These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5002#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1048 fasta sequence [ATTAATCAGTTCTGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGTCGATCTCCATGGATTCAAAAAGGGCCGAGTTGTAGTACTGTGCACTGCTGAGCTGAACCATCGCCTCTGCTGCTTGCTGGCTGTCGTCCTCGCTTTGCGGAGGCATCATACTGGAGGTCGTGTTCGACTGCTCCAGCGTTACAGAGACGCCTTCATTATCGCTTGTGCCCACTTCCTCAAACTCTTCATCATCCGTTGAATATTGATGACCTGCTCGTTTTTGTGCAGTGGCCAACCGAATGGGTTGGAAGGTGGATTGGTTTCGTGCGTCATAGCCAAAGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAACCCGGCCGAAATGGCACCGCCACCGCCGTACTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACCGAGCTTCGGCCCAGGGCGGTAATATGAAGGAATGGCATTCGGTCGAACGATTGGGAAAGGCATTGCCGACTCGGAATAGGCCGTACCGTACGGTCGGCGGGCAAAATCATCGTCCTTGGCGGTAGGAATGT] [+] EMBL CNS08DUB [ATTAATCAGTTCTGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGTCGATCTCCATGGATTCAAAAAGGGCCGAGTTGTAGTACTGTGCACTGCTGAGCTGAACCATCGCCTCTGCTGCTTGCTGGCTGTCGTCCTCGCTTTGCGGAGGCATCATACTGGAGGTCGTGTTCGACTGCTCCAGCGTTACAGAGACGCCTTCATTATCGCTTGTGCCCACTTCCTCAAACTCTTCATCATCCGTTGAATATTGATGACCTGCTCGTTTTTGTGCAGTGGCCAACCGAATGGGTTGGAAGGTGGATTGGTTTCGTGCGTCATAGCCAAAGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAACCCGGCCGAAATGGCACCGCCACCGCCGTACTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACC ] [-] EMBL CNS08DUA [ ggggggGCAGTGGCCAACCGAATGGGTTGGAAGGTGGATTGGTTTCGTGCGTCATAGCCAAAGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAACCCGGCCGAAATGGCACCGCCACCGCCTTTCTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACCGAGCTTCGGCCCAGGGCGGTAATATGAAGGAATGGCATTCGGTCGAACGATTGGGAAAGGCATTGCCGACTCGGAATAGGCCGTACCGTACGGTCGGCGGGCAAAATCATCGTCCTTGGCGGTAGGAATGT] [-] EMBL CNS08WR8 [ ACTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACCGAGCTTCGGCCCAGGGCGGTGATATGAAGGAATGGCATTCGGTCGAACGATTGGGAAAGGCATTGCCGACTCGGAATAGGCCGTAC ] consensusID : consensus_5002#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [TATTTCTGTACTTCACTATATATCCACCTAAACATAACATATCCGCATTTAGAACCAAAGATCACCACCCTCATCGTTATCATCGTTATCGTCTCGCACCTCATCCGACCGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGGCGATCTCCATGGATTCATCCTGGGCCGAGTTGTAGTACTGTGCAC] [+] EMBL CNS08WR9 [TATTTCTGTACTTCACTATATATCCACCTAAACATAACATATCCGCATTTAGAACCAAAGATCACCACCCTCATCGTTATCATCGTTATCGTCTCGCACCTCATCCGACCGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGGCGATCTCCATGGATTCATCCTGGGCCGAGTTGTAGTACTGTGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5002#0 ------------------------------------------------------------ consensus_5002#1 TATTTCTGTACTTCACTATATATCCACCTAAACATAACATATCCGCATTTAGAACCAAAG 60 consensus_5002#0 --------------------------------------ATTAATCAGTTCTGCAAATTGG 22 consensus_5002#1 ATCACCACCCTCATCGTTATCATCGTTATCGTCTCGCACCTCATCCGACC-GCAAATTGG 119 * *** * * ********* consensus_5002#0 TCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAA 82 consensus_5002#1 TCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAA 179 ************************************************************ consensus_5002#0 GGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACT 142 consensus_5002#1 GGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACT 239 ************************************************************ consensus_5002#0 GAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAG 202 consensus_5002#1 GAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAG 299 ************************************************************ consensus_5002#0 AGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAA 262 consensus_5002#1 AGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAA 359 ************************************************************ consensus_5002#0 TACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAAT 322 consensus_5002#1 TACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAAT 419 ************************************************************ consensus_5002#0 CACTCGGATCGTAGTTGGGGTCGATCTCCATGGATTCAAAAAGGGCCGAGTTGTAGTACT 382 consensus_5002#1 CACTCGGATCGTAGTTGGGGGCGATCTCCATGGATTCATCCTGGGCCGAGTTGTAGTACT 479 ******************** ***************** ****************** consensus_5002#0 GTGCACTGCTGAGCTGAACCATCGCCTCTGCTGCTTGCTGGCTGTCGTCCTCGCTTTGCG 442 consensus_5002#1 GTGCAC------------------------------------------------------ 485 ****** consensus_5002#0 GAGGCATCATACTGGAGGTCGTGTTCGACTGCTCCAGCGTTACAGAGACGCCTTCATTAT 502 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 CGCTTGTGCCCACTTCCTCAAACTCTTCATCATCCGTTGAATATTGATGACCTGCTCGTT 562 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 TTTGTGCAGTGGCCAACCGAATGGGTTGGAAGGTGGATTGGTTTCGTGCGTCATAGCCAA 622 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 AGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAACCCGGCCGAAATGGCACCGCCAC 682 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 CGCCGTACTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCA 742 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 TTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTA 802 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 CGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTG 862 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 CACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACCGAGCT 922 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 TCGGCCCAGGGCGGTAATATGAAGGAATGGCATTCGGTCGAACGATTGGGAAAGGCATTG 982 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 CCGACTCGGAATAGGCCGTACCGTACGGTCGGCGGGCAAAATCATCGTCCTTGGCGGTAG 1042 consensus_5002#1 ------------------------------------------------------------ consensus_5002#0 GAATGT 1048 consensus_5002#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||