------------------------------------ consensus_4995#1 ------------------------------------------------------------ consensus_4995#0 TTTCTCCGGAAGAGNAACCACCGAGCTGGTGTGGCGTTTTTTATTCTACCCCGGGGGGGG 830 consensus_4995#2 ------------------------------------------------------------ consensus_4995#1 ------------------------------------------------------------ consensus_4995#0 AAGAAAAACCCCGGACAGTGTGANACNTNCTTCAGGGGTNAGGTTTATGTGCGCGC 886 consensus_4995#2 -------------------------------------------------------- consensus_4995#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||