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Anopheles gambiae
cluster # 5016 cluster # 5016       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5016#0 length = 1397 sequences # 1  
consensus_5016#1 length = 736 sequences # 3  

consensusID : consensus_5016#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1397
fasta sequence
                              [GCAGAATCCCCGAGGTTATTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATATGTGATTTATTTCCATTTGAAGTGCAACAAATTCTGTTCTGTGTTAACGTATTTCCCGGTGGAACAAAGTGCCAAAAATATGGTGACCTAAAACCTGTGTCAACCACATCCAGGGAATGCAAGACTGGCTGTGAAATGCAAAGGTGCTGTATCTGCTGTTTTTGACATGTTCACTAGCTCTCTCGCCACTGTGGCTCCAACTCACCGCGTGAGACGTGTAGTGGCTTGGGGTTGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTACGCTGATCGTCACTTTTACGCGTATGTTTTTGTTGATTCTTGGGTGGTCAGAAAAAACGGACAGAAGTTCCAAAATGGAAAATGNGCTGGACTGCATCCCCGTACAGTCCTGTGTGATCATTTTTCCTGTGCCCGTGAATTCAACTACAGGTGATCATTTGATCGGTGCTGCTTTGGAGCAGTGGACTCCCCATCGNTACGTTTGTACANTGGGTAATACTTACTNTTCCTTANAAACTTATCTTTACGCAAACGGGAGTGGATCGCGATCCCACAAACGCTGTACACGCTGAACAAAGTTAAGTGCAAACCCGGTCTNTAAGATGATCCGTGATCCTGGACGGTTACAAGCCCGAAGCGCATGTAATCAAGATNTCTCACCAACTNNTCGGCCAAGGTATGATACGGNNATACTGGAGAGACTGNGCCCNGACTAAAGCCCCCCCAGGGAACGACAATTTGGNCAAAATTNCCCACCGGATTGGCCACATTTGAACCCGGTANCCAGAGNCTGCCAAAGGGGAACNACGTCACGGAATTGGGCCAANTGNGAATNCGGCACNGAACATGGAGATNAGCGTGAGANTCATTCACNGTCNNAGAAATGANAAACCGGNATGTTCAANANTCNNTNAAACAAACTGGTTGGCGAGCCACCCAGGAACGTTTGGTCAANTGCTAACCGGAAAAGGGGGCACACCTGGGTCCCACTCCANACCCCNNGGAATTANACAACNAAAACAGCCCGGCGCACATACNAGCAGCGTACCCAACAATTTTTGNATACANACAACCCCACAAAACAGNGGTAGNGACACNACAATANGGTGGGAGCTTCAACAACGCAACANNGTANAACANGTTTNACAAATNGTNAACCAAAACNTGGTGAACGCGNGGCGCAACANCNANCCTGGACGCTCNAACTCACGCAACCCACNCNCACATCGNCNTTCNAGNCCCGGAAGACTCACGCTGTCCCCCCAGCGTCANACCNCTGNGATATCCNNGCATCGCTGCA]

[+] EMBL AL931390             [GCAGAATCCCCGAGGTTATTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATATGTGATTTATTTCCATTTGAAGTGCAACAAATTCTGTTCTGTGTTAACGTATTTCCCGGTGGAACAAAGTGCCAAAAATATGGTGACCTAAAACCTGTGTCAACCACATCCAGGGAATGCAAGACTGGCTGTGAAATGCAAAGGTGCTGTATCTGCTGTTTTTGACATGTTCACTAGCTCTCTCGCCACTGTGGCTCCAACTCACCGCGTGAGACGTGTAGTGGCTTGGGGTTGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTACGCTGATCGTCACTTTTACGCGTATGTTTTTGTTGATTCTTGGGTGGTCAGAAAAAACGGACAGAAGTTCCAAAATGGAAAATGNGCTGGACTGCATCCCCGTACAGTCCTGTGTGATCATTTTTCCTGTGCCCGTGAATTCAACTACAGGTGATCATTTGATCGGTGCTGCTTTGGAGCAGTGGACTCCCCATCGNTACGTTTGTACANTGGGTAATACTTACTNTTCCTTANAAACTTATCTTTACGCAAACGGGAGTGGATCGCGATCCCACAAACGCTGTACACGCTGAACAAAGTTAAGTGCAAACCCGGTCTNTAAGATGATCCGTGATCCTGGACGGTTACAAGCCCGAAGCGCATGTAATCAAGATNTCTCACCAACTNNTCGGCCAAGGTATGATACGGNNATACTGGAGAGACTGNGCCCNGACTAAAGCCCCCCCAGGGAACGACAATTTGGNCAAAATTNCCCACCGGATTGGCCACATTTGAACCCGGTANCCAGAGNCTGCCAAAGGGGAACNACGTCACGGAATTGGGCCAANTGNGAATNCGGCACNGAACATGGAGATNAGCGTGAGANTCATTCACNGTCNNAGAAATGANAAACCGGNATGTTCAANANTCNNTNAAACAAACTGGTTGGCGAGCCACCCAGGAACGTTTGGTCAANTGCTAACCGGAAAAGGGGGCACACCTGGGTCCCACTCCANACCCCNNGGAATTANACAACNAAAACAGCCCGGCGCACATACNAGCAGCGTACCCAACAATTTTTGNATACANACAACCCCACAAAACAGNGGTAGNGACACNACAATANGGTGGGAGCTTCAACAACGCAACANNGTANAACANGTTTNACAAATNGTNAACCAAAACNTGGTGAACGCGNGGCGCAACANCNANCCTGGACGCTCNAACTCACGCAACCCACNCNCACATCGNCNTTCNAGNCCCGGAAGACTCACGCTGTCCCCCCAGCGTCANACCNCTGNGATATCCNNGCATCGCTGCA]


>consensus_5016#0 GCAGAATCCCCGAGGTTATTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGA TGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATATGTGATTTATTTCC ATTTGAAGTGCAACAAATTCTGTTCTGTGTTAACGTATTTCCCGGTGGAACAAAGTGCCA AAAATATGGTGACCTAAAACCTGTGTCAACCACATCCAGGGAATGCAAGACTGGCTGTGA AATGCAAAGGTGCTGTATCTGCTGTTTTTGACATGTTCACTAGCTCTCTCGCCACTGTGG CTCCAACTCACCGCGTGAGACGTGTAGTGGCTTGGGGTTGCTTACTCACCACTCACTCAC CACTCAGCGAGCCGTACGCTGATCGTCACTTTTACGCGTATGTTTTTGTTGATTCTTGGG TGGTCAGAAAAAACGGACAGAAGTTCCAAAATGGAAAATGNGCTGGACTGCATCCCCGTA CAGTCCTGTGTGATCATTTTTCCTGTGCCCGTGAATTCAACTACAGGTGATCATTTGATC GGTGCTGCTTTGGAGCAGTGGACTCCCCATCGNTACGTTTGTACANTGGGTAATACTTAC TNTTCCTTANAAACTTATCTTTACGCAAACGGGAGTGGATCGCGATCCCACAAACGCTGT ACACGCTGAACAAAGTTAAGTGCAAACCCGGTCTNTAAGATGATCCGTGATCCTGGACGG TTACAAGCCCGAAGCGCATGTAATCAAGATNTCTCACCAACTNNTCGGCCAAGGTATGAT ACGGNNATACTGGAGAGACTGNGCCCNGACTAAAGCCCCCCCAGGGAACGACAATTTGGN CAAAATTNCCCACCGGATTGGCCACATTTGAACCCGGTANCCAGAGNCTGCCAAAGGGGA ACNACGTCACGGAATTGGGCCAANTGNGAATNCGGCACNGAACATGGAGATNAGCGTGAG ANTCATTCACNGTCNNAGAAATGANAAACCGGNATGTTCAANANTCNNTNAAACAAACTG GTTGGCGAGCCACCCAGGAACGTTTGGTCAANTGCTAACCGGAAAAGGGGGCACACCTGG GTCCCACTCCANACCCCNNGGAATTANACAACNAAAACAGCCCGGCGCACATACNAGCAG CGTACCCAACAATTTTTGNATACANACAACCCCACAAAACAGNGGTAGNGACACNACAAT ANGGTGGGAGCTTCAACAACGCAACANNGTANAACANGTTTNACAAATNGTNAACCAAAA CNTGGTGAACGCGNGGCGCAACANCNANCCTGGACGCTCNAACTCACGCAACCCACNCNC ACATCGNCNTTCNAGNCCCGGAAGACTCACGCTGTCCCCCCAGCGTCANACCNCTGNGAT ATCCNNGCATCGCTGCA



consensusID : consensus_5016#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 736
fasta sequence
                              [CCGGAAAAAAACGAAGAAGACGCAAGGGGCAAACTCGCATCGCGCTCACTGTGACTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATTGTGATTTATTTCCATTGAAGTGCAACAAATTCGTTCTGTGTTAAGTTTTCCGGGAACAAAGTGCCAAAAAAGGGACCAAAACCGGCCAACCACATCCAGGAAGCAAACGGCGTGAAAGCAAAGGCTGTTCGCGTTTTGACAGTTCACAGCTCTCTCGCCACGGGCTCCAACTCACCGCGTGAGACGTTAGTGGCTTGGGGGGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTCGCGATCGTCACTTTTCGCGTATGTTTTGTTGATTTGGGGGTCAGAAAAAACGGACAGAAGTTCCAAAAGGAAAA-GGCGGACGCATCCCCGTCAGTCCGTGTGATCATTTTCCGTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCGCTTGGAGCAGGGACTCCCCTCGTCGTTGTTTGGTTTACTTCTTTCCCTTTTCTTTCTTTCGCCAACCGGGAGGGATCGCGATCCCACAAACGCTGTCACGCTGAAAAAGTTAGTGCAAACCCGTCTTAAGATGATCCGTGATCCTGGCGGTACAAGCCCGAACGAGAATCAAGATTCTCCCCCTTCGCCCAAGTATGATCG]

[+] EMBL AGA285747            [CCGGAAAAAAACGAAGAAGACGCAAGGGGCAAACTCGCATCGCGCTCACTGTGACTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATTGTGATTTATTTCCATTGAAGTGCAACAAATTCGTTCTGTGTTAAGTTTTCCGGGAACAAAGTGCCAAAAAAGGGACCAAAACCGGCCAACCACATCCAGGAAGCAAACGGCGTGAAAGCAAAGGCTGTTCGCGTTTTGACAGTTCACAGCTCTCTCGCCACGGGCTCCAACTCACCGCGTGAGACGTTAGTGGCTTGGGGGGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTCGCGATCGTCACTTTTCGCGTATGTTTTGTTG                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL AGA283685            [                                                                                                                                                                                                                                                                                                             ACGGGCTCCAACTCACCGCGTGAGACGTGAGTGGCTTGGGGGGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTCGCGATCGTCACTTTTCGCGTATGTTTTGTTGATTTGGGGGTCAGAAAAAACGGACAGAAGTTCCAAAAGGAAAA GGCGGACGCATCCCCGTCAGTCCGTGTGATCATTTTCCGTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCGCTTGGAGCAGGGACTCCCCTCGTCGTTGTTTGGTTTACTTCTTTCCCTTTTCTTTCTTTCGCCAACCGGGAGGGATCGCGATCCCACAAACGCTGTCACGCTGAAAAAGTTAGTGCAAACCCGTCTTAAGATGATCCGTGATCCTGGCGGTACAAGCCCGAACGAGAATCAAGATTCTCCCCCTTCGCCCAAGTATGATCG]
[-] EMBL AGA284440            [                                                                                                                                                                                                                                                                                                                                                                                              GATCGTCACTTTTGGCGTATGTTTTGTTGATTTGGGGGTCAGAAAAAACGGACAGAAGTTCCAAAAGGAAAAGGGCGGACGCATCCCCGTCAGTCCGTGTGATCATTTTCCGTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCGCTTGGAGCAGGGACTCCCCTCGTCGTTGTTTGGTTTACTTCTTTCCTTTTTCTTTCTTTCGCCAACCGGGAGGGATCGCGATCCCACAAACGCTGTCACGCTGAAAAAGTTAGTGCAAACCCGTCTTAAGATGATCCGTGATCCTGGCGGTACAAGCCCGAACGAGAATCAAGATTCTCCCCCTTCGCCCAAGTATGATCG]


>consensus_5016#1 CCGGAAAAAAACGAAGAAGACGCAAGGGGCAAACTCGCATCGCGCTCACTGTGACTCGAA AGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCT ACTACACAAACATTGGTGAATTGTGATTTATTTCCATTGAAGTGCAACAAATTCGTTCTG TGTTAAGTTTTCCGGGAACAAAGTGCCAAAAAAGGGACCAAAACCGGCCAACCACATCCA GGAAGCAAACGGCGTGAAAGCAAAGGCTGTTCGCGTTTTGACAGTTCACAGCTCTCTCGC CACGGGCTCCAACTCACCGCGTGAGACGTTAGTGGCTTGGGGGGCTTACTCACCACTCAC TCACCACTCAGCGAGCCGTCGCGATCGTCACTTTTCGCGTATGTTTTGTTGATTTGGGGG TCAGAAAAAACGGACAGAAGTTCCAAAAGGAAAAGGCGGACGCATCCCCGTCAGTCCGTG TGATCATTTTCCGTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCGCTTGG AGCAGGGACTCCCCTCGTCGTTGTTTGGTTTACTTCTTTCCCTTTTCTTTCTTTCGCCAA CCGGGAGGGATCGCGATCCCACAAACGCTGTCACGCTGAAAAAGTTAGTGCAAACCCGTC TTAAGATGATCCGTGATCCTGGCGGTACAAGCCCGAACGAGAATCAAGATTCTCCCCCTT CGCCCAAGTATGATCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5016#0      ------------------------------------GCAGAATCCCCGAGGTTATTCGAA 24
consensus_5016#1      CCGGAAAAAAACGAAGAAGACGCAAGGGGCAAACTCGCATCGCGCTCACTGTGACTCGAA 60
                                                          ***     * *   ** * *****

consensus_5016#0      AGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCT 84
consensus_5016#1      AGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCT 120
                      ************************************************************

consensus_5016#0      ACTACACAAACATTGGTGAATATGTGATTTATTTCCATTTGAAGTGCAACAAATTCTGTT 144
consensus_5016#1      ACTACACAAACATTGGTGAAT-TGTGATTTATTTCCATT-GAAGTGCAACAAATTC-GTT 177
                      ********************* ***************** **************** ***

consensus_5016#0      CTGTGTTAACGTATTTCCCGGTGGAACAAAGTGCCAAAAATATGGTGACCTAAAACCTGT 204
consensus_5016#1      CTGTGTTAA---GTTTTCCGG--GAACAAAGTGCCAAAAA---AGGGACC-AAAACCGGC 228
                      *********    *** ****  *****************    * **** ****** * 

consensus_5016#0      GTCAACCACATCCAGGGAATGCAAGACTGGCTGTGAAATGCAAAGGTGCTGTATCTGCTG 264
consensus_5016#1      --CAACCACATCCAGGAAGCAAACGGC-----GTGAAA-GCAAAGG--CTGTTCGCG--- 275
                        ************** *    * * *     ****** *******  ****    *   

consensus_5016#0      TTTTTGACATGTTCACTAGCTCTCTCGCCACTGTGGCTCCAACTCACCGCGTGAGACGTG 324
consensus_5016#1      -TTTTGACA-GTTCAC-AGCTCTCTCGCCACGG--GCTCCAACTCACCGCGTGAGACGT- 329
                       ******** ****** ************** *  ************************ 

consensus_5016#0      TAGTGGCTTGGGGTTGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTACGCTGATC 384
consensus_5016#1      TAGTGGCTTGGGGG-GCTTACTCACCACTCACTCACCACTCAGCGAGCCGT-CGC-GATC 386
                      *************  ************************************ *** ****

consensus_5016#0      GTCACTTTTACGCGTATGTTTTTGTTGATTCTTGGGTGGTCAGAAAAAACGGACAGAAGT 444
consensus_5016#1      GTCACTTTT-CGCGTATGTTTT-GTTGATTT---GGGGGTCAGAAAAAACGGACAGAAGT 441
                      ********* ************ *******    ** ***********************

consensus_5016#0      TCCAAAATGGAAAATGNGCTGGACTGCATCCCCGTACAGTCCTGTGTGATCATTTTTCCT 504
consensus_5016#1      TCCAAAA-GGAAAAGGCG---GAC-GCATCCCCGT-CAGTCC-GTGTGATCATTTTCC-- 492
                      ******* ****** * *   *** ********** ****** ************* *  

consensus_5016#0      GTGCCCGTGAATTCAACTACAG-GTGATCATTTGATCGGTGCTGCTTTGGAGCAGTGGAC 563
consensus_5016#1      GTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCG--CTTGGAGCAG-GGAC 549
                      ********************** *******************    ********* ****

consensus_5016#0      TCCCCATCGNTACGTTTGTACANTGGGTAATACTTACTNTTCCTTANAAACTTATCTTTA 623
consensus_5016#1      TCCCC-TCGTCG---TTGT---TTGGTT--TACTT-CTTTCCCTT-----TTCTTTCTTT 594
                      ***** ***      ****    *** *  ***** ** * ****      *  *  ** 

consensus_5016#0      CGCAAACGGGAGTGGATCGCGATCCCACAAACGCTGTACACGCTGAACAAAGTTAAGTGC 683
consensus_5016#1      CGCCAACCGGGAGGGATCGCGATCCCACAAACGCTGT-CACGCTGAA-AAAGTTA-GTGC 651
                      *** *** **   ************************ ********* ******* ****

consensus_5016#0      AAACCCGGTCTNTAAGATGATCCGTGATCCTGGACGGTTACAAGCCCGAAGCGCATGTAA 743
consensus_5016#1      AAACCCG--TCTTAAGATGATCCGTGATCCTGG-CGGT-ACAAGCCCGAA-CGAG---AA 703
                      *******     ********************* **** *********** **     **

consensus_5016#0      TCAAGATNTCTCACCAACTNNTCGGCCAAGGTATGATACGGNNATACTGGAGAGACTGNG 803
consensus_5016#1      TCAAGATTCTCC-----CCCTTCGCCCAAG-TATGAT-CG-------------------- 736
                      *******    *     *   *** ***** ****** **                    

consensus_5016#0      CCCNGACTAAAGCCCCCCCAGGGAACGACAATTTGGNCAAAATTNCCCACCGGATTGGCC 863
consensus_5016#1      ------------------------------------------------------------
                                                                                  

consensus_5016#0      ACATTTGAACCCGGTANCCAGAGNCTGCCAAAGGGGAACNACGTCACGGAATTGGGCCAA 923
consensus_5016#1      ------------------------------------------------------------
                                                                                  

consensus_5016#0      NTGNGAATNCGGCACNGAACATGGAGATNAGCGTGAGANTCATTCACNGTCNNAGAAATG 983
consensus_5016#1      ------------------------------------------------------------
                                                                                  

consensus_5016#0      ANAAACCGGNATGTTCAANANTCNNTNAAACAAACTGGTTGGCGAGCCACCCAGGAACGT 1043
consensus_5016#1      ------------------------------------------------------------
                                                                                  

consensus_5016#0      TTGGTCAANTGCTAACCGGAAAAGGGGGCACACCTGGGTCCCACTCCANACCCCNNGGAA 1103
consensus_5016#1      ------------------------------------------------------------
                                                                                  

consensus_5016#0      TTANACAACNAAAACAGCCCGGCGCACATACNAGCAGCGTACCCAACAATTTTTGNATAC 1163
consensus_5016#1      ------------------------------------------------------------
                                                                                  

consensus_5016#0      ANACAACCCCACAAAACAGNGGTAGNGACACNACAATANGGTGGGAGCTTCAACAACGCA 1223
consensus_5016#1      ------------------------------------------------------------
                                                                                  

consensus_5016#0      ACANNGTANAACANGTTTNACAAATNGTNAACCAAAACNTGGTGAACGCGNGGCGCAACA 1283
consensus_5016#1      ------------------------------------------------------------
                                                                                  

consensus_5016#0      NCNANCCTGGACGCTCNAACTCACGCAACCCACNCNCACATCGNCNTTCNAGNCCCGGAA 1343
consensus_5016#1      ------------------------------------------------------------
                                                                                  

consensus_5016#0      GACTCACGCTGTCCCCCCAGCGTCANACCNCTGNGATATCCNNGCATCGCTGCA 1397
consensus_5016#1      ------------------------------------------------------
                                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)